Wall clock time and date at job start Mon Mar 30 2020 00:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 C 1.52999 * 109.46892 * 119.99501 * 2 1 3 5 5 H 1.08999 * 115.56368 * 270.18966 * 4 2 1 6 6 C 1.52998 * 117.50081 * 124.49827 * 4 2 1 7 7 C 1.52994 * 60.00225 * 252.51058 * 6 4 2 8 8 H 1.09003 * 117.50106 * 252.48692 * 7 6 4 9 9 C 1.50700 * 117.49988 * 107.48749 * 7 6 4 10 10 O 1.21280 * 119.99815 * 339.00545 * 9 7 6 11 11 N 1.34777 * 120.00137 * 159.00407 * 9 7 6 12 12 C 1.46497 * 120.00039 * 180.02562 * 11 9 7 13 13 C 1.53005 * 109.47186 * 180.02562 * 12 11 9 14 14 C 1.52995 * 109.47024 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.46833 * 180.02562 * 14 13 12 16 16 C 1.46498 * 120.00524 * 89.99640 * 15 14 13 17 17 C 1.36943 * 119.99655 * 269.72026 * 15 14 13 18 18 H 1.08000 * 120.00001 * 336.62257 * 17 15 14 19 19 C 1.38813 * 119.99847 * 156.62489 * 17 15 14 20 20 N 1.31623 * 119.99907 * 349.47961 * 19 17 15 21 21 Si 1.86799 * 119.99931 * 169.48173 * 19 17 15 22 22 H 1.48500 * 109.47213 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47301 * 119.99747 * 21 19 17 24 24 H 1.48501 * 109.47268 * 239.99639 * 21 19 17 25 25 H 1.09003 * 109.46764 * 66.15881 * 1 2 3 26 26 H 1.08997 * 109.47131 * 186.15377 * 1 2 3 27 27 H 1.08997 * 109.47837 * 306.15965 * 1 2 3 28 28 H 1.08993 * 109.47741 * 239.99483 * 2 1 3 29 29 H 1.08998 * 109.46935 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46602 * 299.99965 * 3 2 1 31 31 H 1.09005 * 109.47021 * 59.99571 * 3 2 1 32 32 H 1.09007 * 117.50247 * 145.02055 * 6 4 2 33 33 H 1.09006 * 117.51795 * 359.97438 * 6 4 2 34 34 H 0.96995 * 119.99664 * 0.02562 * 11 9 7 35 35 H 1.08997 * 109.47320 * 59.99634 * 12 11 9 36 36 H 1.09003 * 109.46901 * 299.99824 * 12 11 9 37 37 H 1.08992 * 109.46995 * 59.99656 * 13 12 11 38 38 H 1.09003 * 109.46928 * 299.99649 * 13 12 11 39 39 H 1.08997 * 109.47560 * 59.99428 * 14 13 12 40 40 H 1.09003 * 109.46823 * 299.99519 * 14 13 12 41 41 H 1.08995 * 109.47650 * 274.48889 * 16 15 14 42 42 H 1.09008 * 109.46759 * 34.48301 * 16 15 14 43 43 H 1.08996 * 109.47176 * 154.48273 * 16 15 14 44 44 H 0.96998 * 119.99343 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2493 5 1 2.1936 -0.0918 2.1259 6 6 3.0001 -1.8947 1.0452 7 6 1.5576 -2.1540 1.4843 8 1 1.3940 -2.4676 2.5153 9 6 0.6166 -2.7470 0.4674 10 8 0.8651 -2.6532 -0.7159 11 7 -0.5011 -3.3816 0.8731 12 6 -1.4155 -3.9585 -0.1154 13 6 -2.5957 -4.6151 0.6037 14 6 -3.5504 -5.2182 -0.4286 15 7 -4.6806 -5.8463 0.2599 16 6 -5.8844 -5.0653 0.5551 17 6 -4.6141 -7.1652 0.6226 18 1 -3.9443 -7.8348 0.1036 19 6 -5.4077 -7.6413 1.6572 20 7 -6.0659 -6.7976 2.4236 21 14 -5.5413 -9.4794 1.9619 22 1 -4.7108 -10.2074 0.9692 23 1 -5.0613 -9.7902 3.3324 24 1 -6.9584 -9.9020 1.8261 25 1 -0.3633 0.4154 -0.9400 26 1 -0.3633 -1.0217 0.1102 27 1 -0.3635 0.6063 0.8297 28 1 1.8934 -0.5139 -0.8898 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 3.7855 -2.0374 1.7874 33 1 3.2684 -2.1536 0.0209 34 1 -0.7000 -3.4563 1.8195 35 1 -0.8872 -4.7071 -0.7058 36 1 -1.7838 -3.1709 -0.7729 37 1 -3.1238 -3.8662 1.1937 38 1 -2.2278 -5.4027 1.2614 39 1 -3.0219 -5.9671 -1.0184 40 1 -3.9183 -4.4309 -1.0866 41 1 -5.7509 -4.5340 1.4974 42 1 -6.0565 -4.3464 -0.2460 43 1 -6.7414 -5.7342 0.6334 44 1 -6.6201 -7.1304 3.1468 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660352485.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:27 Heat of formation + Delta-G solvation = -25.126105 kcal Electronic energy + Delta-G solvation = -20642.759854 eV Core-core repulsion = 17595.373808 eV Total energy + Delta-G solvation = -3047.386046 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38746 -38.48333 -37.73452 -36.05273 -34.29966 -33.72499 -31.70806 -28.18456 -27.95926 -27.34038 -25.05514 -23.83053 -23.15052 -22.14983 -21.39582 -20.42435 -18.77157 -17.93458 -17.17735 -16.92257 -16.63937 -16.10828 -15.58298 -15.53094 -15.18368 -14.80322 -14.68852 -14.49200 -14.06764 -13.66348 -13.25660 -13.04795 -13.03804 -12.99031 -12.78757 -12.74956 -12.46675 -12.27664 -12.16924 -12.03688 -12.01483 -11.88146 -11.70030 -11.47700 -11.14172 -10.94197 -10.75402 -10.61550 -10.03961 -8.78697 -7.85342 -5.31913 1.46021 1.47827 1.50734 1.57935 2.21584 2.51231 2.95335 3.30988 3.60796 3.66027 3.81406 3.89019 4.04188 4.10745 4.22657 4.31183 4.40488 4.45352 4.48866 4.65018 4.67843 4.78155 4.79823 4.85286 4.89088 4.91103 4.93821 5.02986 5.06675 5.21363 5.28934 5.29374 5.31378 5.37256 5.44230 5.52551 5.57301 5.62628 5.71157 6.34994 6.59792 7.15378 7.29273 7.86843 8.31011 9.20273 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033923 B = 0.003217 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.212244 B = 8700.634457 C = 9031.729656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.138 4.138 4 C -0.105 4.105 5 H 0.138 0.862 6 C -0.139 4.139 7 C -0.205 4.205 8 H 0.142 0.858 9 C 0.542 3.458 10 O -0.581 6.581 11 N -0.722 5.722 12 C 0.136 3.864 13 C -0.128 4.128 14 C 0.151 3.849 15 N -0.620 5.620 16 C 0.174 3.826 17 C -0.261 4.261 18 H 0.070 0.930 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.268 1.268 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.046 0.954 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.129 0.871 33 H 0.086 0.914 34 H 0.410 0.590 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.057 0.943 41 H -0.005 1.005 42 H 0.023 0.977 43 H 0.033 0.967 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.535 14.112 -0.442 21.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.089 4.089 3 C -0.195 4.195 4 C -0.124 4.124 5 H 0.155 0.845 6 C -0.176 4.176 7 C -0.226 4.226 8 H 0.160 0.840 9 C 0.332 3.668 10 O -0.462 6.462 11 N -0.373 5.373 12 C 0.011 3.989 13 C -0.168 4.168 14 C 0.024 3.976 15 N -0.343 5.343 16 C 0.029 3.971 17 C -0.391 4.391 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.585 5.585 21 Si 0.797 3.203 22 H -0.192 1.192 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.562 14.121 -1.184 21.797 hybrid contribution -0.717 -1.252 0.799 1.649 sum 15.845 12.870 -0.385 20.417 Atomic orbital electron populations 1.21968 0.95939 1.01313 1.01425 1.20706 0.95090 0.96834 0.96281 1.21773 1.01400 0.94108 1.02203 1.22572 1.01041 0.88253 1.00529 0.84455 1.23166 0.90559 1.00726 1.03198 1.22427 0.97510 1.02675 0.99976 0.83979 1.19972 0.81179 0.76601 0.89084 1.90669 1.75554 1.60576 1.19381 1.46054 1.23025 1.57104 1.11165 1.21154 0.89632 0.96895 0.91186 1.22164 0.95477 0.99319 0.99864 1.20875 0.87870 0.95749 0.93106 1.44208 1.13136 1.08533 1.68464 1.20575 0.88868 0.93000 0.94649 1.19584 1.22260 0.85886 1.11418 0.91269 1.25787 1.01001 1.01808 0.96210 1.70227 1.34433 1.33825 1.20033 0.85182 0.77211 0.80526 0.77392 1.19213 1.21817 1.21804 0.93516 0.93817 0.91881 0.92425 0.91731 0.92848 0.91570 0.85328 0.89561 0.75411 0.92473 0.92073 0.92814 0.93157 0.93337 0.92446 0.98633 0.95819 0.94821 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 8.69 71.98 0.63 -2.71 16 2 C -0.07 -1.39 2.34 -10.79 -0.03 -1.41 16 3 C -0.14 -1.99 9.16 71.98 0.66 -1.34 16 4 C -0.11 -1.71 5.22 -10.79 -0.06 -1.76 16 5 H 0.14 1.54 8.08 -2.39 -0.02 1.52 16 6 C -0.14 -2.30 9.69 30.59 0.30 -2.00 16 7 C -0.20 -3.85 6.08 -11.54 -0.07 -3.92 16 8 H 0.14 1.97 8.14 -2.39 -0.02 1.95 16 9 C 0.54 14.44 4.66 87.66 0.41 14.85 16 10 O -0.58 -19.45 13.96 -3.03 -0.04 -19.49 16 11 N -0.72 -18.83 5.48 -463.06 -2.54 -21.37 16 12 C 0.14 4.07 5.67 86.38 0.49 4.56 16 13 C -0.13 -4.48 5.65 30.59 0.17 -4.31 16 14 C 0.15 6.00 5.71 86.38 0.49 6.49 16 15 N -0.62 -31.15 2.92 -726.95 -2.12 -33.27 16 16 C 0.17 8.66 9.04 127.77 1.16 9.82 16 17 C -0.26 -14.31 9.66 84.03 0.81 -13.50 16 18 H 0.07 3.70 7.84 -2.91 -0.02 3.68 16 19 C -0.05 -2.97 5.09 84.86 0.43 -2.54 16 20 N -0.94 -55.06 10.67 21.65 0.23 -54.83 16 21 Si 0.97 44.87 29.57 68.60 2.03 46.90 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 24 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.04 1.15 4.35 -2.39 -0.01 1.14 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.45 6.97 -2.39 -0.02 1.43 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.09 1.80 7.72 -2.38 -0.02 1.78 16 34 H 0.41 9.08 8.47 -92.71 -0.79 8.29 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.05 1.89 8.03 -2.39 -0.02 1.87 16 40 H 0.06 2.06 7.93 -2.39 -0.02 2.04 16 41 H 0.00 -0.25 7.87 -2.39 -0.02 -0.27 16 42 H 0.02 1.01 7.96 -2.38 -0.02 0.99 16 43 H 0.03 1.83 6.63 -2.39 -0.02 1.81 16 44 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -66.55 350.34 3.12 -63.43 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.17 Total: 16.41 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.39 Total: 2.22 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -4.43 Total: -109.47 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.04 Total: -19.49 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -66.55 3.12 -63.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660352485.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.306 kcal (2) G-P(sol) polarization free energy of solvation -66.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds