Wall clock time and date at job start Mon Mar 30 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46791 * 55.00346 * 4 3 2 6 6 C 1.52998 * 109.46926 * 295.00334 * 4 3 2 7 7 C 1.53001 * 109.47048 * 175.00233 * 4 3 2 8 8 C 1.50702 * 109.46640 * 184.99990 * 7 4 3 9 9 O 1.21279 * 120.00432 * 359.97438 * 8 7 4 10 10 N 1.34776 * 119.99797 * 180.02562 * 8 7 4 11 11 C 1.47018 * 125.64908 * 359.69352 * 10 8 7 12 12 C 1.54340 * 107.26763 * 178.85095 * 11 10 8 13 13 C 1.55154 * 103.01714 * 338.13673 * 12 11 10 14 14 H 1.08998 * 111.00587 * 277.23583 * 13 12 11 15 15 N 1.46500 * 111.00178 * 153.37802 * 13 12 11 16 16 C 1.36946 * 119.99558 * 92.80464 * 15 13 12 17 17 H 1.07997 * 119.99746 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99971 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99664 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00034 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46954 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47361 * 119.99811 * 20 18 16 23 23 H 1.48500 * 109.47169 * 240.00053 * 20 18 16 24 24 C 1.47420 * 125.64757 * 180.02562 * 10 8 7 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47396 * 299.99642 * 6 4 3 33 33 H 1.08998 * 109.47230 * 59.99893 * 6 4 3 34 34 H 1.09000 * 109.47081 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.47133 * 304.99735 * 7 4 3 36 36 H 1.08995 * 109.47116 * 65.00371 * 7 4 3 37 37 H 1.09008 * 109.88191 * 298.39418 * 11 10 8 38 38 H 1.09002 * 109.88567 * 59.55597 * 11 10 8 39 39 H 1.08996 * 110.84654 * 219.66895 * 12 11 10 40 40 H 1.09000 * 110.51351 * 96.45049 * 12 11 10 41 41 H 0.96998 * 120.00676 * 272.80195 * 15 13 12 42 42 H 0.97009 * 119.99938 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36979 * 322.92730 * 24 10 8 44 44 H 1.08999 * 110.36986 * 85.25753 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8428 6 6 4.0806 0.8327 1.3064 7 6 4.0799 2.8796 -0.1263 8 6 5.5818 2.8706 -0.2505 9 8 6.1850 1.8185 -0.2390 10 7 6.2547 4.0319 -0.3731 11 6 5.6517 5.3723 -0.4066 12 6 6.8050 6.3906 -0.5287 13 6 8.0283 5.5986 0.0039 14 1 8.0686 5.6276 1.0927 15 7 9.2743 6.1023 -0.5793 16 6 9.9947 7.0670 0.0733 17 1 9.6445 7.4561 1.0179 18 6 11.1755 7.5440 -0.4790 19 7 11.6025 7.0694 -1.6300 20 14 12.1586 8.8593 0.4114 21 1 11.4689 9.2220 1.6755 22 1 13.5155 8.3402 0.7187 23 1 12.2725 10.0619 -0.4523 24 6 7.7169 4.1680 -0.5029 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.7176 1.4219 2.1485 33 1 3.7173 -0.1911 1.3959 34 1 5.1706 0.8323 1.3057 35 1 3.6449 3.3434 -1.0116 36 1 3.7919 3.4460 0.7593 37 1 4.9864 5.4581 -1.2659 38 1 5.0966 5.5522 0.5140 39 1 6.6148 7.2680 0.0894 40 1 6.9540 6.6761 -1.5700 41 1 9.5890 5.7526 -1.4275 42 1 12.4279 7.4025 -2.0158 43 1 8.2233 3.4276 0.1165 44 1 8.0169 4.0609 -1.5453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661291426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:38 Heat of formation + Delta-G solvation = -50.474228 kcal Electronic energy + Delta-G solvation = -20555.711332 eV Core-core repulsion = 17507.226109 eV Total energy + Delta-G solvation = -3048.485223 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.95931 -37.77397 -36.51092 -34.14408 -32.85616 -31.54886 -29.58541 -28.70056 -27.01114 -26.72191 -23.78449 -22.85341 -21.95207 -20.31989 -20.01624 -18.80518 -17.38975 -16.88728 -16.18036 -15.63463 -15.14021 -14.89714 -14.40119 -14.12855 -13.67252 -13.61581 -13.47395 -13.19645 -12.71076 -12.65847 -12.39797 -12.12290 -11.95408 -11.71582 -11.68719 -11.57742 -11.20282 -11.11623 -10.88079 -10.84171 -10.73864 -10.68189 -10.59658 -10.28572 -10.06234 -9.80102 -9.49376 -8.99156 -8.37145 -7.07241 -5.84625 -3.15248 2.82074 3.18878 3.39312 3.45250 3.47368 4.47981 4.53086 4.60727 4.68662 4.91323 4.94452 5.04477 5.07210 5.26387 5.27685 5.38084 5.40864 5.50197 5.51512 5.57252 5.60824 5.61410 5.68568 5.74614 5.75983 5.81347 5.95278 5.98302 6.00142 6.10504 6.13480 6.24957 6.30401 6.36833 6.43773 6.56327 6.62474 6.88555 7.63700 7.77843 8.32472 8.37754 9.44425 9.98501 10.33359 11.37603 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055953 B = 0.002941 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.301747 B = 9519.864349 C = 9670.298059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.076 4.076 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.132 4.132 8 C 0.524 3.476 9 O -0.544 6.544 10 N -0.615 5.615 11 C 0.102 3.898 12 C -0.156 4.156 13 C 0.172 3.828 14 H 0.066 0.934 15 N -0.714 5.714 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.097 3.903 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.386 0.614 42 H 0.256 0.744 43 H 0.075 0.925 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.022 -8.941 3.139 23.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.095 4.095 5 H 0.095 0.905 6 C -0.211 4.211 7 C -0.172 4.172 8 C 0.313 3.687 9 O -0.422 6.422 10 N -0.349 5.349 11 C -0.022 4.022 12 C -0.197 4.197 13 C 0.060 3.940 14 H 0.084 0.916 15 N -0.354 5.354 16 C -0.375 4.375 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C -0.027 4.027 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.221 0.779 42 H 0.066 0.934 43 H 0.093 0.907 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.634 -9.434 3.271 22.923 hybrid contribution 0.611 0.837 0.052 1.038 sum -20.022 -8.597 3.322 22.042 Atomic orbital electron populations 1.21783 0.96115 1.01424 1.01670 1.21573 0.95476 0.97043 1.02296 1.21681 0.94784 0.96896 1.01899 1.20909 0.94294 0.94389 0.99898 0.90452 1.21992 1.03271 1.00001 0.95828 1.21727 0.92151 0.99386 1.03912 1.20326 0.89771 0.82329 0.76256 1.90656 1.70445 1.30200 1.50917 1.48530 1.08553 1.05998 1.71856 1.22086 0.97046 0.82399 1.00631 1.23428 0.95702 0.97638 1.02980 1.21299 0.86791 0.89161 0.96780 0.91587 1.42279 1.21867 1.46095 1.25171 1.19273 1.02277 1.12981 1.03000 0.90911 1.24784 0.98267 1.00384 0.97303 1.69676 1.23691 1.45778 1.18588 0.86090 0.80026 0.81199 0.78676 1.20481 1.21772 1.21796 1.22588 0.79194 0.99390 1.01486 0.92850 0.92948 0.92866 0.91682 0.92047 0.92061 0.91973 0.93504 0.92875 0.90614 0.89241 0.89164 0.92102 0.91955 0.90704 0.90658 0.77937 0.93388 0.90662 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.12 -0.92 4.68 -26.73 -0.13 -1.05 16 4 C -0.08 -0.78 2.04 -90.62 -0.18 -0.97 16 5 H 0.08 0.92 7.96 -51.93 -0.41 0.50 16 6 C -0.15 -1.69 8.69 37.16 0.32 -1.37 16 7 C -0.13 -1.40 4.37 -27.88 -0.12 -1.52 16 8 C 0.52 7.88 7.57 -10.99 -0.08 7.80 16 9 O -0.54 -9.99 14.22 5.56 0.08 -9.92 16 10 N -0.62 -9.41 3.33 -170.49 -0.57 -9.98 16 11 C 0.10 1.31 6.49 -3.06 -0.02 1.29 16 12 C -0.16 -2.49 6.64 -24.89 -0.17 -2.65 16 13 C 0.17 3.30 3.72 -65.77 -0.24 3.06 16 14 H 0.07 1.29 8.09 -51.93 -0.42 0.87 16 15 N -0.71 -17.35 5.24 -51.34 -0.27 -17.62 16 16 C -0.24 -6.57 9.96 -15.05 -0.15 -6.72 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 20 Si 0.91 21.92 29.55 -169.99 -5.02 16.90 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 C 0.10 1.74 6.55 -2.52 -0.02 1.72 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 34 H 0.08 1.06 5.95 -51.93 -0.31 0.75 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 41 H 0.39 10.03 7.76 -40.82 -0.32 9.71 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 1.43 8.04 -51.93 -0.42 1.01 16 44 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -30.42 349.44 -8.47 -38.89 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.02 Total: 5.88 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -0.67 Total: -2.58 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.11 Total: -54.44 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.42 -8.47 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661291426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.582 kcal (2) G-P(sol) polarization free energy of solvation -30.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds