Wall clock time and date at job start Mon Mar 30 2020 00:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46791 * 55.00346 * 4 3 2 6 6 C 1.52998 * 109.46926 * 295.00334 * 4 3 2 7 7 C 1.53001 * 109.47048 * 175.00233 * 4 3 2 8 8 C 1.50702 * 109.46640 * 184.99990 * 7 4 3 9 9 O 1.21279 * 120.00432 * 359.97438 * 8 7 4 10 10 N 1.34776 * 119.99797 * 180.02562 * 8 7 4 11 11 C 1.47018 * 125.64908 * 359.69352 * 10 8 7 12 12 C 1.54340 * 107.26763 * 178.85095 * 11 10 8 13 13 C 1.55154 * 103.01714 * 338.13673 * 12 11 10 14 14 H 1.08998 * 111.00587 * 277.23583 * 13 12 11 15 15 N 1.46500 * 111.00178 * 153.37802 * 13 12 11 16 16 C 1.36946 * 119.99558 * 92.80464 * 15 13 12 17 17 H 1.07997 * 119.99746 * 0.02562 * 16 15 13 18 18 C 1.38813 * 119.99971 * 179.97438 * 16 15 13 19 19 N 1.31618 * 119.99664 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00034 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46954 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47361 * 119.99811 * 20 18 16 23 23 H 1.48500 * 109.47169 * 240.00053 * 20 18 16 24 24 C 1.47420 * 125.64757 * 180.02562 * 10 8 7 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 32 32 H 1.09000 * 109.47396 * 299.99642 * 6 4 3 33 33 H 1.08998 * 109.47230 * 59.99893 * 6 4 3 34 34 H 1.09000 * 109.47081 * 179.97438 * 6 4 3 35 35 H 1.08998 * 109.47133 * 304.99735 * 7 4 3 36 36 H 1.08995 * 109.47116 * 65.00371 * 7 4 3 37 37 H 1.09008 * 109.88191 * 298.39418 * 11 10 8 38 38 H 1.09002 * 109.88567 * 59.55597 * 11 10 8 39 39 H 1.08996 * 110.84654 * 219.66895 * 12 11 10 40 40 H 1.09000 * 110.51351 * 96.45049 * 12 11 10 41 41 H 0.96998 * 120.00676 * 272.80195 * 15 13 12 42 42 H 0.97009 * 119.99938 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.36979 * 322.92730 * 24 10 8 44 44 H 1.08999 * 110.36986 * 85.25753 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8428 6 6 4.0806 0.8327 1.3064 7 6 4.0799 2.8796 -0.1263 8 6 5.5818 2.8706 -0.2505 9 8 6.1850 1.8185 -0.2390 10 7 6.2547 4.0319 -0.3731 11 6 5.6517 5.3723 -0.4066 12 6 6.8050 6.3906 -0.5287 13 6 8.0283 5.5986 0.0039 14 1 8.0686 5.6276 1.0927 15 7 9.2743 6.1023 -0.5793 16 6 9.9947 7.0670 0.0733 17 1 9.6445 7.4561 1.0179 18 6 11.1755 7.5440 -0.4790 19 7 11.6025 7.0694 -1.6300 20 14 12.1586 8.8593 0.4114 21 1 11.4689 9.2220 1.6755 22 1 13.5155 8.3402 0.7187 23 1 12.2725 10.0619 -0.4523 24 6 7.7169 4.1680 -0.5029 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.7176 1.4219 2.1485 33 1 3.7173 -0.1911 1.3959 34 1 5.1706 0.8323 1.3057 35 1 3.6449 3.3434 -1.0116 36 1 3.7919 3.4460 0.7593 37 1 4.9864 5.4581 -1.2659 38 1 5.0966 5.5522 0.5140 39 1 6.6148 7.2680 0.0894 40 1 6.9540 6.6761 -1.5700 41 1 9.5890 5.7526 -1.4275 42 1 12.4279 7.4025 -2.0158 43 1 8.2233 3.4276 0.1165 44 1 8.0169 4.0609 -1.5453 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661291426.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:43:38 Heat of formation + Delta-G solvation = -68.543387 kcal Electronic energy + Delta-G solvation = -20556.494869 eV Core-core repulsion = 17507.226109 eV Total energy + Delta-G solvation = -3049.268760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.16337 -38.99804 -37.44561 -35.92744 -33.65621 -33.22933 -31.08045 -29.92366 -28.26422 -27.41665 -25.60208 -24.15315 -22.71114 -21.65640 -20.98519 -19.93487 -19.33166 -18.07003 -17.47795 -16.61636 -16.37566 -16.22559 -15.66343 -15.49594 -14.82002 -14.73058 -14.58284 -14.35566 -14.19211 -13.75252 -13.41497 -13.16669 -13.11270 -13.04033 -12.79739 -12.69611 -12.54497 -12.34864 -12.31830 -12.09654 -11.80463 -11.76292 -11.63547 -11.59479 -11.45349 -11.24133 -10.97013 -10.68409 -9.62948 -9.06203 -7.96476 -5.26804 1.48610 1.49463 1.59346 1.66711 1.99167 2.56447 3.34440 3.55313 3.72950 3.81923 3.92941 3.97896 4.06396 4.25049 4.26835 4.31164 4.36866 4.45916 4.52102 4.57554 4.69447 4.74140 4.77123 4.83129 4.86949 4.95762 4.99079 5.01957 5.09187 5.18996 5.24335 5.26456 5.29595 5.34930 5.42004 5.46132 5.53110 5.57824 5.61291 6.24407 6.60471 7.19720 7.30886 8.02405 8.26390 9.27082 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.055953 B = 0.002941 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.301747 B = 9519.864349 C = 9670.298059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C -0.107 4.107 4 C -0.074 4.074 5 H 0.055 0.945 6 C -0.151 4.151 7 C -0.122 4.122 8 C 0.517 3.483 9 O -0.586 6.586 10 N -0.617 5.617 11 C 0.108 3.892 12 C -0.146 4.146 13 C 0.165 3.835 14 H 0.064 0.936 15 N -0.730 5.730 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.076 4.076 19 N -0.970 5.970 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.297 1.297 23 H -0.293 1.293 24 C 0.106 3.894 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.040 0.960 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.055 0.945 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.037 -7.916 4.230 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.144 4.144 4 C -0.093 4.093 5 H 0.074 0.926 6 C -0.209 4.209 7 C -0.161 4.161 8 C 0.308 3.692 9 O -0.467 6.467 10 N -0.351 5.351 11 C -0.014 4.014 12 C -0.186 4.186 13 C 0.055 3.945 14 H 0.082 0.918 15 N -0.369 5.369 16 C -0.371 4.371 17 H 0.099 0.901 18 C -0.268 4.268 19 N -0.620 5.620 20 Si 0.804 3.196 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.220 1.220 24 C -0.019 4.019 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.104 0.896 40 H 0.080 0.920 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.724 -8.403 4.398 25.550 hybrid contribution 1.506 0.422 -0.260 1.585 sum -22.219 -7.981 4.138 23.968 Atomic orbital electron populations 1.21763 0.95104 1.01791 1.02126 1.21584 0.96349 0.96915 1.01784 1.21618 0.92536 0.97231 1.03025 1.20889 0.96033 0.93953 0.98466 0.92648 1.21944 1.00969 1.00958 0.96981 1.21797 0.88132 1.00035 1.06178 1.21257 0.91606 0.81350 0.74962 1.90649 1.71683 1.31743 1.52593 1.48632 1.07104 1.07428 1.71912 1.22219 0.95919 0.79617 1.03656 1.23219 0.94919 0.98471 1.02035 1.21462 0.86292 0.90307 0.96453 0.91845 1.42441 1.23625 1.46026 1.24779 1.19664 1.02075 1.12453 1.02893 0.90055 1.25605 0.99790 1.03111 0.98340 1.69835 1.24121 1.47689 1.20398 0.85049 0.78139 0.78356 0.78055 1.18692 1.22429 1.22025 1.22230 0.81543 0.98057 1.00058 0.92294 0.92729 0.92464 0.92095 0.92805 0.90941 0.90718 0.92124 0.92269 0.94052 0.86691 0.86632 0.89167 0.88695 0.89553 0.92016 0.79443 0.94009 0.92671 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.13 -1.71 5.69 30.59 0.17 -1.54 16 3 C -0.11 -1.37 4.68 30.59 0.14 -1.23 16 4 C -0.07 -1.39 2.04 -10.79 -0.02 -1.41 16 5 H 0.05 1.28 7.96 -2.39 -0.02 1.26 16 6 C -0.15 -3.18 8.69 71.98 0.63 -2.55 16 7 C -0.12 -2.19 4.37 29.85 0.13 -2.06 16 8 C 0.52 14.85 7.57 87.66 0.66 15.52 16 9 O -0.59 -21.91 14.22 -3.03 -0.04 -21.95 16 10 N -0.62 -17.88 3.33 -811.71 -2.70 -20.58 16 11 C 0.11 2.37 6.49 86.74 0.56 2.93 16 12 C -0.15 -4.35 6.64 31.79 0.21 -4.14 16 13 C 0.16 6.30 3.72 46.39 0.17 6.47 16 14 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 15 N -0.73 -36.04 5.24 -316.33 -1.66 -37.70 16 16 C -0.24 -12.90 9.96 84.03 0.84 -12.06 16 17 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 18 C -0.08 -4.30 5.50 84.86 0.47 -3.84 16 19 N -0.97 -58.99 13.06 21.65 0.28 -58.71 16 20 Si 0.97 45.36 29.55 68.60 2.03 47.39 16 21 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 C 0.11 3.85 6.55 86.87 0.57 4.42 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 28 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.06 1.13 6.57 -2.39 -0.02 1.11 16 34 H 0.04 1.16 5.95 -2.39 -0.01 1.15 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 41 H 0.37 20.11 7.76 -92.71 -0.72 19.39 16 42 H 0.25 14.81 8.31 -92.70 -0.77 14.04 16 43 H 0.05 2.19 8.04 -2.38 -0.02 2.17 16 44 H 0.05 2.03 8.00 -2.39 -0.02 2.02 16 Total: -1.00 -68.05 349.44 3.39 -64.66 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.23 Total: 27.28 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 5.25 Total: -0.38 kcal Atomic # 7 Polarization: -112.92 SS G_CDS: -4.08 Total: -117.00 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.04 Total: -21.95 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Total: -68.05 3.39 -64.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661291426.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.884 kcal (2) G-P(sol) polarization free energy of solvation -68.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds