Wall clock time and date at job start Mon Mar 30 2020 00:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47124 * 60.00415 * 3 2 1 5 5 C 1.53000 * 109.47460 * 299.99949 * 3 2 1 6 6 C 1.53004 * 109.46884 * 180.02562 * 3 2 1 7 7 C 1.50703 * 109.46993 * 180.02562 * 6 3 2 8 8 O 1.21278 * 120.00183 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99755 * 179.97438 * 7 6 3 10 10 C 1.46499 * 119.99531 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.85385 * 23.80181 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00207 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.36940 * 119.99538 * 154.99700 * 15 13 12 17 17 H 1.07999 * 120.00330 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99727 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99969 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99953 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46609 * 90.00050 * 20 18 16 22 22 H 1.48497 * 109.47072 * 209.99981 * 20 18 16 23 23 H 1.48490 * 109.47326 * 330.00481 * 20 18 16 24 24 C 1.53782 * 113.61191 * 252.49880 * 10 9 7 25 25 H 1.08997 * 109.47745 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46946 * 300.00118 * 1 2 3 27 27 H 1.09001 * 109.47174 * 59.99500 * 1 2 3 28 28 H 1.09003 * 109.46946 * 239.99882 * 2 1 3 29 29 H 1.09004 * 109.46694 * 120.00695 * 2 1 3 30 30 H 1.09001 * 109.47218 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47055 * 299.99682 * 4 3 2 32 32 H 1.09007 * 109.47448 * 59.99840 * 4 3 2 33 33 H 1.09003 * 109.46986 * 300.00235 * 5 3 2 34 34 H 1.08997 * 109.46526 * 59.99973 * 5 3 2 35 35 H 1.09001 * 109.47004 * 180.02562 * 5 3 2 36 36 H 1.08994 * 109.47522 * 59.99846 * 6 3 2 37 37 H 1.09007 * 109.47099 * 299.99799 * 6 3 2 38 38 H 0.96997 * 119.99692 * 0.02562 * 9 7 6 39 39 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 40 40 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 41 41 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 42 42 H 0.96999 * 120.00047 * 180.02562 * 19 18 16 43 43 H 1.08997 * 113.61668 * 334.56642 * 24 10 9 44 44 H 1.08998 * 113.61674 * 105.39151 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1636 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5700 1.4423 -0.0006 7 6 4.0725 2.8631 0.0000 8 8 3.2844 3.7850 0.0013 9 7 5.3976 3.1093 0.0001 10 6 5.8860 4.4905 0.0013 11 1 5.1607 5.1955 0.4073 12 6 7.2954 4.6450 0.5968 13 6 7.5763 5.6569 -0.5267 14 1 8.5756 5.5694 -0.9532 15 7 7.2242 7.0351 -0.1767 16 6 7.8490 8.0812 -0.8018 17 1 8.6009 7.8901 -1.5531 18 6 7.5157 9.3872 -0.4698 19 7 8.1158 10.3925 -1.0709 20 14 6.2146 9.7177 0.8292 21 1 6.8591 9.8058 2.1641 22 1 5.5267 10.9983 0.5261 23 1 5.2238 8.6117 0.8300 24 6 6.4907 4.9311 -1.3422 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5140 0.8900 30 1 1.8939 3.1911 1.2495 31 1 0.4401 2.1637 1.2493 32 1 1.8935 1.6497 2.1393 33 1 1.8934 1.6499 -2.1392 34 1 0.4401 2.1637 -1.2492 35 1 1.8939 3.1912 -1.2494 36 1 3.9330 0.9286 -0.8908 37 1 3.9337 0.9283 0.8892 38 1 6.0278 2.3719 -0.0006 39 1 7.3023 5.0861 1.5935 40 1 7.8991 3.7399 0.5303 41 1 6.5487 7.2067 0.4979 42 1 7.8832 11.3051 -0.8386 43 1 6.8750 4.1048 -1.9401 44 1 5.8475 5.6022 -1.9115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661426609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:02 Heat of formation + Delta-G solvation = -19.716506 kcal Electronic energy + Delta-G solvation = -20975.501628 eV Core-core repulsion = 17928.350160 eV Total energy + Delta-G solvation = -3047.151468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32617 -38.67962 -36.96928 -34.13110 -32.68487 -31.05650 -30.31244 -28.04479 -27.28143 -25.22263 -24.74738 -23.78531 -22.38636 -20.51134 -19.13494 -18.54289 -17.66379 -16.91797 -16.13250 -15.41182 -15.11644 -14.92442 -14.73665 -14.42767 -14.10770 -13.54091 -13.11621 -13.03278 -12.73309 -12.40692 -12.36295 -12.22039 -12.12791 -11.91347 -11.85983 -11.36300 -11.20303 -10.98778 -10.93277 -10.82045 -10.64612 -10.63275 -10.36081 -10.25297 -9.87613 -9.61830 -9.31645 -8.94550 -8.72501 -7.31499 -5.79889 -3.16573 2.71608 3.30447 3.38460 3.43018 3.46324 4.50791 4.57647 4.59145 4.65117 4.88722 5.01883 5.02623 5.10122 5.21062 5.24150 5.32990 5.38678 5.40589 5.49383 5.51085 5.69318 5.74440 5.76429 5.78452 5.83204 5.87691 5.99126 6.00306 6.04051 6.08207 6.17046 6.26032 6.46237 6.49071 6.52841 6.61526 6.72229 6.91275 7.63532 7.96750 8.37500 8.39440 9.16782 9.89265 10.07631 11.37988 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.003728 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.695870 B = 7508.054564 C = 7961.136243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.114 4.114 3 C -0.046 4.046 4 C -0.156 4.156 5 C -0.156 4.156 6 C -0.134 4.134 7 C 0.509 3.491 8 O -0.531 6.531 9 N -0.720 5.720 10 C 0.122 3.878 11 H 0.109 0.891 12 C -0.166 4.166 13 C 0.177 3.823 14 H 0.077 0.923 15 N -0.729 5.729 16 C -0.249 4.249 17 H 0.093 0.907 18 C 0.008 3.992 19 N -0.931 5.931 20 Si 0.882 3.118 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.275 1.275 24 C -0.182 4.182 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.085 0.915 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.044 0.956 34 H 0.052 0.948 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.396 0.604 39 H 0.071 0.929 40 H 0.082 0.918 41 H 0.363 0.637 42 H 0.260 0.740 43 H 0.072 0.928 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.290 -23.664 3.281 26.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.151 4.151 3 C -0.046 4.046 4 C -0.213 4.213 5 C -0.213 4.213 6 C -0.174 4.174 7 C 0.296 3.704 8 O -0.408 6.408 9 N -0.370 5.370 10 C 0.018 3.982 11 H 0.127 0.873 12 C -0.206 4.206 13 C 0.064 3.936 14 H 0.095 0.905 15 N -0.370 5.370 16 C -0.378 4.378 17 H 0.110 0.890 18 C -0.189 4.189 19 N -0.578 5.578 20 Si 0.711 3.289 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.201 1.201 24 C -0.224 4.224 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.230 0.770 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.196 0.804 42 H 0.071 0.929 43 H 0.091 0.909 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.702 -22.793 3.143 25.376 hybrid contribution -0.613 -0.150 0.862 1.068 sum -11.315 -22.943 4.005 25.893 Atomic orbital electron populations 1.21875 0.95830 1.01197 1.02336 1.21588 0.96225 0.95739 1.01568 1.20262 0.92171 0.94985 0.97180 1.22160 1.00795 1.02835 0.95470 1.22159 1.00767 1.02885 0.95463 1.21795 0.97308 0.94375 1.03906 1.20677 0.82433 0.91531 0.75740 1.90593 1.54565 1.46692 1.48948 1.46178 1.06835 1.09035 1.74961 1.22614 0.94852 0.82333 0.98398 0.87287 1.23909 0.95409 1.00570 1.00671 1.20893 0.96275 0.83768 0.92640 0.90528 1.42542 1.46767 1.00592 1.47055 1.19091 1.16998 0.84443 1.17307 0.88970 1.24672 0.99342 0.95413 0.99431 1.69695 1.44977 0.98283 1.44877 0.86590 0.82341 0.77607 0.82316 1.20962 1.21560 1.20120 1.24300 1.01007 1.00440 0.96694 0.93154 0.92373 0.92329 0.92162 0.92200 0.89674 0.92847 0.93762 0.93701 0.92861 0.89624 0.89196 0.89264 0.77035 0.91063 0.89934 0.80381 0.92949 0.90925 0.90961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 9.21 37.16 0.34 -0.82 16 2 C -0.11 -0.88 4.99 -26.74 -0.13 -1.01 16 3 C -0.05 -0.44 0.54 -154.51 -0.08 -0.52 16 4 C -0.16 -1.69 7.82 37.16 0.29 -1.40 16 5 C -0.16 -1.73 7.82 37.16 0.29 -1.44 16 6 C -0.13 -1.21 4.77 -27.88 -0.13 -1.34 16 7 C 0.51 6.52 7.24 -10.98 -0.08 6.44 16 8 O -0.53 -8.84 10.95 5.56 0.06 -8.78 16 9 N -0.72 -8.56 5.35 -53.02 -0.28 -8.84 16 10 C 0.12 1.87 4.12 -67.12 -0.28 1.59 16 11 H 0.11 2.01 7.46 -51.93 -0.39 1.62 16 12 C -0.17 -2.41 7.57 -25.92 -0.20 -2.61 16 13 C 0.18 3.28 4.57 -67.02 -0.31 2.97 16 14 H 0.08 1.42 8.10 -51.93 -0.42 1.00 16 15 N -0.73 -17.19 5.12 -52.54 -0.27 -17.46 16 16 C -0.25 -7.00 10.45 -15.06 -0.16 -7.15 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 18 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 19 N -0.93 -29.29 13.97 55.49 0.78 -28.52 16 20 Si 0.88 22.39 27.74 -169.99 -4.71 17.68 16 21 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -6.72 6.52 56.52 0.37 -6.35 16 24 C -0.18 -3.04 7.68 -25.82 -0.20 -3.23 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.11 16 27 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.08 1.18 5.51 -51.93 -0.29 0.89 16 31 H 0.05 0.54 6.43 -51.93 -0.33 0.21 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.55 6.43 -51.93 -0.33 0.21 16 35 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.40 3.41 8.73 -40.82 -0.36 3.05 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 0.95 8.12 -51.93 -0.42 0.53 16 41 H 0.36 8.53 5.76 -40.82 -0.24 8.30 16 42 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 LS Contribution 338.85 15.07 5.11 5.11 Total: -1.00 -32.24 338.85 -7.61 -39.85 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -7.55 Total: 9.37 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: -0.74 Total: -8.40 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.22 Total: -54.82 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.06 Total: -8.78 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.71 Total: 17.68 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.24 -7.61 -39.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661426609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.136 kcal (2) G-P(sol) polarization free energy of solvation -32.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds