Wall clock time and date at job start Mon Mar 30 2020 00:35:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47310 * 2 1 4 4 C 1.52996 * 109.47124 * 60.00415 * 3 2 1 5 5 C 1.53000 * 109.47460 * 299.99949 * 3 2 1 6 6 C 1.53004 * 109.46884 * 180.02562 * 3 2 1 7 7 C 1.50703 * 109.46993 * 180.02562 * 6 3 2 8 8 O 1.21278 * 120.00183 * 0.02562 * 7 6 3 9 9 N 1.34783 * 119.99755 * 179.97438 * 7 6 3 10 10 C 1.46499 * 119.99531 * 180.02562 * 9 7 6 11 11 H 1.08996 * 112.85385 * 23.80181 * 10 9 7 12 12 C 1.53781 * 113.61225 * 155.00207 * 10 9 7 13 13 C 1.53786 * 87.17350 * 139.93836 * 12 10 9 14 14 H 1.09000 * 113.61138 * 220.06261 * 13 12 10 15 15 N 1.46496 * 113.61518 * 89.15486 * 13 12 10 16 16 C 1.36940 * 119.99538 * 154.99700 * 15 13 12 17 17 H 1.07999 * 120.00330 * 0.02562 * 16 15 13 18 18 C 1.38814 * 119.99727 * 180.02562 * 16 15 13 19 19 N 1.31615 * 119.99969 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99953 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46609 * 90.00050 * 20 18 16 22 22 H 1.48497 * 109.47072 * 209.99981 * 20 18 16 23 23 H 1.48490 * 109.47326 * 330.00481 * 20 18 16 24 24 C 1.53782 * 113.61191 * 252.49880 * 10 9 7 25 25 H 1.08997 * 109.47745 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46946 * 300.00118 * 1 2 3 27 27 H 1.09001 * 109.47174 * 59.99500 * 1 2 3 28 28 H 1.09003 * 109.46946 * 239.99882 * 2 1 3 29 29 H 1.09004 * 109.46694 * 120.00695 * 2 1 3 30 30 H 1.09001 * 109.47218 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.47055 * 299.99682 * 4 3 2 32 32 H 1.09007 * 109.47448 * 59.99840 * 4 3 2 33 33 H 1.09003 * 109.46986 * 300.00235 * 5 3 2 34 34 H 1.08997 * 109.46526 * 59.99973 * 5 3 2 35 35 H 1.09001 * 109.47004 * 180.02562 * 5 3 2 36 36 H 1.08994 * 109.47522 * 59.99846 * 6 3 2 37 37 H 1.09007 * 109.47099 * 299.99799 * 6 3 2 38 38 H 0.96997 * 119.99692 * 0.02562 * 9 7 6 39 39 H 1.09002 * 113.61445 * 254.52836 * 12 10 9 40 40 H 1.09002 * 113.61408 * 25.34566 * 12 10 9 41 41 H 0.97001 * 120.00117 * 335.00621 * 15 13 12 42 42 H 0.96999 * 120.00047 * 180.02562 * 19 18 16 43 43 H 1.08997 * 113.61668 * 334.56642 * 24 10 9 44 44 H 1.08998 * 113.61674 * 105.39151 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5301 2.1636 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5700 1.4423 -0.0006 7 6 4.0725 2.8631 0.0000 8 8 3.2844 3.7850 0.0013 9 7 5.3976 3.1093 0.0001 10 6 5.8860 4.4905 0.0013 11 1 5.1607 5.1955 0.4073 12 6 7.2954 4.6450 0.5968 13 6 7.5763 5.6569 -0.5267 14 1 8.5756 5.5694 -0.9532 15 7 7.2242 7.0351 -0.1767 16 6 7.8490 8.0812 -0.8018 17 1 8.6009 7.8901 -1.5531 18 6 7.5157 9.3872 -0.4698 19 7 8.1158 10.3925 -1.0709 20 14 6.2146 9.7177 0.8292 21 1 6.8591 9.8058 2.1641 22 1 5.5267 10.9983 0.5261 23 1 5.2238 8.6117 0.8300 24 6 6.4907 4.9311 -1.3422 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5140 0.8900 30 1 1.8939 3.1911 1.2495 31 1 0.4401 2.1637 1.2493 32 1 1.8935 1.6497 2.1393 33 1 1.8934 1.6499 -2.1392 34 1 0.4401 2.1637 -1.2492 35 1 1.8939 3.1912 -1.2494 36 1 3.9330 0.9286 -0.8908 37 1 3.9337 0.9283 0.8892 38 1 6.0278 2.3719 -0.0006 39 1 7.3023 5.0861 1.5935 40 1 7.8991 3.7399 0.5303 41 1 6.5487 7.2067 0.4979 42 1 7.8832 11.3051 -0.8386 43 1 6.8750 4.1048 -1.9401 44 1 5.8475 5.6022 -1.9115 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661426609.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:01 Heat of formation + Delta-G solvation = -41.631595 kcal Electronic energy + Delta-G solvation = -20976.451938 eV Core-core repulsion = 17928.350160 eV Total energy + Delta-G solvation = -3048.101778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.35371 -39.90638 -37.89572 -35.76819 -34.26174 -32.41735 -31.58062 -28.91054 -28.13726 -26.53006 -26.18341 -24.93129 -23.88513 -21.53374 -20.54367 -19.65356 -19.38044 -17.90100 -17.39085 -16.55992 -16.35999 -16.08875 -15.78235 -15.62025 -15.29177 -14.75983 -14.71030 -14.29757 -14.00930 -13.80438 -13.65603 -13.33695 -13.06610 -12.92579 -12.78486 -12.65234 -12.47751 -12.28561 -12.19989 -11.91181 -11.84909 -11.75088 -11.70519 -11.40309 -11.30119 -11.28557 -10.94852 -10.32950 -9.86842 -9.33007 -8.06465 -5.39579 1.34497 1.37011 1.43364 1.75405 2.33936 2.43901 3.23594 3.48145 3.68562 3.76218 3.84459 3.86139 3.96595 4.19706 4.25088 4.31086 4.44504 4.52336 4.67449 4.70474 4.78455 4.80767 4.83454 4.88981 4.93865 4.99123 5.11499 5.12202 5.13340 5.20212 5.22994 5.26751 5.28259 5.30798 5.47680 5.61442 5.63875 5.76028 5.81650 6.19405 6.72703 7.03779 7.45583 7.81141 7.97259 9.14877 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031011 B = 0.003728 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.695870 B = 7508.054564 C = 7961.136243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.107 4.107 3 C -0.046 4.046 4 C -0.153 4.153 5 C -0.154 4.154 6 C -0.126 4.126 7 C 0.501 3.499 8 O -0.575 6.575 9 N -0.706 5.706 10 C 0.130 3.870 11 H 0.074 0.926 12 C -0.138 4.138 13 C 0.151 3.849 14 H 0.076 0.924 15 N -0.738 5.738 16 C -0.231 4.231 17 H 0.064 0.936 18 C -0.061 4.061 19 N -0.981 5.981 20 Si 0.949 3.051 21 H -0.273 1.273 22 H -0.295 1.295 23 H -0.264 1.264 24 C -0.173 4.173 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.127 0.873 41 H 0.363 0.637 42 H 0.258 0.742 43 H 0.104 0.896 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.621 -27.527 4.463 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.145 4.145 3 C -0.046 4.046 4 C -0.210 4.210 5 C -0.211 4.211 6 C -0.165 4.165 7 C 0.290 3.710 8 O -0.455 6.455 9 N -0.358 5.358 10 C 0.024 3.976 11 H 0.092 0.908 12 C -0.177 4.177 13 C 0.041 3.959 14 H 0.094 0.906 15 N -0.379 5.379 16 C -0.362 4.362 17 H 0.082 0.918 18 C -0.252 4.252 19 N -0.631 5.631 20 Si 0.776 3.224 21 H -0.198 1.198 22 H -0.222 1.222 23 H -0.189 1.189 24 C -0.214 4.214 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.255 0.745 39 H 0.087 0.913 40 H 0.145 0.855 41 H 0.196 0.804 42 H 0.067 0.933 43 H 0.123 0.877 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.020 -26.759 4.334 29.262 hybrid contribution -0.496 0.973 0.402 1.164 sum -11.516 -25.786 4.736 28.635 Atomic orbital electron populations 1.21889 0.96014 1.01816 1.01744 1.21543 0.96046 0.94041 1.02836 1.20283 0.92847 0.96015 0.95488 1.22102 1.00877 1.01184 0.96868 1.22104 1.00875 1.01153 0.96940 1.21839 0.96536 0.91735 1.06396 1.21462 0.82139 0.92824 0.74560 1.90612 1.55710 1.48468 1.50670 1.45960 1.07225 1.08104 1.74539 1.22162 0.94615 0.83711 0.97071 0.90819 1.23744 0.94836 1.00462 0.98655 1.21253 0.96687 0.82372 0.95606 0.90632 1.42559 1.46635 1.01770 1.46930 1.19096 1.15491 0.85795 1.15802 0.91804 1.25433 1.02163 0.95354 1.02299 1.69858 1.47358 0.98620 1.47276 0.85505 0.79788 0.77227 0.79837 1.19841 1.22163 1.18887 1.24191 0.99584 1.00447 0.97216 0.91914 0.92939 0.93035 0.90938 0.90800 0.93012 0.92792 0.92512 0.92699 0.92772 0.93104 0.86677 0.86473 0.74540 0.91341 0.85516 0.80355 0.93266 0.87737 0.94581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.21 71.98 0.66 -1.33 16 2 C -0.11 -1.27 4.99 30.59 0.15 -1.12 16 3 C -0.05 -0.78 0.54 -52.18 -0.03 -0.81 16 4 C -0.15 -3.16 7.82 71.98 0.56 -2.60 16 5 C -0.15 -3.27 7.82 71.98 0.56 -2.71 16 6 C -0.13 -1.81 4.77 29.85 0.14 -1.67 16 7 C 0.50 11.87 7.24 87.66 0.63 12.51 16 8 O -0.57 -19.31 10.95 -3.02 -0.03 -19.34 16 9 N -0.71 -14.67 5.35 -440.03 -2.36 -17.03 16 10 C 0.13 3.76 4.12 45.52 0.19 3.95 16 11 H 0.07 2.72 7.46 -2.39 -0.02 2.70 16 12 C -0.14 -3.58 7.57 31.12 0.24 -3.35 16 13 C 0.15 5.44 4.57 45.58 0.21 5.65 16 14 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 15 N -0.74 -34.89 5.12 -320.15 -1.64 -36.53 16 16 C -0.23 -13.30 10.45 84.03 0.88 -12.42 16 17 H 0.06 3.96 8.06 -2.91 -0.02 3.94 16 18 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 19 N -0.98 -63.70 13.97 21.65 0.30 -63.40 16 20 Si 0.95 47.27 27.74 68.60 1.90 49.17 16 21 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 22 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 23 H -0.26 -12.44 6.52 99.48 0.65 -11.80 16 24 C -0.17 -5.55 7.68 31.18 0.24 -5.31 16 25 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.71 6.43 -2.39 -0.02 0.70 16 27 H 0.05 0.71 6.43 -2.39 -0.02 0.70 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 1.45 5.51 -2.39 -0.01 1.43 16 31 H 0.05 1.06 6.43 -2.39 -0.02 1.05 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.10 6.43 -2.39 -0.02 1.08 16 35 H 0.05 1.47 5.51 -2.39 -0.01 1.45 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.42 5.18 8.73 -92.71 -0.81 4.37 16 39 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.13 2.23 8.12 -2.39 -0.02 2.21 16 41 H 0.36 16.99 5.76 -92.71 -0.53 16.46 16 42 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -74.31 338.85 2.67 -71.64 By element: Atomic # 1 Polarization: 28.30 SS G_CDS: -0.41 Total: 27.89 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.91 Total: -12.40 kcal Atomic # 7 Polarization: -113.26 SS G_CDS: -3.69 Total: -116.96 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.03 Total: -19.34 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.17 kcal Total: -74.31 2.67 -71.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661426609.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.006 kcal (2) G-P(sol) polarization free energy of solvation -74.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds