Wall clock time and date at job start Mon Mar 30 2020 00:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47066 * 2 1 4 4 C 1.53003 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55883 * 29.31294 * 4 3 2 6 6 C 1.52997 * 117.50118 * 243.62432 * 4 3 2 7 7 C 1.53002 * 60.00150 * 252.50562 * 6 4 3 8 8 H 1.09003 * 117.49467 * 107.50062 * 7 6 4 9 9 C 1.50692 * 117.50421 * 252.50956 * 7 6 4 10 10 O 1.21287 * 119.99851 * 68.60491 * 9 7 6 11 11 N 1.34773 * 120.00114 * 248.61000 * 9 7 6 12 12 C 1.46505 * 120.00345 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47269 * 179.97438 * 12 11 9 14 14 N 1.46505 * 109.46798 * 179.97438 * 13 12 11 15 15 C 1.36932 * 119.99857 * 269.99384 * 14 13 12 16 16 H 1.08005 * 120.00056 * 38.13888 * 15 14 13 17 17 C 1.38809 * 120.00133 * 218.12958 * 15 14 13 18 18 N 1.31624 * 119.99994 * 21.28661 * 17 15 14 19 19 Si 1.86798 * 120.00101 * 201.28979 * 17 15 14 20 20 H 1.48503 * 109.47378 * 90.00094 * 19 17 15 21 21 H 1.48504 * 109.47220 * 209.99849 * 19 17 15 22 22 H 1.48502 * 109.47263 * 329.99992 * 19 17 15 23 23 C 1.46503 * 119.99695 * 90.00427 * 14 13 12 24 24 C 1.52999 * 109.46529 * 264.49465 * 23 14 13 25 25 H 1.08999 * 109.46435 * 299.99768 * 1 2 3 26 26 H 1.09002 * 109.46883 * 59.99505 * 1 2 3 27 27 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46795 * 239.99836 * 2 1 3 29 29 H 1.09001 * 109.47083 * 119.99982 * 2 1 3 30 30 H 1.08999 * 109.47304 * 60.00764 * 3 2 1 31 31 H 1.09001 * 109.47155 * 299.99938 * 3 2 1 32 32 H 1.09000 * 117.49985 * 145.02003 * 6 4 3 33 33 H 1.09001 * 117.51666 * 359.97438 * 6 4 3 34 34 H 0.97001 * 120.00146 * 359.97438 * 11 9 7 35 35 H 1.08999 * 109.47012 * 59.99350 * 12 11 9 36 36 H 1.08999 * 109.46962 * 299.99733 * 12 11 9 37 37 H 1.08994 * 109.47023 * 59.99859 * 13 12 11 38 38 H 1.08999 * 109.47093 * 299.99876 * 13 12 11 39 39 H 0.97003 * 119.99957 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47118 * 144.49995 * 23 14 13 41 41 H 1.09000 * 109.47569 * 24.49342 * 23 14 13 42 42 H 1.09000 * 109.47729 * 60.00495 * 24 23 14 43 43 H 1.09010 * 109.46991 * 180.02562 * 24 23 14 44 44 H 1.08993 * 109.47728 * 300.00128 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5851 -0.4824 6 6 4.2770 2.0452 1.2150 7 6 4.2766 2.7944 -0.1190 8 1 3.6515 3.6841 -0.1963 9 6 5.5689 2.8388 -0.8928 10 8 6.0113 1.8263 -1.3930 11 7 6.2332 4.0035 -1.0288 12 6 7.4900 4.0466 -1.7805 13 6 8.0337 5.4767 -1.7836 14 7 9.2907 5.5196 -2.5348 15 6 10.4810 5.3127 -1.8901 16 1 10.5482 4.5753 -1.1038 17 6 11.6012 6.0504 -2.2473 18 7 11.4602 7.1999 -2.8729 19 14 13.3088 5.4119 -1.8403 20 1 13.8064 4.5781 -2.9640 21 1 14.2288 6.5584 -1.6296 22 1 13.2489 4.5915 -0.6039 23 6 9.2743 5.7841 -3.9756 24 6 9.3008 4.4577 -4.7378 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.2123 1.5844 1.5330 33 1 3.6525 2.4422 2.0152 34 1 5.8793 4.8134 -0.6290 35 1 7.3111 3.7241 -2.8062 36 1 8.2164 3.3824 -1.3123 37 1 8.2125 5.7996 -0.7580 38 1 7.3072 6.1407 -2.2520 39 1 12.2431 7.7156 -3.1222 40 1 10.1485 6.3762 -4.2464 41 1 8.3690 6.3335 -4.2340 42 1 8.4267 3.8655 -4.4672 43 1 9.2890 4.6544 -5.8099 44 1 10.2060 3.9082 -4.4796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663423525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:53 Heat of formation + Delta-G solvation = -18.939152 kcal Electronic energy + Delta-G solvation = -20230.238500 eV Core-core repulsion = 17183.120740 eV Total energy + Delta-G solvation = -3047.117759 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.83446 -37.39474 -36.21141 -34.23004 -34.03879 -31.51667 -29.99253 -28.05881 -27.28292 -24.65381 -23.51215 -22.19787 -21.57055 -20.70722 -20.42641 -19.64700 -17.22340 -16.56914 -15.71354 -15.44308 -15.17118 -14.79448 -14.57685 -14.07824 -13.73979 -13.67736 -13.51746 -12.96058 -12.75658 -12.41732 -12.21457 -12.15309 -12.07115 -11.54499 -11.35429 -11.25388 -11.20508 -11.06960 -10.84386 -10.64255 -10.53827 -10.36392 -10.13782 -10.05263 -9.81408 -9.68083 -9.50715 -8.64505 -8.50389 -6.61586 -5.79649 -3.41842 2.68479 3.35427 3.37363 3.43638 3.46357 3.77949 4.41427 4.49573 4.62803 4.70058 4.85509 4.91803 5.05774 5.13875 5.28914 5.29303 5.47231 5.53809 5.56015 5.57259 5.61609 5.78210 5.82109 5.86329 5.95443 5.98191 6.01462 6.21147 6.28456 6.34592 6.56047 6.62570 6.71445 6.79421 6.90338 6.99653 7.28612 7.72487 7.81677 7.82888 8.48296 8.52966 9.16942 9.77842 10.35747 11.18930 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036791 B = 0.003002 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.880858 B = 9325.401993 C = 9563.573972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.090 4.090 4 C -0.120 4.120 5 H 0.117 0.883 6 C -0.150 4.150 7 C -0.189 4.189 8 H 0.121 0.879 9 C 0.536 3.464 10 O -0.547 6.547 11 N -0.720 5.720 12 C 0.095 3.905 13 C 0.140 3.860 14 N -0.579 5.579 15 C -0.263 4.263 16 H 0.060 0.940 17 C 0.014 3.986 18 N -0.886 5.886 19 Si 0.899 3.101 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.277 1.277 23 C 0.137 3.863 24 C -0.164 4.164 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.102 0.898 34 H 0.397 0.603 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.255 0.745 40 H 0.093 0.907 41 H 0.023 0.977 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.726 -7.615 5.921 21.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.127 4.127 4 C -0.139 4.139 5 H 0.135 0.865 6 C -0.187 4.187 7 C -0.210 4.210 8 H 0.139 0.861 9 C 0.321 3.679 10 O -0.425 6.425 11 N -0.370 5.370 12 C -0.031 4.031 13 C 0.012 3.988 14 N -0.300 5.300 15 C -0.392 4.392 16 H 0.078 0.922 17 C -0.186 4.186 18 N -0.528 5.528 19 Si 0.728 3.272 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.202 1.202 23 C 0.011 3.989 24 C -0.223 4.223 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.230 -8.166 5.485 20.715 hybrid contribution 0.822 0.150 0.270 0.879 sum -17.407 -8.017 5.755 20.010 Atomic orbital electron populations 1.21783 0.95940 1.01585 1.01738 1.21506 0.95564 0.96586 1.02382 1.21239 0.92047 0.97290 1.02114 1.22434 0.94496 0.95721 1.01213 0.86494 1.23084 1.03072 1.02245 0.90305 1.22332 0.98084 0.98580 1.02008 0.86120 1.19628 0.84603 0.83539 0.80092 1.90685 1.68763 1.34099 1.48940 1.46041 1.25297 1.10298 1.55367 1.22457 0.83173 1.02114 0.95313 1.20977 0.89440 0.91346 0.97063 1.43681 1.00619 1.82763 1.02912 1.19001 0.86534 1.15128 1.18555 0.92230 1.25196 0.99010 0.94350 1.00085 1.69992 1.28929 1.10930 1.42955 0.86364 0.84295 0.78101 0.78454 1.21197 1.21710 1.20199 1.20976 1.01078 0.93973 0.82827 1.22343 1.00770 1.01149 0.98053 0.92829 0.92744 0.92791 0.91765 0.91823 0.91695 0.91436 0.88324 0.87968 0.76955 0.92164 0.91822 0.92895 0.94380 0.93509 0.88964 0.95838 0.94657 0.94812 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 37.16 0.37 -0.61 16 2 C -0.12 -0.92 5.89 -26.73 -0.16 -1.08 16 3 C -0.09 -0.72 5.50 -26.73 -0.15 -0.87 16 4 C -0.12 -1.25 5.25 -90.62 -0.48 -1.73 16 5 H 0.12 1.46 7.60 -51.93 -0.39 1.06 16 6 C -0.15 -1.46 9.88 -26.73 -0.26 -1.73 16 7 C -0.19 -2.12 5.91 -91.77 -0.54 -2.66 16 8 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.54 8.43 7.61 -10.99 -0.08 8.35 16 10 O -0.55 -10.93 16.26 5.55 0.09 -10.84 16 11 N -0.72 -10.92 5.56 -60.30 -0.33 -11.26 16 12 C 0.09 1.79 6.00 -4.04 -0.02 1.77 16 13 C 0.14 2.83 5.82 -4.04 -0.02 2.81 16 14 N -0.58 -14.25 2.43 -173.24 -0.42 -14.67 16 15 C -0.26 -7.12 9.42 -15.06 -0.14 -7.26 16 16 H 0.06 1.63 7.92 -52.48 -0.42 1.22 16 17 C 0.01 0.39 5.00 -17.43 -0.09 0.30 16 18 N -0.89 -25.28 11.43 55.49 0.63 -24.65 16 19 Si 0.90 21.60 29.60 -169.99 -5.03 16.57 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.14 3.24 6.10 -4.04 -0.02 3.21 16 24 C -0.16 -3.47 10.21 37.16 0.38 -3.09 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 34 H 0.40 4.78 8.47 -40.82 -0.35 4.43 16 35 H 0.06 1.23 6.66 -51.93 -0.35 0.88 16 36 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 37 H 0.05 1.07 8.04 -51.93 -0.42 0.66 16 38 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.09 2.46 5.53 -51.93 -0.29 2.17 16 41 H 0.02 0.51 7.83 -51.93 -0.41 0.11 16 42 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 43 H 0.03 0.63 8.14 -51.92 -0.42 0.20 16 44 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -30.98 359.45 -8.85 -39.83 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.98 Total: 2.18 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.22 Total: -2.58 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: -0.12 Total: -50.57 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.09 Total: -10.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.98 -8.85 -39.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663423525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.891 kcal (2) G-P(sol) polarization free energy of solvation -30.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds