Wall clock time and date at job start Mon Mar 30 2020 00:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47066 * 2 1 4 4 C 1.53003 * 109.47066 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55883 * 29.31294 * 4 3 2 6 6 C 1.52997 * 117.50118 * 243.62432 * 4 3 2 7 7 C 1.53002 * 60.00150 * 252.50562 * 6 4 3 8 8 H 1.09003 * 117.49467 * 107.50062 * 7 6 4 9 9 C 1.50692 * 117.50421 * 252.50956 * 7 6 4 10 10 O 1.21287 * 119.99851 * 68.60491 * 9 7 6 11 11 N 1.34773 * 120.00114 * 248.61000 * 9 7 6 12 12 C 1.46505 * 120.00345 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47269 * 179.97438 * 12 11 9 14 14 N 1.46505 * 109.46798 * 179.97438 * 13 12 11 15 15 C 1.36932 * 119.99857 * 269.99384 * 14 13 12 16 16 H 1.08005 * 120.00056 * 38.13888 * 15 14 13 17 17 C 1.38809 * 120.00133 * 218.12958 * 15 14 13 18 18 N 1.31624 * 119.99994 * 21.28661 * 17 15 14 19 19 Si 1.86798 * 120.00101 * 201.28979 * 17 15 14 20 20 H 1.48503 * 109.47378 * 90.00094 * 19 17 15 21 21 H 1.48504 * 109.47220 * 209.99849 * 19 17 15 22 22 H 1.48502 * 109.47263 * 329.99992 * 19 17 15 23 23 C 1.46503 * 119.99695 * 90.00427 * 14 13 12 24 24 C 1.52999 * 109.46529 * 264.49465 * 23 14 13 25 25 H 1.08999 * 109.46435 * 299.99768 * 1 2 3 26 26 H 1.09002 * 109.46883 * 59.99505 * 1 2 3 27 27 H 1.08998 * 109.47342 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46795 * 239.99836 * 2 1 3 29 29 H 1.09001 * 109.47083 * 119.99982 * 2 1 3 30 30 H 1.08999 * 109.47304 * 60.00764 * 3 2 1 31 31 H 1.09001 * 109.47155 * 299.99938 * 3 2 1 32 32 H 1.09000 * 117.49985 * 145.02003 * 6 4 3 33 33 H 1.09001 * 117.51666 * 359.97438 * 6 4 3 34 34 H 0.97001 * 120.00146 * 359.97438 * 11 9 7 35 35 H 1.08999 * 109.47012 * 59.99350 * 12 11 9 36 36 H 1.08999 * 109.46962 * 299.99733 * 12 11 9 37 37 H 1.08994 * 109.47023 * 59.99859 * 13 12 11 38 38 H 1.08999 * 109.47093 * 299.99876 * 13 12 11 39 39 H 0.97003 * 119.99957 * 179.97438 * 18 17 15 40 40 H 1.09001 * 109.47118 * 144.49995 * 23 14 13 41 41 H 1.09000 * 109.47569 * 24.49342 * 23 14 13 42 42 H 1.09000 * 109.47729 * 60.00495 * 24 23 14 43 43 H 1.09010 * 109.46991 * 180.02562 * 24 23 14 44 44 H 1.08993 * 109.47728 * 300.00128 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5851 -0.4824 6 6 4.2770 2.0452 1.2150 7 6 4.2766 2.7944 -0.1190 8 1 3.6515 3.6841 -0.1963 9 6 5.5689 2.8388 -0.8928 10 8 6.0113 1.8263 -1.3930 11 7 6.2332 4.0035 -1.0288 12 6 7.4900 4.0466 -1.7805 13 6 8.0337 5.4767 -1.7836 14 7 9.2907 5.5196 -2.5348 15 6 10.4810 5.3127 -1.8901 16 1 10.5482 4.5753 -1.1038 17 6 11.6012 6.0504 -2.2473 18 7 11.4602 7.1999 -2.8729 19 14 13.3088 5.4119 -1.8403 20 1 13.8064 4.5781 -2.9640 21 1 14.2288 6.5584 -1.6296 22 1 13.2489 4.5915 -0.6039 23 6 9.2743 5.7841 -3.9756 24 6 9.3008 4.4577 -4.7378 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 5.2123 1.5844 1.5330 33 1 3.6525 2.4422 2.0152 34 1 5.8793 4.8134 -0.6290 35 1 7.3111 3.7241 -2.8062 36 1 8.2164 3.3824 -1.3123 37 1 8.2125 5.7996 -0.7580 38 1 7.3072 6.1407 -2.2520 39 1 12.2431 7.7156 -3.1222 40 1 10.1485 6.3762 -4.2464 41 1 8.3690 6.3335 -4.2340 42 1 8.4267 3.8655 -4.4672 43 1 9.2890 4.6544 -5.8099 44 1 10.2060 3.9082 -4.4796 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663423525.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:52 Heat of formation + Delta-G solvation = -36.847286 kcal Electronic energy + Delta-G solvation = -20231.015055 eV Core-core repulsion = 17183.120740 eV Total energy + Delta-G solvation = -3047.894314 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.03162 -38.50988 -37.84402 -35.75809 -34.71384 -33.50536 -31.69173 -29.50662 -28.23989 -26.37530 -24.88546 -23.21426 -22.73583 -22.22457 -21.48343 -20.90292 -18.70865 -18.18557 -17.20582 -16.62518 -16.51896 -16.06985 -15.76585 -15.53177 -15.43026 -15.02585 -14.50242 -14.15954 -13.97473 -13.89242 -13.69352 -13.22173 -13.11412 -12.99771 -12.90144 -12.76285 -12.43782 -12.32219 -12.19359 -12.00770 -11.92733 -11.66211 -11.62716 -11.49056 -11.18226 -11.00724 -10.79524 -10.55297 -10.06351 -8.62604 -7.84850 -5.51432 1.43743 1.47137 1.49988 1.54551 2.14043 2.50652 2.87769 3.20563 3.58359 3.75513 3.80714 3.89693 4.16614 4.20811 4.24259 4.30360 4.32689 4.41685 4.52974 4.64962 4.66077 4.83814 4.86745 4.89202 4.90324 4.96175 5.01545 5.06707 5.09168 5.12733 5.21597 5.24186 5.38292 5.42403 5.44720 5.51051 5.54257 5.64827 5.83374 6.44606 6.60321 7.14097 7.28062 7.81125 8.33206 9.09667 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036791 B = 0.003002 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.880858 B = 9325.401993 C = 9563.573972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C -0.082 4.082 4 C -0.122 4.122 5 H 0.088 0.912 6 C -0.136 4.136 7 C -0.191 4.191 8 H 0.154 0.846 9 C 0.530 3.470 10 O -0.597 6.597 11 N -0.709 5.709 12 C 0.117 3.883 13 C 0.145 3.855 14 N -0.597 5.597 15 C -0.270 4.270 16 H 0.050 0.950 17 C -0.030 4.030 18 N -0.912 5.912 19 Si 0.955 3.045 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.272 1.272 23 C 0.135 3.865 24 C -0.151 4.151 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.136 0.864 34 H 0.416 0.584 35 H 0.046 0.954 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.063 0.937 41 H 0.040 0.960 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.681 -7.361 6.927 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.119 4.119 4 C -0.141 4.141 5 H 0.106 0.894 6 C -0.173 4.173 7 C -0.212 4.212 8 H 0.172 0.828 9 C 0.318 3.682 10 O -0.478 6.478 11 N -0.360 5.360 12 C -0.010 4.010 13 C 0.018 3.982 14 N -0.318 5.318 15 C -0.401 4.401 16 H 0.068 0.932 17 C -0.229 4.229 18 N -0.555 5.555 19 Si 0.783 3.217 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.197 1.197 23 C 0.010 3.990 24 C -0.210 4.210 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.253 0.747 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.077 0.923 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -20.222 -7.897 6.515 22.666 hybrid contribution 1.384 0.035 -0.043 1.386 sum -18.838 -7.862 6.472 21.414 Atomic orbital electron populations 1.21764 0.94858 1.01985 1.02214 1.21509 0.96480 0.96359 1.01852 1.21227 0.89894 0.97678 1.03136 1.22449 0.96033 0.94211 1.01413 0.89363 1.23200 1.02729 1.00955 0.90421 1.22352 0.96014 1.00392 1.02440 0.82836 1.20463 0.85693 0.82542 0.79484 1.90665 1.70321 1.35783 1.51029 1.45856 1.23952 1.11371 1.54847 1.21900 0.84125 1.00334 0.94652 1.21001 0.88282 0.92259 0.96694 1.43885 1.01340 1.82966 1.03615 1.19124 0.88018 1.14611 1.18310 0.93223 1.25822 1.01923 0.94571 1.00541 1.70095 1.29500 1.11801 1.44152 0.85478 0.80556 0.77461 0.78201 1.21304 1.21524 1.19664 1.20934 1.00451 0.94851 0.82800 1.22178 0.99873 0.99607 0.99349 0.91913 0.92669 0.92514 0.93032 0.91766 0.89673 0.91276 0.89942 0.84601 0.74749 0.93583 0.94909 0.92996 0.92221 0.93727 0.91924 0.94200 0.94051 0.92257 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.91 16 2 C -0.12 -1.68 5.89 30.59 0.18 -1.50 16 3 C -0.08 -1.11 5.50 30.59 0.17 -0.94 16 4 C -0.12 -2.37 5.25 -10.79 -0.06 -2.43 16 5 H 0.09 2.25 7.60 -2.39 -0.02 2.23 16 6 C -0.14 -2.33 9.88 30.59 0.30 -2.03 16 7 C -0.19 -3.87 5.91 -11.54 -0.07 -3.94 16 8 H 0.15 2.12 8.14 -2.39 -0.02 2.10 16 9 C 0.53 16.34 7.61 87.65 0.67 17.01 16 10 O -0.60 -24.37 16.26 -3.05 -0.05 -24.42 16 11 N -0.71 -20.72 5.56 -463.07 -2.57 -23.29 16 12 C 0.12 4.41 6.00 86.38 0.52 4.92 16 13 C 0.14 5.75 5.82 86.38 0.50 6.25 16 14 N -0.60 -29.40 2.43 -702.01 -1.71 -31.11 16 15 C -0.27 -14.81 9.42 84.03 0.79 -14.02 16 16 H 0.05 2.77 7.92 -2.91 -0.02 2.75 16 17 C -0.03 -1.68 5.00 84.86 0.42 -1.26 16 18 N -0.91 -52.52 11.43 21.65 0.25 -52.28 16 19 Si 0.96 44.77 29.60 68.60 2.03 46.80 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 23 C 0.14 6.35 6.10 86.38 0.53 6.88 16 24 C -0.15 -6.31 10.21 71.98 0.73 -5.57 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.08 0.84 7.88 -2.39 -0.02 0.82 16 31 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.14 1.45 8.03 -2.39 -0.02 1.43 16 34 H 0.42 9.05 8.47 -92.71 -0.79 8.26 16 35 H 0.05 1.88 6.66 -2.39 -0.02 1.86 16 36 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 38 H 0.06 2.12 7.86 -2.39 -0.02 2.11 16 39 H 0.25 14.07 8.31 -92.71 -0.77 13.29 16 40 H 0.06 3.37 5.53 -2.39 -0.01 3.36 16 41 H 0.04 1.70 7.83 -2.39 -0.02 1.68 16 42 H 0.04 1.65 6.66 -2.39 -0.02 1.63 16 43 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.06 359.45 3.53 -64.53 By element: Atomic # 1 Polarization: 17.11 SS G_CDS: 0.17 Total: 17.28 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.41 Total: 2.48 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.03 Total: -106.67 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.42 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -68.06 3.53 -64.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663423525.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.685 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds