Wall clock time and date at job start Mon Mar 30 2020 00:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46748 * 2 1 4 4 C 1.52991 * 109.47249 * 119.99733 * 2 1 3 5 5 C 1.50704 * 109.47405 * 173.54773 * 4 2 1 6 6 O 1.21277 * 119.99510 * 354.51103 * 5 4 2 7 7 N 1.34770 * 119.99960 * 174.51327 * 5 4 2 8 8 C 1.47430 * 125.65165 * 5.00415 * 7 5 4 9 9 C 1.54911 * 104.83029 * 204.09017 * 8 7 5 10 10 C 1.55159 * 101.58253 * 322.98895 * 9 8 7 11 11 C 1.47021 * 125.64616 * 184.68909 * 7 5 4 12 12 H 1.09006 * 109.88342 * 59.56469 * 11 7 5 13 13 C 1.52998 * 109.88639 * 298.39782 * 11 7 5 14 14 N 1.46497 * 109.47244 * 174.26077 * 13 11 7 15 15 C 1.46499 * 120.00102 * 95.60832 * 14 13 11 16 16 C 1.36933 * 120.00515 * 275.60555 * 14 13 11 17 17 H 1.08010 * 119.99480 * 18.72536 * 16 14 13 18 18 C 1.38813 * 120.00725 * 198.72914 * 16 14 13 19 19 N 1.31617 * 119.99587 * 12.58097 * 18 16 14 20 20 Si 1.86797 * 120.00344 * 192.58808 * 18 16 14 21 21 H 1.48492 * 109.47289 * 94.97699 * 20 18 16 22 22 H 1.48503 * 109.46800 * 214.98142 * 20 18 16 23 23 H 1.48498 * 109.46957 * 334.97709 * 20 18 16 24 24 H 1.08993 * 109.47515 * 299.99855 * 1 2 3 25 25 H 1.09000 * 109.46712 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47219 * 60.00223 * 1 2 3 27 27 H 1.08996 * 109.47086 * 240.00419 * 2 1 3 28 28 H 1.08993 * 109.46994 * 59.99826 * 3 2 1 29 29 H 1.08998 * 109.46507 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46876 * 299.99349 * 3 2 1 31 31 H 1.09005 * 109.47539 * 293.54698 * 4 2 1 32 32 H 1.08998 * 109.47405 * 53.54468 * 4 2 1 33 33 H 1.08997 * 110.36131 * 322.92805 * 8 7 5 34 34 H 1.09004 * 110.36605 * 85.25326 * 8 7 5 35 35 H 1.08997 * 111.00608 * 81.06146 * 9 8 7 36 36 H 1.09000 * 111.00372 * 204.91630 * 9 8 7 37 37 H 1.08998 * 110.71847 * 153.87071 * 10 9 8 38 38 H 1.09002 * 110.72122 * 277.13844 * 10 9 8 39 39 H 1.08996 * 109.47270 * 294.26681 * 13 11 7 40 40 H 1.09005 * 109.46840 * 54.26054 * 13 11 7 41 41 H 1.08995 * 109.47401 * 94.10191 * 15 14 13 42 42 H 1.08998 * 109.47654 * 214.10726 * 15 14 13 43 43 H 1.09000 * 109.46868 * 334.10384 * 15 14 13 44 44 H 0.97002 * 120.00208 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5386 -0.8609 1.1720 6 8 4.1288 -0.5171 0.1699 7 7 4.2227 -1.3681 2.2165 8 6 3.6274 -1.9190 3.4477 9 6 4.7359 -1.7795 4.5208 10 6 6.0119 -2.0837 3.6921 11 6 5.6862 -1.4695 2.3142 12 1 6.1325 -0.4779 2.2377 13 6 6.2209 -2.3714 1.2000 14 7 7.6857 -2.3572 1.2209 15 6 8.4184 -3.4098 1.9288 16 6 8.3700 -1.3600 0.5787 17 1 7.8675 -0.4391 0.3217 18 6 9.7094 -1.5326 0.2577 19 7 10.2573 -2.7265 0.3403 20 14 10.7344 -0.0705 -0.2911 21 1 11.4531 0.4969 0.8779 22 1 11.7191 -0.5115 -1.3114 23 1 9.8456 0.9653 -0.8762 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8901 31 1 1.7741 -0.1450 2.1355 32 1 1.5855 -1.7100 1.3089 33 1 2.7475 -1.3431 3.7340 34 1 3.3661 -2.9678 3.3063 35 1 4.7641 -0.7673 4.9242 36 1 4.6032 -2.5121 5.3170 37 1 6.8834 -1.6021 4.1354 38 1 6.1673 -3.1589 3.6040 39 1 5.8652 -3.3900 1.3548 40 1 5.8677 -2.0058 0.2357 41 1 8.6815 -4.2030 1.2290 42 1 9.3269 -2.9917 2.3623 43 1 7.7920 -3.8181 2.7219 44 1 11.1932 -2.8472 0.1157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674435588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:13 Heat of formation + Delta-G solvation = -23.516984 kcal Electronic energy + Delta-G solvation = -21731.804002 eV Core-core repulsion = 18684.487733 eV Total energy + Delta-G solvation = -3047.316269 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.98799 -37.65056 -35.36157 -35.22257 -31.71855 -31.23055 -29.21931 -27.73649 -27.11476 -25.97967 -25.07169 -22.85572 -21.12687 -20.81844 -19.85088 -18.48065 -16.89469 -16.50086 -16.06821 -15.56610 -14.66409 -14.46106 -14.22260 -13.88811 -13.60988 -13.36787 -13.02567 -12.91485 -12.63945 -12.47123 -12.26850 -11.93812 -11.85033 -11.69993 -11.19062 -11.04607 -10.96853 -10.85547 -10.81648 -10.75481 -10.64574 -10.58184 -10.29371 -10.05035 -9.75845 -9.74453 -9.23161 -8.50039 -8.24360 -6.65796 -5.61505 -3.03862 2.98049 3.28305 3.45908 3.52226 3.55664 4.58805 4.63336 4.73709 4.76451 4.87897 5.04502 5.08552 5.29856 5.42905 5.47817 5.49336 5.56086 5.59712 5.64922 5.67276 5.72478 5.80084 5.84831 5.91559 5.93404 6.08410 6.09958 6.29453 6.30817 6.37112 6.46088 6.54533 6.65310 6.80838 6.89402 7.15169 7.50189 7.80474 7.90779 7.94999 8.48719 8.57195 9.36217 9.99061 10.45636 11.44113 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.005404 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.461791 B = 5179.713861 C = 6142.973683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 C -0.150 4.150 4 C -0.131 4.131 5 C 0.521 3.479 6 O -0.526 6.526 7 N -0.616 5.616 8 C 0.101 3.899 9 C -0.136 4.136 10 C -0.116 4.116 11 C 0.115 3.885 12 H 0.074 0.926 13 C 0.146 3.854 14 N -0.599 5.599 15 C 0.165 3.835 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.003 4.003 19 N -0.914 5.914 20 Si 0.903 3.097 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.279 1.279 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.071 0.929 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.023 0.977 42 H 0.049 0.951 43 H -0.004 1.004 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.468 2.023 7.991 20.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.102 4.102 3 C -0.208 4.208 4 C -0.171 4.171 5 C 0.309 3.691 6 O -0.402 6.402 7 N -0.352 5.352 8 C -0.023 4.023 9 C -0.174 4.174 10 C -0.154 4.154 11 C 0.010 3.990 12 H 0.092 0.908 13 C 0.018 3.982 14 N -0.323 5.323 15 C 0.021 3.979 16 C -0.373 4.373 17 H 0.088 0.912 18 C -0.200 4.200 19 N -0.561 5.561 20 Si 0.734 3.266 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.205 1.205 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.067 0.933 43 H 0.014 0.986 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -18.000 2.187 7.323 19.555 hybrid contribution 0.642 0.674 -0.139 0.941 sum -17.358 2.861 7.184 19.002 Atomic orbital electron populations 1.21853 0.95231 1.01525 1.01727 1.20880 0.94723 0.96924 0.97657 1.21900 1.03051 0.95039 1.00761 1.21750 0.92588 1.02401 1.00378 1.20284 0.89411 0.77311 0.82079 1.90731 1.70634 1.49107 1.29753 1.48737 1.08031 1.61072 1.17313 1.22268 0.96581 0.98517 0.84900 1.22802 0.95411 1.02119 0.97078 1.22635 0.97013 1.01641 0.94084 1.22589 0.77851 1.01406 0.97145 0.90826 1.21008 0.85278 0.95309 0.96623 1.43878 0.98997 1.29313 1.60063 1.20860 0.93777 0.90939 0.92362 1.19289 0.92908 0.94041 1.31061 0.91164 1.24917 0.98168 0.96365 1.00536 1.70104 1.12338 1.19771 1.53867 0.86228 0.80214 0.82243 0.77937 1.21696 1.21849 1.20454 0.92856 0.92796 0.92518 0.90113 0.93541 0.90956 0.93001 0.89593 0.89348 0.91242 0.91672 0.91043 0.90368 0.90272 0.90727 0.94787 0.92201 0.95853 0.93264 0.98605 0.93972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.19 37.16 0.34 -0.91 16 2 C -0.08 -0.95 2.56 -90.62 -0.23 -1.18 16 3 C -0.15 -1.84 8.96 37.16 0.33 -1.51 16 4 C -0.13 -1.48 4.20 -27.89 -0.12 -1.60 16 5 C 0.52 8.41 7.29 -10.99 -0.08 8.33 16 6 O -0.53 -10.85 13.06 5.56 0.07 -10.78 16 7 N -0.62 -9.54 3.06 -163.00 -0.50 -10.04 16 8 C 0.10 1.12 6.74 -2.52 -0.02 1.10 16 9 C -0.14 -1.51 7.09 -24.58 -0.17 -1.69 16 10 C -0.12 -1.78 5.75 -24.89 -0.14 -1.92 16 11 C 0.12 2.15 3.10 -66.95 -0.21 1.94 16 12 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 13 C 0.15 3.29 5.09 -4.04 -0.02 3.27 16 14 N -0.60 -15.70 2.81 -181.12 -0.51 -16.21 16 15 C 0.17 4.15 8.63 59.85 0.52 4.66 16 16 C -0.24 -7.05 9.70 -15.06 -0.15 -7.20 16 17 H 0.07 2.07 7.86 -52.48 -0.41 1.66 16 18 C 0.00 -0.09 5.12 -17.43 -0.09 -0.17 16 19 N -0.91 -27.56 10.44 55.49 0.58 -26.98 16 20 Si 0.90 22.96 29.57 -169.99 -5.03 17.93 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.08 7.82 -51.93 -0.41 0.68 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.07 1.12 6.28 -51.93 -0.33 0.79 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.81 7.71 -51.93 -0.40 0.41 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.60 7.31 -51.93 -0.38 0.22 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.17 6.30 -51.93 -0.33 0.84 16 39 H 0.03 0.72 7.89 -51.93 -0.41 0.31 16 40 H 0.06 1.51 6.49 -51.93 -0.34 1.18 16 41 H 0.02 0.64 7.52 -51.93 -0.39 0.25 16 42 H 0.05 1.33 6.96 -51.93 -0.36 0.97 16 43 H 0.00 -0.10 6.25 -51.93 -0.32 -0.42 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 339.94 15.07 5.12 5.12 Total: -1.00 -32.82 339.94 -8.16 -40.98 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -7.86 Total: -3.14 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.04 Total: 3.11 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.43 Total: -53.23 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.03 Total: 17.93 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.82 -8.16 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674435588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.463 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds