Wall clock time and date at job start Mon Mar 30 2020 00:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53009 * 109.46748 * 2 1 4 4 C 1.52991 * 109.47249 * 119.99733 * 2 1 3 5 5 C 1.50704 * 109.47405 * 173.54773 * 4 2 1 6 6 O 1.21277 * 119.99510 * 354.51103 * 5 4 2 7 7 N 1.34770 * 119.99960 * 174.51327 * 5 4 2 8 8 C 1.47430 * 125.65165 * 5.00415 * 7 5 4 9 9 C 1.54911 * 104.83029 * 204.09017 * 8 7 5 10 10 C 1.55159 * 101.58253 * 322.98895 * 9 8 7 11 11 C 1.47021 * 125.64616 * 184.68909 * 7 5 4 12 12 H 1.09006 * 109.88342 * 59.56469 * 11 7 5 13 13 C 1.52998 * 109.88639 * 298.39782 * 11 7 5 14 14 N 1.46497 * 109.47244 * 174.26077 * 13 11 7 15 15 C 1.46499 * 120.00102 * 95.60832 * 14 13 11 16 16 C 1.36933 * 120.00515 * 275.60555 * 14 13 11 17 17 H 1.08010 * 119.99480 * 18.72536 * 16 14 13 18 18 C 1.38813 * 120.00725 * 198.72914 * 16 14 13 19 19 N 1.31617 * 119.99587 * 12.58097 * 18 16 14 20 20 Si 1.86797 * 120.00344 * 192.58808 * 18 16 14 21 21 H 1.48492 * 109.47289 * 94.97699 * 20 18 16 22 22 H 1.48503 * 109.46800 * 214.98142 * 20 18 16 23 23 H 1.48498 * 109.46957 * 334.97709 * 20 18 16 24 24 H 1.08993 * 109.47515 * 299.99855 * 1 2 3 25 25 H 1.09000 * 109.46712 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47219 * 60.00223 * 1 2 3 27 27 H 1.08996 * 109.47086 * 240.00419 * 2 1 3 28 28 H 1.08993 * 109.46994 * 59.99826 * 3 2 1 29 29 H 1.08998 * 109.46507 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.46876 * 299.99349 * 3 2 1 31 31 H 1.09005 * 109.47539 * 293.54698 * 4 2 1 32 32 H 1.08998 * 109.47405 * 53.54468 * 4 2 1 33 33 H 1.08997 * 110.36131 * 322.92805 * 8 7 5 34 34 H 1.09004 * 110.36605 * 85.25326 * 8 7 5 35 35 H 1.08997 * 111.00608 * 81.06146 * 9 8 7 36 36 H 1.09000 * 111.00372 * 204.91630 * 9 8 7 37 37 H 1.08998 * 110.71847 * 153.87071 * 10 9 8 38 38 H 1.09002 * 110.72122 * 277.13844 * 10 9 8 39 39 H 1.08996 * 109.47270 * 294.26681 * 13 11 7 40 40 H 1.09005 * 109.46840 * 54.26054 * 13 11 7 41 41 H 1.08995 * 109.47401 * 94.10191 * 15 14 13 42 42 H 1.08998 * 109.47654 * 214.10726 * 15 14 13 43 43 H 1.09000 * 109.46868 * 334.10384 * 15 14 13 44 44 H 0.97002 * 120.00208 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5386 -0.8609 1.1720 6 8 4.1288 -0.5171 0.1699 7 7 4.2227 -1.3681 2.2165 8 6 3.6274 -1.9190 3.4477 9 6 4.7359 -1.7795 4.5208 10 6 6.0119 -2.0837 3.6921 11 6 5.6862 -1.4695 2.3142 12 1 6.1325 -0.4779 2.2377 13 6 6.2209 -2.3714 1.2000 14 7 7.6857 -2.3572 1.2209 15 6 8.4184 -3.4098 1.9288 16 6 8.3700 -1.3600 0.5787 17 1 7.8675 -0.4391 0.3217 18 6 9.7094 -1.5326 0.2577 19 7 10.2573 -2.7265 0.3403 20 14 10.7344 -0.0705 -0.2911 21 1 11.4531 0.4969 0.8779 22 1 11.7191 -0.5115 -1.3114 23 1 9.8456 0.9653 -0.8762 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.6766 1.9564 0.8899 29 1 3.1299 1.4426 -0.0005 30 1 1.6767 1.9564 -0.8901 31 1 1.7741 -0.1450 2.1355 32 1 1.5855 -1.7100 1.3089 33 1 2.7475 -1.3431 3.7340 34 1 3.3661 -2.9678 3.3063 35 1 4.7641 -0.7673 4.9242 36 1 4.6032 -2.5121 5.3170 37 1 6.8834 -1.6021 4.1354 38 1 6.1673 -3.1589 3.6040 39 1 5.8652 -3.3900 1.3548 40 1 5.8677 -2.0058 0.2357 41 1 8.6815 -4.2030 1.2290 42 1 9.3269 -2.9917 2.3623 43 1 7.7920 -3.8181 2.7219 44 1 11.1932 -2.8472 0.1157 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674435588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:27:13 Heat of formation + Delta-G solvation = -43.883914 kcal Electronic energy + Delta-G solvation = -21732.687178 eV Core-core repulsion = 18684.487733 eV Total energy + Delta-G solvation = -3048.199445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24638 -38.94810 -37.14521 -36.38100 -33.60349 -32.57854 -30.77232 -28.76737 -28.04325 -27.95130 -26.78874 -24.17946 -22.77406 -22.10097 -20.97716 -19.71605 -18.72922 -17.98225 -17.42225 -16.73422 -16.61661 -15.69714 -15.47171 -15.31377 -15.16487 -14.83894 -14.57729 -14.20611 -13.82751 -13.66949 -13.53751 -13.08763 -13.05965 -12.96640 -12.80948 -12.68985 -12.56965 -12.35441 -12.14843 -12.10042 -11.96345 -11.91230 -11.72034 -11.62013 -11.54957 -11.46069 -10.66958 -10.58943 -9.64831 -8.78506 -7.86293 -5.31456 1.40292 1.41265 1.51690 1.75644 2.09083 2.48798 3.25624 3.56227 3.68327 3.81403 3.86818 3.99944 4.02454 4.08999 4.34755 4.40281 4.43106 4.53182 4.63598 4.72945 4.73977 4.78210 4.83047 4.85987 4.92985 5.02549 5.04878 5.07831 5.11689 5.14730 5.19318 5.31280 5.33609 5.43173 5.46355 5.52972 5.55543 5.60516 5.71422 6.28297 6.71996 7.13284 7.33122 7.84920 8.24937 9.16748 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019353 B = 0.005404 C = 0.004557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.461791 B = 5179.713861 C = 6142.973683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.085 4.085 3 C -0.148 4.148 4 C -0.118 4.118 5 C 0.508 3.492 6 O -0.585 6.585 7 N -0.618 5.618 8 C 0.096 3.904 9 C -0.121 4.121 10 C -0.113 4.113 11 C 0.125 3.875 12 H 0.031 0.969 13 C 0.152 3.848 14 N -0.614 5.614 15 C 0.182 3.818 16 C -0.256 4.256 17 H 0.052 0.948 18 C -0.051 4.051 19 N -0.939 5.939 20 Si 0.967 3.033 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.280 1.280 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.030 0.970 30 H 0.055 0.945 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.021 0.979 41 H -0.005 1.005 42 H 0.025 0.975 43 H 0.037 0.963 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.218 1.965 10.409 23.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.158 4.158 5 C 0.299 3.701 6 O -0.466 6.466 7 N -0.352 5.352 8 C -0.025 4.025 9 C -0.159 4.159 10 C -0.151 4.151 11 C 0.018 3.982 12 H 0.049 0.951 13 C 0.025 3.975 14 N -0.338 5.338 15 C 0.038 3.962 16 C -0.386 4.386 17 H 0.070 0.930 18 C -0.246 4.246 19 N -0.586 5.586 20 Si 0.795 3.205 21 H -0.206 1.206 22 H -0.215 1.215 23 H -0.205 1.205 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.131 0.869 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.039 0.961 41 H 0.013 0.987 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -20.805 2.119 9.788 23.090 hybrid contribution 1.457 0.684 -0.932 1.860 sum -19.348 2.803 8.856 21.462 Atomic orbital electron populations 1.21779 0.92261 1.02691 1.02719 1.20885 0.96998 0.95790 0.96723 1.21864 1.00320 0.96342 1.02016 1.21794 0.88213 1.04410 1.01340 1.21364 0.91533 0.75999 0.81186 1.90716 1.72209 1.51417 1.32209 1.48860 1.06577 1.60857 1.18947 1.22641 0.97502 1.00005 0.82383 1.22814 0.92273 1.03561 0.97245 1.22538 0.99070 1.00932 0.92572 1.22073 0.80229 0.98228 0.97643 0.95079 1.21013 0.83408 0.96626 0.96462 1.44056 1.00517 1.28986 1.60272 1.20606 0.93618 0.89573 0.92409 1.19361 0.93551 0.94288 1.31428 0.92964 1.25635 0.98995 0.98949 1.00987 1.70254 1.12408 1.21291 1.54663 0.85255 0.78440 0.79116 0.77704 1.20561 1.21500 1.20505 0.91018 0.91541 0.92419 0.93199 0.91481 0.95104 0.92557 0.86481 0.86549 0.87442 0.89858 0.90459 0.86918 0.91606 0.90721 0.93448 0.96096 0.98703 0.95634 0.94430 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.19 71.98 0.66 -1.26 16 2 C -0.08 -1.84 2.56 -10.79 -0.03 -1.87 16 3 C -0.15 -3.60 8.96 71.99 0.64 -2.95 16 4 C -0.12 -2.34 4.20 29.85 0.13 -2.21 16 5 C 0.51 16.35 7.29 87.66 0.64 16.98 16 6 O -0.59 -25.75 13.06 -3.02 -0.04 -25.79 16 7 N -0.62 -18.45 3.06 -788.02 -2.41 -20.87 16 8 C 0.10 1.70 6.74 86.85 0.59 2.29 16 9 C -0.12 -2.20 7.09 31.99 0.23 -1.97 16 10 C -0.11 -3.30 5.75 31.79 0.18 -3.12 16 11 C 0.12 4.73 3.10 45.34 0.14 4.87 16 12 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 13 C 0.15 7.11 5.09 86.38 0.44 7.55 16 14 N -0.61 -33.48 2.81 -726.95 -2.05 -35.52 16 15 C 0.18 9.36 8.63 127.77 1.10 10.46 16 16 C -0.26 -15.54 9.70 84.03 0.81 -14.72 16 17 H 0.05 3.29 7.86 -2.91 -0.02 3.27 16 18 C -0.05 -3.07 5.12 84.86 0.43 -2.64 16 19 N -0.94 -58.13 10.44 21.65 0.23 -57.90 16 20 Si 0.97 48.55 29.57 68.60 2.03 50.58 16 21 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 22 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 23 H -0.28 -13.93 7.11 99.48 0.71 -13.23 16 24 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 25 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.05 1.38 7.82 -2.39 -0.02 1.36 16 28 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.03 1.00 6.28 -2.39 -0.02 0.98 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.12 1.64 7.71 -2.38 -0.02 1.62 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.11 1.18 7.31 -2.39 -0.02 1.16 16 34 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.07 2.18 6.30 -2.39 -0.02 2.16 16 39 H 0.05 2.04 7.89 -2.39 -0.02 2.02 16 40 H 0.02 1.12 6.49 -2.38 -0.02 1.11 16 41 H -0.01 -0.30 7.52 -2.39 -0.02 -0.32 16 42 H 0.02 1.40 6.96 -2.39 -0.02 1.38 16 43 H 0.04 1.58 6.25 -2.39 -0.01 1.56 16 44 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -78.00 339.94 4.67 -73.33 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 0.94 Total: 4.76 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.97 Total: 11.41 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -4.23 Total: -114.29 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -0.04 Total: -25.79 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.58 kcal Total: -78.00 4.67 -73.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674435588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.449 kcal (2) G-P(sol) polarization free energy of solvation -78.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds