Wall clock time and date at job start Mon Mar 30 2020 00:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 O 1.21279 * 119.99679 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99979 * 179.97438 * 7 5 4 9 9 H 1.09006 * 110.01655 * 33.61298 * 8 7 5 10 10 C 1.54266 * 110.03609 * 272.17315 * 8 7 5 11 11 C 1.54890 * 104.19275 * 217.10282 * 10 8 7 12 12 C 1.54896 * 102.75034 * 37.94089 * 11 10 8 13 13 H 1.09000 * 110.48471 * 80.73511 * 12 11 10 14 14 C 1.52996 * 110.48485 * 203.37809 * 12 11 10 15 15 N 1.46503 * 109.47147 * 289.77287 * 14 12 11 16 16 C 1.36934 * 119.99855 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00177 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99919 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99864 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46925 * 90.00007 * 20 18 16 22 22 H 1.48496 * 109.47273 * 209.99770 * 20 18 16 23 23 H 1.48494 * 109.47047 * 330.00186 * 20 18 16 24 24 C 1.53876 * 110.03450 * 154.99963 * 8 7 5 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 34 34 H 0.96996 * 120.00204 * 0.02562 * 7 5 4 35 35 H 1.09004 * 110.48302 * 335.77677 * 10 8 7 36 36 H 1.08989 * 110.48849 * 98.42410 * 10 8 7 37 37 H 1.08998 * 110.76028 * 279.62104 * 11 10 8 38 38 H 1.09001 * 110.91302 * 156.32230 * 11 10 8 39 39 H 1.08993 * 109.47314 * 49.77273 * 14 12 11 40 40 H 1.09001 * 109.46848 * 169.77648 * 14 12 11 41 41 H 0.96993 * 120.00190 * 0.02562 * 15 14 12 42 42 H 0.96998 * 119.99597 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.03564 * 238.57598 * 24 8 7 44 44 H 1.09000 * 110.02685 * 0.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6414 -2.1733 -1.1891 6 8 1.0110 -2.5901 -0.2405 7 7 1.9845 -3.0083 -2.1897 8 6 1.5974 -4.4201 -2.1308 9 1 0.6333 -4.5222 -1.6325 10 6 2.6714 -5.2315 -1.3772 11 6 2.7285 -6.5814 -2.1346 12 6 2.5510 -6.1520 -3.6122 13 1 3.4959 -5.7949 -4.0218 14 6 2.0097 -7.3148 -4.4464 15 7 3.0479 -8.3385 -4.5888 16 6 2.7911 -9.4797 -5.3009 17 1 1.8231 -9.6252 -5.7571 18 6 3.7747 -10.4499 -5.4354 19 7 4.9544 -10.2727 -4.8790 20 14 3.4242 -12.0070 -6.4061 21 1 3.7879 -11.7948 -7.8301 22 1 4.2265 -13.1269 -5.8519 23 1 1.9797 -12.3368 -6.3080 24 6 1.5208 -5.0054 -3.5518 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6054 -0.2616 -2.1371 33 1 3.1263 -0.6443 -1.2952 34 1 2.4883 -2.6748 -2.9485 35 1 3.6357 -4.7257 -1.4259 36 1 2.3736 -5.3881 -0.3405 37 1 1.9140 -7.2348 -1.8217 38 1 3.6918 -7.0697 -1.9874 39 1 1.1408 -7.7454 -3.9488 40 1 1.7205 -6.9509 -5.4323 41 1 3.9172 -8.2080 -4.1789 42 1 5.6417 -10.9506 -4.9734 43 1 0.5199 -5.3922 -3.7429 44 1 1.7721 -4.2391 -4.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676903587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:16 Heat of formation + Delta-G solvation = -60.275622 kcal Electronic energy + Delta-G solvation = -20409.005469 eV Core-core repulsion = 17360.095226 eV Total energy + Delta-G solvation = -3048.910243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18087 -38.21178 -35.81323 -34.74296 -33.37036 -31.11810 -28.99966 -28.77072 -27.34318 -26.98699 -24.33050 -22.15692 -21.47985 -20.29856 -20.02618 -19.58882 -17.26179 -17.01932 -16.36591 -15.71901 -15.04988 -14.91504 -14.26874 -14.23340 -13.91725 -13.83896 -13.41926 -13.03572 -12.79403 -12.59621 -12.49607 -12.25040 -12.11889 -11.77206 -11.33478 -11.30850 -11.12592 -11.03362 -10.93286 -10.83907 -10.66974 -10.54075 -10.27025 -10.21927 -9.94518 -9.76264 -9.64566 -9.02888 -8.84353 -6.88791 -5.74550 -3.02585 2.57057 3.12333 3.44688 3.49761 3.51592 4.47215 4.55948 4.59383 4.64935 4.75977 4.82306 5.05622 5.07779 5.21769 5.29958 5.37592 5.43757 5.55505 5.55826 5.63972 5.64635 5.67402 5.69075 5.72516 5.88001 5.90698 5.93048 6.10451 6.12255 6.16920 6.26809 6.27862 6.33001 6.56992 6.58325 6.63802 6.82617 6.96199 7.44612 7.71854 8.17980 8.44886 9.55854 10.14995 10.49650 11.48524 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.063134 B = 0.002730 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.398063 B =10255.359364 C =10321.345379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.081 4.081 3 C -0.148 4.148 4 C -0.139 4.139 5 C 0.510 3.490 6 O -0.539 6.539 7 N -0.725 5.725 8 C 0.140 3.860 9 H 0.089 0.911 10 C -0.133 4.133 11 C -0.111 4.111 12 C -0.097 4.097 13 H 0.074 0.926 14 C 0.160 3.840 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.016 4.016 19 N -0.934 5.934 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.122 4.122 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.399 0.601 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.020 0.980 40 H 0.016 0.984 41 H 0.384 0.616 42 H 0.255 0.745 43 H 0.075 0.925 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 22.431 7.362 24.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.205 4.205 4 C -0.179 4.179 5 C 0.297 3.703 6 O -0.416 6.416 7 N -0.376 5.376 8 C 0.036 3.964 9 H 0.107 0.893 10 C -0.171 4.171 11 C -0.149 4.149 12 C -0.116 4.116 13 H 0.093 0.907 14 C 0.032 3.968 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.212 4.212 19 N -0.583 5.583 20 Si 0.738 3.262 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.161 4.161 25 H 0.070 0.930 26 H 0.094 0.906 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.233 0.767 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.037 0.963 40 H 0.034 0.966 41 H 0.217 0.783 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.184 21.998 7.948 24.194 hybrid contribution 0.493 -0.705 -0.888 1.236 sum -5.692 21.294 7.060 23.144 Atomic orbital electron populations 1.21961 0.94755 1.03449 1.00900 1.20855 0.96643 0.95232 0.97257 1.21869 1.00868 0.95888 1.01922 1.21799 1.02835 0.92360 1.00893 1.20726 0.79062 0.88253 0.82275 1.90664 1.39801 1.78131 1.33035 1.46325 1.57719 1.09943 1.23636 1.21705 0.98889 0.79113 0.96724 0.89334 1.22777 0.98494 0.96506 0.99347 1.22470 1.02793 0.95589 0.94071 1.22148 0.98274 0.95021 0.96116 0.90714 1.20696 0.92247 0.88251 0.95575 1.42352 1.12981 1.18515 1.63753 1.19243 0.97830 0.95126 1.24685 0.91254 1.24741 0.96104 0.98934 1.01378 1.69662 1.04059 1.35485 1.49137 0.86187 0.77256 0.83166 0.79586 1.21775 1.21792 1.20791 1.22432 1.00854 0.98036 0.94768 0.93039 0.90625 0.93459 0.90441 0.92438 0.92694 0.92694 0.89043 0.89007 0.76687 0.91591 0.91593 0.91229 0.90933 0.96263 0.96576 0.78281 0.93565 0.90604 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 8.93 37.16 0.33 -1.05 16 2 C -0.08 -0.67 2.57 -90.62 -0.23 -0.90 16 3 C -0.15 -0.92 9.19 37.16 0.34 -0.58 16 4 C -0.14 -1.05 5.17 -27.88 -0.14 -1.19 16 5 C 0.51 5.59 7.54 -10.99 -0.08 5.51 16 6 O -0.54 -7.91 13.62 5.56 0.08 -7.84 16 7 N -0.72 -7.26 5.03 -52.72 -0.27 -7.52 16 8 C 0.14 1.70 3.25 -66.81 -0.22 1.48 16 9 H 0.09 1.20 7.56 -51.93 -0.39 0.81 16 10 C -0.13 -1.75 6.53 -25.07 -0.16 -1.92 16 11 C -0.11 -1.72 6.19 -24.73 -0.15 -1.88 16 12 C -0.10 -1.51 2.89 -88.96 -0.26 -1.77 16 13 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.16 3.19 5.54 -4.04 -0.02 3.17 16 15 N -0.73 -18.61 5.49 -59.91 -0.33 -18.94 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 19 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 20 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 C -0.12 -1.50 6.14 -25.62 -0.16 -1.66 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.87 5.95 -51.93 -0.31 0.56 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 3.00 8.32 -40.82 -0.34 2.66 16 35 H 0.07 0.85 8.05 -51.93 -0.42 0.43 16 36 H 0.07 0.90 8.14 -51.94 -0.42 0.48 16 37 H 0.07 1.13 7.97 -51.93 -0.41 0.71 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 39 H 0.02 0.40 8.02 -51.93 -0.42 -0.02 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.38 10.21 7.63 -40.82 -0.31 9.90 16 42 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.08 0.93 7.84 -51.93 -0.41 0.53 16 44 H 0.07 0.72 7.62 -51.93 -0.40 0.32 16 LS Contribution 350.14 15.07 5.28 5.28 Total: -1.00 -32.21 350.14 -8.56 -40.77 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -8.01 Total: 6.63 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -1.00 Total: -8.20 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: 0.13 Total: -54.21 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.08 Total: -7.84 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.21 -8.56 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676903587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.507 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds