Wall clock time and date at job start Mon Mar 30 2020 00:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 O 1.21279 * 119.99679 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.46502 * 119.99979 * 179.97438 * 7 5 4 9 9 H 1.09006 * 110.01655 * 33.61298 * 8 7 5 10 10 C 1.54266 * 110.03609 * 272.17315 * 8 7 5 11 11 C 1.54890 * 104.19275 * 217.10282 * 10 8 7 12 12 C 1.54896 * 102.75034 * 37.94089 * 11 10 8 13 13 H 1.09000 * 110.48471 * 80.73511 * 12 11 10 14 14 C 1.52996 * 110.48485 * 203.37809 * 12 11 10 15 15 N 1.46503 * 109.47147 * 289.77287 * 14 12 11 16 16 C 1.36934 * 119.99855 * 180.02562 * 15 14 12 17 17 H 1.08002 * 120.00177 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99919 * 180.02562 * 16 15 14 19 19 N 1.31625 * 119.99864 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00165 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.46925 * 90.00007 * 20 18 16 22 22 H 1.48496 * 109.47273 * 209.99770 * 20 18 16 23 23 H 1.48494 * 109.47047 * 330.00186 * 20 18 16 24 24 C 1.53876 * 110.03450 * 154.99963 * 8 7 5 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 30 30 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 33 33 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 34 34 H 0.96996 * 120.00204 * 0.02562 * 7 5 4 35 35 H 1.09004 * 110.48302 * 335.77677 * 10 8 7 36 36 H 1.08989 * 110.48849 * 98.42410 * 10 8 7 37 37 H 1.08998 * 110.76028 * 279.62104 * 11 10 8 38 38 H 1.09001 * 110.91302 * 156.32230 * 11 10 8 39 39 H 1.08993 * 109.47314 * 49.77273 * 14 12 11 40 40 H 1.09001 * 109.46848 * 169.77648 * 14 12 11 41 41 H 0.96993 * 120.00190 * 0.02562 * 15 14 12 42 42 H 0.96998 * 119.99597 * 180.02562 * 19 18 16 43 43 H 1.09001 * 110.03564 * 238.57598 * 24 8 7 44 44 H 1.09000 * 110.02685 * 0.02562 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6414 -2.1733 -1.1891 6 8 1.0110 -2.5901 -0.2405 7 7 1.9845 -3.0083 -2.1897 8 6 1.5974 -4.4201 -2.1308 9 1 0.6333 -4.5222 -1.6325 10 6 2.6714 -5.2315 -1.3772 11 6 2.7285 -6.5814 -2.1346 12 6 2.5510 -6.1520 -3.6122 13 1 3.4959 -5.7949 -4.0218 14 6 2.0097 -7.3148 -4.4464 15 7 3.0479 -8.3385 -4.5888 16 6 2.7911 -9.4797 -5.3009 17 1 1.8231 -9.6252 -5.7571 18 6 3.7747 -10.4499 -5.4354 19 7 4.9544 -10.2727 -4.8790 20 14 3.4242 -12.0070 -6.4061 21 1 3.7879 -11.7948 -7.8301 22 1 4.2265 -13.1269 -5.8519 23 1 1.9797 -12.3368 -6.3080 24 6 1.5208 -5.0054 -3.5518 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6054 -0.2616 -2.1371 33 1 3.1263 -0.6443 -1.2952 34 1 2.4883 -2.6748 -2.9485 35 1 3.6357 -4.7257 -1.4259 36 1 2.3736 -5.3881 -0.3405 37 1 1.9140 -7.2348 -1.8217 38 1 3.6918 -7.0697 -1.9874 39 1 1.1408 -7.7454 -3.9488 40 1 1.7205 -6.9509 -5.4323 41 1 3.9172 -8.2080 -4.1789 42 1 5.6417 -10.9506 -4.9734 43 1 0.5199 -5.3922 -3.7429 44 1 1.7721 -4.2391 -4.2852 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001676903587.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:15 Heat of formation + Delta-G solvation = -80.848340 kcal Electronic energy + Delta-G solvation = -20409.897569 eV Core-core repulsion = 17360.095226 eV Total energy + Delta-G solvation = -3049.802343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.09531 -39.34613 -36.72347 -36.17760 -34.72571 -32.94392 -30.22430 -29.87103 -28.08605 -27.91684 -26.08204 -23.91946 -22.32028 -21.35188 -21.01229 -20.62650 -19.07739 -18.10058 -17.33953 -16.72635 -16.46035 -16.06586 -15.82315 -15.28566 -15.05966 -14.85491 -14.61434 -14.51423 -14.39709 -13.58176 -13.23833 -13.18376 -13.05150 -12.92070 -12.79242 -12.64645 -12.38620 -12.16108 -12.08116 -12.04018 -11.77141 -11.68171 -11.63382 -11.54590 -11.53140 -11.47925 -10.90789 -10.64664 -9.96500 -8.98009 -7.94880 -5.23077 1.47125 1.48906 1.57398 1.73938 2.30194 2.56465 3.38478 3.58594 3.60647 3.83760 3.88252 3.98470 4.07326 4.18721 4.38233 4.47682 4.51127 4.53755 4.61515 4.70864 4.73004 4.75936 4.77958 4.78043 4.87938 4.88644 5.05681 5.06904 5.09072 5.13831 5.17591 5.25514 5.33442 5.38286 5.47342 5.48696 5.54410 5.55489 5.69166 6.28068 6.66927 7.34144 7.38000 8.11729 8.34695 9.28833 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.063134 B = 0.002730 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.398063 B =10255.359364 C =10321.345379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 C -0.143 4.143 4 C -0.132 4.132 5 C 0.505 3.495 6 O -0.581 6.581 7 N -0.715 5.715 8 C 0.148 3.852 9 H 0.075 0.925 10 C -0.122 4.122 11 C -0.110 4.110 12 C -0.088 4.088 13 H 0.073 0.927 14 C 0.157 3.843 15 N -0.745 5.745 16 C -0.245 4.245 17 H 0.074 0.926 18 C -0.078 4.078 19 N -0.970 5.970 20 Si 0.974 3.026 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.270 1.270 24 C -0.109 4.109 25 H 0.052 0.948 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.052 0.948 39 H 0.017 0.983 40 H 0.022 0.978 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.078 0.922 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.999 24.270 6.272 25.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 C -0.200 4.200 4 C -0.171 4.171 5 C 0.294 3.706 6 O -0.461 6.461 7 N -0.367 5.367 8 C 0.043 3.957 9 H 0.093 0.907 10 C -0.161 4.161 11 C -0.148 4.148 12 C -0.107 4.107 13 H 0.092 0.908 14 C 0.031 3.969 15 N -0.387 5.387 16 C -0.377 4.377 17 H 0.092 0.908 18 C -0.270 4.270 19 N -0.621 5.621 20 Si 0.803 3.197 21 H -0.213 1.213 22 H -0.222 1.222 23 H -0.195 1.195 24 C -0.148 4.148 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.252 0.748 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.040 0.960 41 H 0.206 0.794 42 H 0.060 0.940 43 H 0.097 0.903 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.585 23.877 6.831 25.693 hybrid contribution 0.561 -1.250 -0.513 1.463 sum -6.024 22.627 6.318 24.252 Atomic orbital electron populations 1.21924 0.95570 1.01729 1.01664 1.20854 0.95987 0.96528 0.96817 1.21817 1.01398 0.94250 1.02512 1.21838 1.04287 0.89565 1.01424 1.21395 0.78117 0.89620 0.81497 1.90660 1.41696 1.79070 1.34718 1.46200 1.57535 1.08841 1.24139 1.21428 0.97760 0.80332 0.96183 0.90707 1.22669 0.99351 0.95354 0.98733 1.22389 1.01163 0.96572 0.94714 1.22024 0.99084 0.94589 0.94997 0.90817 1.20879 0.91024 0.88467 0.96519 1.42573 1.13729 1.19102 1.63324 1.19653 0.97874 0.96005 1.24145 0.90769 1.25579 0.96107 1.02261 1.03040 1.69819 1.04948 1.36429 1.50911 0.85132 0.77470 0.79079 0.78045 1.21253 1.22216 1.19537 1.22320 0.99762 0.97228 0.95456 0.92885 0.93480 0.92115 0.92678 0.92492 0.91797 0.91502 0.86598 0.86789 0.74813 0.90804 0.92352 0.92430 0.92959 0.96508 0.96032 0.79403 0.94022 0.90343 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.93 71.98 0.64 -1.95 16 2 C -0.08 -1.23 2.57 -10.79 -0.03 -1.26 16 3 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 4 C -0.13 -1.62 5.17 29.85 0.15 -1.47 16 5 C 0.51 10.27 7.54 87.66 0.66 10.93 16 6 O -0.58 -17.02 13.62 -3.03 -0.04 -17.06 16 7 N -0.71 -12.63 5.03 -439.10 -2.21 -14.84 16 8 C 0.15 3.38 3.25 45.72 0.15 3.53 16 9 H 0.07 1.98 7.56 -2.38 -0.02 1.96 16 10 C -0.12 -3.17 6.53 31.67 0.21 -2.96 16 11 C -0.11 -3.44 6.19 31.89 0.20 -3.25 16 12 C -0.09 -2.67 2.89 -9.72 -0.03 -2.70 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 14 C 0.16 6.21 5.54 86.38 0.48 6.69 16 15 N -0.74 -38.15 5.49 -343.46 -1.89 -40.03 16 16 C -0.24 -13.86 9.99 84.03 0.84 -13.02 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 18 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 19 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 20 Si 0.97 46.53 29.55 68.60 2.03 48.56 16 21 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 22 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C -0.11 -2.44 6.14 31.32 0.19 -2.25 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 1.09 5.95 -2.39 -0.01 1.07 16 27 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.05 1.06 7.96 -2.39 -0.02 1.04 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.41 4.78 8.32 -92.71 -0.77 4.01 16 35 H 0.07 1.80 8.05 -2.38 -0.02 1.78 16 36 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.91 7.97 -2.39 -0.02 1.89 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.02 0.68 8.02 -2.39 -0.02 0.66 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.37 20.32 7.63 -92.71 -0.71 19.61 16 42 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 43 H 0.08 1.76 7.84 -2.39 -0.02 1.75 16 44 H 0.09 1.64 7.62 -2.39 -0.02 1.62 16 Total: -1.00 -70.27 350.14 2.25 -68.01 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.51 Total: 27.52 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 4.59 Total: -12.51 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -3.81 Total: -114.52 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.04 Total: -17.06 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -70.27 2.25 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676903587.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.838 kcal (2) G-P(sol) polarization free energy of solvation -70.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds