Wall clock time and date at job start Mon Mar 30 2020 00:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46564 * 2 1 4 4 C 1.53000 * 109.46990 * 239.99929 * 2 1 3 5 5 C 1.50696 * 109.46939 * 119.99883 * 2 1 3 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 2 1 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 2 1 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 2 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.09000 * 109.47049 * 299.99494 * 1 2 3 24 24 H 1.09000 * 109.47293 * 60.00067 * 1 2 3 25 25 H 1.09005 * 109.46810 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46794 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47051 * 299.99522 * 3 2 1 28 28 H 1.08994 * 109.47407 * 60.00350 * 3 2 1 29 29 H 1.09000 * 109.46831 * 299.99896 * 4 2 1 30 30 H 1.09000 * 109.47099 * 59.99886 * 4 2 1 31 31 H 1.09001 * 109.47060 * 179.97438 * 4 2 1 32 32 H 0.96996 * 120.00286 * 359.97438 * 7 5 2 33 33 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 34 34 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 35 35 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 36 36 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 37 37 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 38 38 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 39 39 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 40 40 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 41 41 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 42 42 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 43 43 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 44 44 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2443 -1.1709 2.0291 7 7 3.3575 -0.8330 1.4440 8 6 3.8458 -1.5241 2.6398 9 6 5.3759 -1.5240 2.6399 10 6 5.8859 -2.2451 3.8892 11 7 7.3509 -2.2455 3.8888 12 6 8.0352 -3.2728 3.2959 13 1 8.9680 -3.0779 2.7878 14 6 7.5299 -4.5646 3.3480 15 7 6.6718 -4.8982 4.2886 16 14 8.0680 -5.8297 2.0833 17 1 9.5389 -6.0163 2.1644 18 1 7.3888 -7.1219 2.3557 19 1 7.7032 -5.3564 0.7237 20 6 8.0838 -1.1468 4.5229 21 6 9.6105 -1.1658 4.4234 22 6 8.9260 -1.4785 5.7564 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7209 -1.2495 32 1 3.9878 -0.4644 0.8055 33 1 3.4829 -2.5519 2.6392 34 1 3.4821 -1.0109 3.5300 35 1 5.7391 -0.4962 2.6403 36 1 5.7393 -2.0374 1.7497 37 1 5.5227 -3.2728 3.8891 38 1 5.5225 -1.7313 4.7791 39 1 6.2719 -5.7819 4.2890 40 1 7.5898 -0.1756 4.4972 41 1 10.0695 -1.9955 3.8859 42 1 10.1208 -0.2070 4.3326 43 1 8.9864 -0.7253 6.5420 44 1 8.9345 -2.5141 6.0964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690013000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:38 Heat of formation + Delta-G solvation = -13.654415 kcal Electronic energy + Delta-G solvation = -20945.511126 eV Core-core repulsion = 17898.622530 eV Total energy + Delta-G solvation = -3046.888596 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00390 -37.16250 -35.77527 -35.18793 -33.53855 -31.49700 -29.41212 -27.53884 -27.27516 -25.51831 -23.86285 -22.19102 -21.42745 -20.97009 -19.74704 -19.01219 -16.69406 -16.45610 -15.75342 -15.50434 -15.25538 -14.65500 -14.35160 -14.09863 -13.87529 -13.79566 -13.19376 -12.64180 -12.53199 -12.40199 -12.22316 -11.97988 -11.91107 -11.87782 -11.48378 -11.12381 -11.08898 -10.98951 -10.79950 -10.75490 -10.66654 -10.21122 -10.06368 -9.69368 -9.57256 -9.48340 -9.25970 -8.78814 -8.48025 -6.59513 -5.80552 -3.41709 2.80248 3.32880 3.38253 3.40909 3.41669 4.42424 4.54759 4.63383 4.72710 4.92050 5.10990 5.18034 5.31436 5.35687 5.42076 5.52859 5.63643 5.67031 5.70491 5.71774 5.79735 5.90222 5.92196 6.02932 6.03978 6.12209 6.15767 6.26771 6.40193 6.42960 6.48814 6.65292 6.69379 6.80884 7.02767 7.10736 7.21801 7.66261 7.71308 7.77765 8.40505 8.45214 9.12903 9.76173 10.31871 11.14982 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.004439 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.607701 B = 6306.906872 C = 7057.020238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 C -0.140 4.140 4 C -0.141 4.141 5 C 0.517 3.483 6 O -0.544 6.544 7 N -0.724 5.724 8 C 0.120 3.880 9 C -0.144 4.144 10 C 0.149 3.851 11 N -0.552 5.552 12 C -0.260 4.260 13 H 0.065 0.935 14 C 0.012 3.988 15 N -0.882 5.882 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.290 1.290 19 H -0.283 1.283 20 C 0.121 3.879 21 C -0.196 4.196 22 C -0.222 4.222 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.397 0.603 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.049 0.951 36 H 0.065 0.935 37 H 0.102 0.898 38 H 0.028 0.972 39 H 0.256 0.744 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 11.149 -8.869 15.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.092 4.092 3 C -0.197 4.197 4 C -0.198 4.198 5 C 0.302 3.698 6 O -0.422 6.422 7 N -0.375 5.375 8 C -0.003 4.003 9 C -0.185 4.185 10 C 0.022 3.978 11 N -0.268 5.268 12 C -0.389 4.389 13 H 0.083 0.917 14 C -0.189 4.189 15 N -0.524 5.524 16 Si 0.725 3.275 17 H -0.207 1.207 18 H -0.216 1.216 19 H -0.209 1.209 20 C 0.012 3.988 21 C -0.235 4.235 22 C -0.263 4.263 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.232 0.768 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.120 0.880 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.659 10.593 -8.202 15.432 hybrid contribution 0.711 -0.548 -0.866 1.247 sum -6.948 10.045 -9.068 15.212 Atomic orbital electron populations 1.21646 0.92162 1.02800 1.01779 1.20828 0.97954 0.96410 0.93992 1.21857 1.01322 0.93860 1.02684 1.21867 1.01400 1.00666 0.95897 1.20538 0.82473 0.79628 0.87154 1.90684 1.55446 1.48857 1.47185 1.46179 1.06780 1.58474 1.26036 1.21447 0.95553 0.96972 0.86354 1.22431 0.91376 1.00992 1.03659 1.20859 0.83215 1.02249 0.91457 1.43398 1.00588 1.21022 1.61780 1.19026 1.07267 0.85515 1.27099 0.91695 1.25120 1.00071 0.96667 0.97036 1.70032 1.32192 1.20298 1.29918 0.86485 0.78436 0.80744 0.81847 1.20685 1.21557 1.20917 1.21220 0.89108 0.92359 0.96159 1.23028 0.97055 1.01477 1.01919 1.23361 1.09759 1.01721 0.91476 0.92004 0.92253 0.91963 0.92053 0.91518 0.92075 0.91997 0.91518 0.91993 0.76840 0.91559 0.92048 0.93262 0.91604 0.88011 0.95389 0.93420 0.89653 0.88527 0.90836 0.91271 0.89046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 7.76 37.16 0.29 -1.02 16 2 C -0.09 -0.94 0.87 -155.66 -0.14 -1.08 16 3 C -0.14 -1.20 8.37 37.16 0.31 -0.89 16 4 C -0.14 -1.28 8.37 37.16 0.31 -0.97 16 5 C 0.52 7.61 6.48 -10.99 -0.07 7.53 16 6 O -0.54 -10.25 15.98 5.56 0.09 -10.16 16 7 N -0.72 -10.19 5.34 -60.29 -0.32 -10.51 16 8 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 9 C -0.14 -2.62 5.65 -26.73 -0.15 -2.77 16 10 C 0.15 3.32 5.34 -4.04 -0.02 3.30 16 11 N -0.55 -13.20 2.78 -165.67 -0.46 -13.66 16 12 C -0.26 -6.79 8.63 -15.06 -0.13 -6.92 16 13 H 0.07 1.70 6.55 -52.49 -0.34 1.36 16 14 C 0.01 0.31 4.96 -17.43 -0.09 0.22 16 15 N -0.88 -24.76 11.33 55.49 0.63 -24.13 16 16 Si 0.90 21.08 29.61 -169.99 -5.03 16.05 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C 0.12 2.54 6.56 -67.93 -0.45 2.09 16 21 C -0.20 -3.83 9.80 -26.69 -0.26 -4.09 16 22 C -0.22 -4.52 10.36 -26.70 -0.28 -4.80 16 23 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 26 H 0.06 0.49 7.56 -51.93 -0.39 0.09 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.53 7.57 -51.93 -0.39 0.14 16 32 H 0.40 4.63 7.31 -40.82 -0.30 4.34 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.10 2.60 5.35 -51.93 -0.28 2.32 16 38 H 0.03 0.60 8.07 -51.93 -0.42 0.18 16 39 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 40 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.10 2.06 6.37 -51.93 -0.33 1.73 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 354.33 15.07 5.34 5.34 Total: -1.00 -29.90 354.33 -8.38 -38.28 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.93 Total: 6.19 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.69 Total: -7.39 kcal Atomic # 7 Polarization: -48.15 SS G_CDS: -0.15 Total: -48.31 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.90 -8.38 -38.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690013000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.626 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds