Wall clock time and date at job start Mon Mar 30 2020 00:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46564 * 2 1 4 4 C 1.53000 * 109.46990 * 239.99929 * 2 1 3 5 5 C 1.50696 * 109.46939 * 119.99883 * 2 1 3 6 6 O 1.21283 * 120.00466 * 359.97438 * 5 2 1 7 7 N 1.34781 * 119.99531 * 180.02562 * 5 2 1 8 8 C 1.46494 * 119.99798 * 180.02562 * 7 5 2 9 9 C 1.53008 * 109.47206 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.47212 * 179.97438 * 9 8 7 11 11 N 1.46496 * 109.46867 * 179.97438 * 10 9 8 12 12 C 1.36935 * 120.00168 * 270.00096 * 11 10 9 13 13 H 1.07997 * 119.99803 * 144.92408 * 12 11 10 14 14 C 1.38812 * 120.00029 * 324.92336 * 12 11 10 15 15 N 1.31620 * 119.99923 * 337.94615 * 14 12 11 16 16 Si 1.86798 * 120.00018 * 157.95106 * 14 12 11 17 17 H 1.48498 * 109.47670 * 59.99599 * 16 14 12 18 18 H 1.48500 * 109.47161 * 180.02562 * 16 14 12 19 19 H 1.48508 * 109.46770 * 299.99456 * 16 14 12 20 20 C 1.46503 * 119.99704 * 90.00219 * 11 10 9 21 21 C 1.53004 * 117.49740 * 183.23422 * 20 11 10 22 22 C 1.52995 * 117.49870 * 114.57730 * 20 11 10 23 23 H 1.09000 * 109.47049 * 299.99494 * 1 2 3 24 24 H 1.09000 * 109.47293 * 60.00067 * 1 2 3 25 25 H 1.09005 * 109.46810 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46794 * 180.02562 * 3 2 1 27 27 H 1.08995 * 109.47051 * 299.99522 * 3 2 1 28 28 H 1.08994 * 109.47407 * 60.00350 * 3 2 1 29 29 H 1.09000 * 109.46831 * 299.99896 * 4 2 1 30 30 H 1.09000 * 109.47099 * 59.99886 * 4 2 1 31 31 H 1.09001 * 109.47060 * 179.97438 * 4 2 1 32 32 H 0.96996 * 120.00286 * 359.97438 * 7 5 2 33 33 H 1.09005 * 109.47552 * 59.99700 * 8 7 5 34 34 H 1.09000 * 109.47521 * 299.99839 * 8 7 5 35 35 H 1.09001 * 109.46702 * 60.00091 * 9 8 7 36 36 H 1.08994 * 109.46972 * 300.00074 * 9 8 7 37 37 H 1.08995 * 109.46805 * 60.00115 * 10 9 8 38 38 H 1.09000 * 109.47048 * 300.00092 * 10 9 8 39 39 H 0.96995 * 119.99672 * 175.76702 * 15 14 12 40 40 H 1.08999 * 115.55313 * 328.90767 * 20 11 10 41 41 H 1.09001 * 117.49599 * 0.02562 * 21 20 11 42 42 H 1.09000 * 117.49619 * 145.02077 * 21 20 11 43 43 H 1.09002 * 117.50220 * 214.97803 * 22 20 11 44 44 H 1.09001 * 117.50083 * 359.97438 * 22 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2443 -1.1709 2.0291 7 7 3.3575 -0.8330 1.4440 8 6 3.8458 -1.5241 2.6398 9 6 5.3759 -1.5240 2.6399 10 6 5.8859 -2.2451 3.8892 11 7 7.3509 -2.2455 3.8888 12 6 8.0352 -3.2728 3.2959 13 1 8.9680 -3.0779 2.7878 14 6 7.5299 -4.5646 3.3480 15 7 6.6718 -4.8982 4.2886 16 14 8.0680 -5.8297 2.0833 17 1 9.5389 -6.0163 2.1644 18 1 7.3888 -7.1219 2.3557 19 1 7.7032 -5.3564 0.7237 20 6 8.0838 -1.1468 4.5229 21 6 9.6105 -1.1658 4.4234 22 6 8.9260 -1.4785 5.7564 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 3.1299 1.4426 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8899 29 1 1.6767 -1.7489 -1.2492 30 1 1.6767 -0.2075 -2.1392 31 1 3.1301 -0.7209 -1.2495 32 1 3.9878 -0.4644 0.8055 33 1 3.4829 -2.5519 2.6392 34 1 3.4821 -1.0109 3.5300 35 1 5.7391 -0.4962 2.6403 36 1 5.7393 -2.0374 1.7497 37 1 5.5227 -3.2728 3.8891 38 1 5.5225 -1.7313 4.7791 39 1 6.2719 -5.7819 4.2890 40 1 7.5898 -0.1756 4.4972 41 1 10.0695 -1.9955 3.8859 42 1 10.1208 -0.2070 4.3326 43 1 8.9864 -0.7253 6.5420 44 1 8.9345 -2.5141 6.0964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690013000.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:37 Heat of formation + Delta-G solvation = -31.133492 kcal Electronic energy + Delta-G solvation = -20946.269076 eV Core-core repulsion = 17898.622530 eV Total energy + Delta-G solvation = -3047.646546 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15622 -38.87589 -36.86855 -36.48864 -35.24978 -33.25671 -31.09411 -28.21082 -28.11823 -27.22084 -25.48284 -23.46820 -22.99473 -22.48841 -21.49980 -20.18393 -18.27803 -17.69738 -17.34453 -16.96317 -16.61212 -16.38127 -15.81672 -15.31560 -15.17069 -14.76564 -14.38578 -14.34732 -13.91758 -13.65107 -13.29887 -13.22220 -13.04460 -12.88945 -12.73457 -12.62480 -12.61594 -12.47048 -12.29602 -12.04011 -11.90103 -11.86634 -11.79543 -11.44448 -11.29699 -10.91221 -10.67427 -10.45785 -10.09234 -8.53739 -7.79198 -5.44832 1.45013 1.47433 1.53616 1.64098 2.21080 2.49991 3.15201 3.41567 3.50230 3.63818 3.84618 3.93945 4.17033 4.20795 4.32327 4.35142 4.46649 4.55056 4.59853 4.71442 4.73085 4.75986 4.83051 4.92104 4.95005 4.95342 4.96863 5.01902 5.08029 5.11643 5.22596 5.34067 5.35560 5.36713 5.46170 5.48144 5.55205 5.68824 5.85489 6.45033 6.57422 7.15297 7.25718 7.86425 8.35802 9.11236 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018818 B = 0.004439 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.607701 B = 6306.906872 C = 7057.020238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.083 4.083 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.510 3.490 6 O -0.592 6.592 7 N -0.714 5.714 8 C 0.133 3.867 9 C -0.120 4.120 10 C 0.148 3.852 11 N -0.568 5.568 12 C -0.258 4.258 13 H 0.063 0.937 14 C -0.037 4.037 15 N -0.915 5.915 16 Si 0.951 3.049 17 H -0.276 1.276 18 H -0.297 1.297 19 H -0.276 1.276 20 C 0.102 3.898 21 C -0.179 4.179 22 C -0.223 4.223 23 H 0.047 0.953 24 H 0.090 0.910 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.046 0.954 30 H 0.094 0.906 31 H 0.068 0.932 32 H 0.412 0.588 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.028 0.972 39 H 0.249 0.751 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.379 13.632 -10.817 18.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.197 4.197 5 C 0.298 3.702 6 O -0.473 6.473 7 N -0.365 5.365 8 C 0.008 3.992 9 C -0.160 4.160 10 C 0.021 3.979 11 N -0.285 5.285 12 C -0.388 4.388 13 H 0.081 0.919 14 C -0.235 4.235 15 N -0.559 5.559 16 Si 0.779 3.221 17 H -0.202 1.202 18 H -0.224 1.224 19 H -0.202 1.202 20 C -0.006 4.006 21 C -0.217 4.217 22 C -0.264 4.264 23 H 0.067 0.933 24 H 0.109 0.891 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.111 0.889 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.087 0.913 32 H 0.249 0.751 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.132 0.868 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.962 13.113 -10.182 18.003 hybrid contribution 0.519 -1.272 -0.199 1.388 sum -6.443 11.841 -10.381 17.014 Atomic orbital electron populations 1.21672 0.92110 1.01941 1.02650 1.20882 0.97973 0.97471 0.92240 1.21878 1.01915 0.92034 1.03597 1.21896 1.01852 0.99962 0.95962 1.21435 0.81952 0.78884 0.87943 1.90662 1.56544 1.50899 1.49169 1.46020 1.07222 1.57906 1.25383 1.21101 0.94636 0.95902 0.87586 1.22066 0.91819 1.01276 1.00796 1.20757 0.82854 1.00823 0.93435 1.43601 1.01171 1.21373 1.62397 1.19224 1.07007 0.86141 1.26464 0.91913 1.25762 1.00710 0.98354 0.98625 1.70172 1.33857 1.20312 1.31593 0.85597 0.78016 0.78378 0.80061 1.20199 1.22352 1.20169 1.21561 0.90092 0.92499 0.96495 1.23033 0.95937 1.02473 1.00278 1.23279 1.10104 1.00377 0.92600 0.93341 0.89109 0.93743 0.91146 0.88892 0.92917 0.93449 0.88754 0.91309 0.75065 0.94141 0.92398 0.91084 0.92789 0.91504 0.95319 0.94128 0.86809 0.90770 0.86944 0.88112 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 7.76 71.98 0.56 -1.89 16 2 C -0.08 -1.60 0.87 -52.93 -0.05 -1.64 16 3 C -0.14 -1.91 8.37 71.98 0.60 -1.31 16 4 C -0.14 -2.16 8.37 71.98 0.60 -1.56 16 5 C 0.51 14.80 6.48 87.66 0.57 15.37 16 6 O -0.59 -22.86 15.98 -3.04 -0.05 -22.90 16 7 N -0.71 -19.44 5.34 -463.05 -2.47 -21.92 16 8 C 0.13 4.48 5.67 86.38 0.49 4.97 16 9 C -0.12 -4.26 5.65 30.60 0.17 -4.09 16 10 C 0.15 6.67 5.34 86.38 0.46 7.13 16 11 N -0.57 -27.13 2.78 -678.05 -1.88 -29.01 16 12 C -0.26 -13.59 8.63 84.03 0.73 -12.87 16 13 H 0.06 3.29 6.55 -2.91 -0.02 3.27 16 14 C -0.04 -2.03 4.96 84.86 0.42 -1.61 16 15 N -0.92 -53.18 11.33 21.65 0.25 -52.93 16 16 Si 0.95 43.97 29.61 68.60 2.03 46.01 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 19 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 20 C 0.10 4.09 6.56 44.99 0.30 4.39 16 21 C -0.18 -6.57 9.80 30.62 0.30 -6.27 16 22 C -0.22 -8.77 10.36 30.62 0.32 -8.45 16 23 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.04 1.01 8.10 -2.38 -0.02 0.99 16 26 H 0.07 0.86 7.56 -2.39 -0.02 0.85 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.97 7.57 -2.39 -0.02 0.96 16 32 H 0.41 8.73 7.31 -92.71 -0.68 8.05 16 33 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.07 3.56 5.35 -2.39 -0.01 3.55 16 38 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 39 H 0.25 14.19 8.32 -92.71 -0.77 13.42 16 40 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 41 H 0.07 3.07 6.37 -2.39 -0.02 3.06 16 42 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 43 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 44 H 0.05 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -67.13 354.33 3.62 -63.51 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.28 Total: 25.08 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: 5.47 Total: -7.83 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -4.11 Total: -103.86 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -0.05 Total: -22.90 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.01 kcal Total: -67.13 3.62 -63.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690013000.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.379 kcal (2) G-P(sol) polarization free energy of solvation -67.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds