Wall clock time and date at job start Mon Mar 30 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47433 * 2 1 4 4 C 1.52995 * 109.46738 * 64.99548 * 3 2 1 5 5 C 1.52998 * 109.47356 * 55.82399 * 4 3 2 6 6 C 1.52997 * 109.47606 * 184.99675 * 3 2 1 7 7 C 1.50697 * 109.47110 * 173.37061 * 6 3 2 8 8 O 1.21279 * 120.00265 * 353.77193 * 7 6 3 9 9 N 1.34773 * 119.99777 * 173.76494 * 7 6 3 10 10 C 1.46501 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.84867 * 23.80340 * 10 9 7 12 12 C 1.53792 * 113.61312 * 155.00053 * 10 9 7 13 13 C 1.53782 * 87.07954 * 139.98176 * 12 10 9 14 14 H 1.08994 * 113.61395 * 220.02119 * 13 12 10 15 15 N 1.46502 * 113.61662 * 89.19620 * 13 12 10 16 16 C 1.36937 * 120.00210 * 154.99733 * 15 13 12 17 17 H 1.08000 * 119.99614 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31623 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47244 * 59.99557 * 20 18 16 22 22 H 1.48496 * 109.47725 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.47125 * 300.00085 * 20 18 16 24 24 C 1.53779 * 113.61565 * 252.49420 * 10 9 7 25 25 H 1.09005 * 109.46588 * 60.00024 * 1 2 3 26 26 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46928 * 299.99945 * 1 2 3 28 28 H 1.09004 * 109.47548 * 239.99983 * 2 1 3 29 29 H 1.08997 * 109.47169 * 119.99801 * 2 1 3 30 30 H 1.09003 * 109.46618 * 305.00003 * 3 2 1 31 31 H 1.09007 * 109.47105 * 175.81951 * 4 3 2 32 32 H 1.08994 * 109.47640 * 295.81846 * 4 3 2 33 33 H 1.09007 * 109.47071 * 302.65176 * 5 4 3 34 34 H 1.08996 * 109.47149 * 62.64829 * 5 4 3 35 35 H 1.08996 * 109.47528 * 182.65227 * 5 4 3 36 36 H 1.09000 * 109.46951 * 293.37963 * 6 3 2 37 37 H 1.09007 * 109.46866 * 53.37296 * 6 3 2 38 38 H 0.97005 * 120.00008 * 0.02562 * 9 7 6 39 39 H 1.08999 * 113.61032 * 254.52745 * 12 10 9 40 40 H 1.08993 * 113.61456 * 25.43630 * 12 10 9 41 41 H 0.97002 * 119.99410 * 335.00533 * 15 13 12 42 42 H 0.97000 * 119.99441 * 180.02562 * 19 18 16 43 43 H 1.09004 * 113.61576 * 334.57578 * 24 10 9 44 44 H 1.09007 * 113.60853 * 105.46862 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.1576 1.3118 2.4923 6 6 3.5649 1.4444 -0.1256 7 6 4.0537 2.8604 -0.2893 8 8 3.2572 3.7659 -0.4174 9 7 5.3761 3.1206 -0.2931 10 6 5.8513 4.4973 -0.4517 11 1 5.1110 5.2380 -0.1496 12 6 7.2464 4.7404 0.1483 13 6 7.5388 5.6108 -1.0853 14 1 8.5474 5.4854 -1.4790 15 7 7.1660 7.0171 -0.9130 16 6 7.7921 7.9867 -1.6501 17 1 8.5603 7.7145 -2.3586 18 6 7.4392 9.3191 -1.4864 19 7 6.5025 9.6506 -0.6232 20 14 8.2927 10.6416 -2.4923 21 1 8.0685 10.3860 -3.9379 22 1 7.7382 11.9717 -2.1336 23 1 9.7497 10.6185 -2.2057 24 6 6.4802 4.7774 -1.8267 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9815 -0.8419 31 1 2.0614 3.1293 1.3398 32 1 0.5486 2.1916 1.3620 33 1 1.7688 0.2951 2.4338 34 1 3.2469 1.2863 2.4637 35 1 1.8292 1.7732 3.4235 36 1 4.0040 1.0098 0.7724 37 1 3.8585 0.8559 -0.9949 38 1 6.0132 2.3963 -0.1909 39 1 7.2280 5.3003 1.0833 40 1 7.8604 3.8416 0.2038 41 1 6.4758 7.2613 -0.2768 42 1 6.2557 10.5818 -0.5092 43 1 6.8848 3.8886 -2.3111 44 1 5.8433 5.3672 -2.4861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690294365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:06 Heat of formation + Delta-G solvation = -31.445996 kcal Electronic energy + Delta-G solvation = -20683.031469 eV Core-core repulsion = 17635.371372 eV Total energy + Delta-G solvation = -3047.660097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.02282 -38.39557 -36.86123 -33.97044 -32.62693 -31.35644 -30.23732 -29.44484 -25.52961 -25.08236 -24.09035 -23.63512 -22.54151 -20.41363 -19.16203 -18.57253 -17.35327 -16.78439 -16.05890 -15.88394 -15.46217 -14.84095 -14.31827 -14.08712 -13.94020 -13.62028 -13.12288 -12.98033 -12.74058 -12.63770 -12.26447 -12.16070 -11.99828 -11.82436 -11.72047 -11.51481 -11.22854 -10.85300 -10.78420 -10.58038 -10.52986 -10.47307 -10.23603 -10.15222 -9.85991 -9.69417 -9.39825 -8.89395 -8.62284 -6.99313 -5.77851 -3.07962 2.84909 3.42390 3.44377 3.48519 3.49940 4.57272 4.60846 4.65598 4.70483 4.99713 5.07946 5.14799 5.18374 5.26414 5.29091 5.38405 5.41551 5.42266 5.49409 5.53495 5.61251 5.69182 5.77108 5.89218 5.89706 5.97990 6.01945 6.04525 6.10991 6.17242 6.24007 6.31352 6.41451 6.46274 6.66255 6.75843 6.82590 7.07191 7.69424 7.76051 8.40419 8.47763 9.50951 10.07542 10.41576 11.44316 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035627 B = 0.003210 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.734204 B = 8720.981287 C = 8937.365759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.073 4.073 4 C -0.125 4.125 5 C -0.156 4.156 6 C -0.141 4.141 7 C 0.508 3.492 8 O -0.536 6.536 9 N -0.721 5.721 10 C 0.125 3.875 11 H 0.112 0.888 12 C -0.165 4.165 13 C 0.172 3.828 14 H 0.067 0.933 15 N -0.705 5.705 16 C -0.246 4.246 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.910 3.090 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.184 4.184 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.395 0.605 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.068 0.932 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.405 -22.094 3.570 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.091 4.091 4 C -0.162 4.162 5 C -0.214 4.214 6 C -0.181 4.181 7 C 0.294 3.706 8 O -0.413 6.413 9 N -0.371 5.371 10 C 0.021 3.979 11 H 0.130 0.870 12 C -0.205 4.205 13 C 0.058 3.942 14 H 0.085 0.915 15 N -0.344 5.344 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.740 3.260 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.227 4.227 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.228 0.772 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.886 -21.262 3.382 22.603 hybrid contribution 0.521 0.416 -0.321 0.740 sum -6.365 -20.846 3.060 22.010 Atomic orbital electron populations 1.21794 0.95825 1.01237 1.02163 1.21665 0.96148 0.96350 1.01884 1.20944 0.92924 0.95826 0.99450 1.21617 1.00903 1.00313 0.93388 1.21922 1.00987 1.00221 0.98224 1.21827 0.97896 0.94536 1.03800 1.20691 0.82581 0.91250 0.76098 1.90708 1.54447 1.47354 1.48770 1.46181 1.06830 1.10039 1.74061 1.22600 0.95143 0.82511 0.97607 0.86997 1.23894 0.95474 1.00437 1.00664 1.20907 0.95721 0.84900 0.92637 0.91473 1.42190 1.45250 0.99162 1.47790 1.19225 1.15486 0.86763 1.16215 0.90996 1.24786 0.99129 0.97274 0.99589 1.69662 1.32949 1.17259 1.37936 0.86235 0.78832 0.81206 0.79687 1.21193 1.21655 1.21187 1.24309 1.01174 1.00397 0.96794 0.92726 0.93069 0.92393 0.92222 0.91531 0.90197 0.90489 0.92042 0.92526 0.92925 0.93061 0.89120 0.89195 0.77204 0.90956 0.90405 0.77973 0.93312 0.91363 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.67 37.16 0.36 -0.80 16 2 C -0.12 -0.96 5.10 -26.73 -0.14 -1.09 16 3 C -0.07 -0.73 1.80 -90.62 -0.16 -0.90 16 4 C -0.12 -1.36 5.16 -26.73 -0.14 -1.50 16 5 C -0.16 -1.40 9.22 37.16 0.34 -1.05 16 6 C -0.14 -1.36 5.04 -27.89 -0.14 -1.50 16 7 C 0.51 7.13 7.40 -10.99 -0.08 7.05 16 8 O -0.54 -10.00 13.94 5.56 0.08 -9.92 16 9 N -0.72 -9.44 5.35 -53.02 -0.28 -9.73 16 10 C 0.13 2.10 4.12 -67.11 -0.28 1.82 16 11 H 0.11 2.28 7.46 -51.93 -0.39 1.90 16 12 C -0.16 -2.63 7.58 -25.91 -0.20 -2.83 16 13 C 0.17 3.39 4.56 -67.12 -0.31 3.08 16 14 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 15 N -0.71 -17.88 5.31 -52.64 -0.28 -18.16 16 16 C -0.25 -6.87 9.97 -15.06 -0.15 -7.02 16 17 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 18 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -28.49 13.06 55.49 0.72 -27.76 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.18 -3.29 7.68 -25.92 -0.20 -3.49 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.45 6.66 -51.93 -0.35 0.10 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.47 6.02 -51.93 -0.31 0.15 16 30 H 0.08 0.98 7.80 -51.93 -0.41 0.57 16 31 H 0.08 1.08 6.26 -51.92 -0.33 0.75 16 32 H 0.06 0.64 6.77 -51.93 -0.35 0.29 16 33 H 0.06 0.43 6.10 -51.92 -0.32 0.11 16 34 H 0.05 0.46 6.53 -51.93 -0.34 0.12 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.71 6.30 -51.93 -0.33 0.38 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.39 3.81 8.73 -40.82 -0.36 3.45 16 39 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 41 H 0.39 10.48 7.90 -40.82 -0.32 10.15 16 42 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.07 1.47 8.14 -51.92 -0.42 1.04 16 LS Contribution 345.36 15.07 5.20 5.20 Total: -1.00 -32.15 345.36 -8.32 -40.47 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -7.56 Total: 11.04 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -1.18 Total: -8.65 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: 0.16 Total: -55.65 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.08 Total: -9.92 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.15 -8.32 -40.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690294365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.024 kcal (2) G-P(sol) polarization free energy of solvation -32.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds