Wall clock time and date at job start Mon Mar 30 2020 00:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47433 * 2 1 4 4 C 1.52995 * 109.46738 * 64.99548 * 3 2 1 5 5 C 1.52998 * 109.47356 * 55.82399 * 4 3 2 6 6 C 1.52997 * 109.47606 * 184.99675 * 3 2 1 7 7 C 1.50697 * 109.47110 * 173.37061 * 6 3 2 8 8 O 1.21279 * 120.00265 * 353.77193 * 7 6 3 9 9 N 1.34773 * 119.99777 * 173.76494 * 7 6 3 10 10 C 1.46501 * 120.00005 * 180.02562 * 9 7 6 11 11 H 1.08994 * 112.84867 * 23.80340 * 10 9 7 12 12 C 1.53792 * 113.61312 * 155.00053 * 10 9 7 13 13 C 1.53782 * 87.07954 * 139.98176 * 12 10 9 14 14 H 1.08994 * 113.61395 * 220.02119 * 13 12 10 15 15 N 1.46502 * 113.61662 * 89.19620 * 13 12 10 16 16 C 1.36937 * 120.00210 * 154.99733 * 15 13 12 17 17 H 1.08000 * 119.99614 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00026 * 180.02562 * 16 15 13 19 19 N 1.31623 * 120.00036 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99947 * 180.02562 * 18 16 15 21 21 H 1.48508 * 109.47244 * 59.99557 * 20 18 16 22 22 H 1.48496 * 109.47725 * 179.97438 * 20 18 16 23 23 H 1.48511 * 109.47125 * 300.00085 * 20 18 16 24 24 C 1.53779 * 113.61565 * 252.49420 * 10 9 7 25 25 H 1.09005 * 109.46588 * 60.00024 * 1 2 3 26 26 H 1.08999 * 109.46905 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46928 * 299.99945 * 1 2 3 28 28 H 1.09004 * 109.47548 * 239.99983 * 2 1 3 29 29 H 1.08997 * 109.47169 * 119.99801 * 2 1 3 30 30 H 1.09003 * 109.46618 * 305.00003 * 3 2 1 31 31 H 1.09007 * 109.47105 * 175.81951 * 4 3 2 32 32 H 1.08994 * 109.47640 * 295.81846 * 4 3 2 33 33 H 1.09007 * 109.47071 * 302.65176 * 5 4 3 34 34 H 1.08996 * 109.47149 * 62.64829 * 5 4 3 35 35 H 1.08996 * 109.47528 * 182.65227 * 5 4 3 36 36 H 1.09000 * 109.46951 * 293.37963 * 6 3 2 37 37 H 1.09007 * 109.46866 * 53.37296 * 6 3 2 38 38 H 0.97005 * 120.00008 * 0.02562 * 9 7 6 39 39 H 1.08999 * 113.61032 * 254.52745 * 12 10 9 40 40 H 1.08993 * 113.61456 * 25.43630 * 12 10 9 41 41 H 0.97002 * 119.99410 * 335.00533 * 15 13 12 42 42 H 0.97000 * 119.99441 * 180.02562 * 19 18 16 43 43 H 1.09004 * 113.61576 * 334.57578 * 24 10 9 44 44 H 1.09007 * 113.60853 * 105.46862 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6352 2.1265 1.3073 5 6 2.1576 1.3118 2.4923 6 6 3.5649 1.4444 -0.1256 7 6 4.0537 2.8604 -0.2893 8 8 3.2572 3.7659 -0.4174 9 7 5.3761 3.1206 -0.2931 10 6 5.8513 4.4973 -0.4517 11 1 5.1110 5.2380 -0.1496 12 6 7.2464 4.7404 0.1483 13 6 7.5388 5.6108 -1.0853 14 1 8.5474 5.4854 -1.4790 15 7 7.1660 7.0171 -0.9130 16 6 7.7921 7.9867 -1.6501 17 1 8.5603 7.7145 -2.3586 18 6 7.4392 9.3191 -1.4864 19 7 6.5025 9.6506 -0.6232 20 14 8.2927 10.6416 -2.4923 21 1 8.0685 10.3860 -3.9379 22 1 7.7382 11.9717 -2.1336 23 1 9.7497 10.6185 -2.2057 24 6 6.4802 4.7774 -1.8267 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6054 1.9815 -0.8419 31 1 2.0614 3.1293 1.3398 32 1 0.5486 2.1916 1.3620 33 1 1.7688 0.2951 2.4338 34 1 3.2469 1.2863 2.4637 35 1 1.8292 1.7732 3.4235 36 1 4.0040 1.0098 0.7724 37 1 3.8585 0.8559 -0.9949 38 1 6.0132 2.3963 -0.1909 39 1 7.2280 5.3003 1.0833 40 1 7.8604 3.8416 0.2038 41 1 6.4758 7.2613 -0.2768 42 1 6.2557 10.5818 -0.5092 43 1 6.8848 3.8886 -2.3111 44 1 5.8433 5.3672 -2.4861 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690294365.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:35:06 Heat of formation + Delta-G solvation = -53.097400 kcal Electronic energy + Delta-G solvation = -20683.970344 eV Core-core repulsion = 17635.371372 eV Total energy + Delta-G solvation = -3048.598972 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.21214 -39.70737 -37.83402 -35.70050 -34.23281 -32.07013 -31.78685 -30.68678 -26.68406 -26.50570 -25.73389 -24.50678 -23.94344 -21.55628 -20.33172 -19.71223 -19.35645 -17.89242 -17.30932 -16.87847 -16.66569 -16.29920 -15.78690 -15.42303 -15.14607 -14.90171 -14.50096 -14.26358 -13.71256 -13.63875 -13.48712 -13.33308 -13.28806 -12.84060 -12.81139 -12.73806 -12.61633 -12.29440 -12.23209 -11.92547 -11.80763 -11.71879 -11.39971 -11.33818 -11.27692 -11.18487 -10.89797 -10.59121 -9.90271 -9.04488 -7.96933 -5.27056 1.45891 1.49860 1.55884 1.74388 2.33470 2.54412 3.34817 3.65185 3.78799 3.82454 3.87424 3.90057 3.98335 4.21532 4.30285 4.35239 4.43919 4.46711 4.59451 4.65473 4.69531 4.76682 4.82107 4.86872 4.96525 4.99551 5.01589 5.11989 5.16213 5.19078 5.25307 5.31354 5.34382 5.36037 5.42388 5.48987 5.52363 5.70393 5.73575 6.25414 6.71160 7.29618 7.42663 8.06138 8.27458 9.26542 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.035627 B = 0.003210 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.734204 B = 8720.981287 C = 8937.365759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.072 4.072 4 C -0.125 4.125 5 C -0.151 4.151 6 C -0.130 4.130 7 C 0.500 3.500 8 O -0.591 6.591 9 N -0.705 5.705 10 C 0.131 3.869 11 H 0.064 0.936 12 C -0.138 4.138 13 C 0.150 3.850 14 H 0.078 0.922 15 N -0.724 5.724 16 C -0.245 4.245 17 H 0.082 0.918 18 C -0.080 4.080 19 N -0.973 5.973 20 Si 0.978 3.022 21 H -0.278 1.278 22 H -0.298 1.298 23 H -0.272 1.272 24 C -0.171 4.171 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.047 0.953 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.418 0.582 39 H 0.058 0.942 40 H 0.127 0.873 41 H 0.371 0.629 42 H 0.251 0.749 43 H 0.106 0.894 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -25.574 3.403 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.152 4.152 3 C -0.092 4.092 4 C -0.162 4.162 5 C -0.208 4.208 6 C -0.169 4.169 7 C 0.289 3.711 8 O -0.471 6.471 9 N -0.357 5.357 10 C 0.026 3.974 11 H 0.083 0.917 12 C -0.177 4.177 13 C 0.039 3.961 14 H 0.096 0.904 15 N -0.362 5.362 16 C -0.377 4.377 17 H 0.100 0.900 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.806 3.194 21 H -0.205 1.205 22 H -0.224 1.224 23 H -0.198 1.198 24 C -0.213 4.213 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.145 0.855 41 H 0.202 0.798 42 H 0.060 0.940 43 H 0.125 0.875 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.209 -24.839 3.202 25.580 hybrid contribution -0.018 1.420 -0.286 1.448 sum -5.227 -23.419 2.917 24.172 Atomic orbital electron populations 1.21815 0.96019 1.01964 1.01465 1.21625 0.95963 0.94358 1.03302 1.20920 0.93444 0.97153 0.97635 1.21566 1.00637 0.98823 0.95223 1.21892 1.01302 1.00785 0.96842 1.21870 0.97268 0.91383 1.06369 1.21598 0.82210 0.92692 0.74638 1.90704 1.55868 1.49483 1.51091 1.45944 1.07262 1.09031 1.73453 1.22104 0.94632 0.83692 0.97009 0.91727 1.23733 0.94947 1.00993 0.98048 1.21259 0.96477 0.82850 0.95518 0.90392 1.42403 1.44971 1.01391 1.47413 1.19691 1.14830 0.87536 1.15620 0.89969 1.25670 1.00430 0.99739 1.01340 1.69843 1.35148 1.17100 1.40242 0.85147 0.78158 0.77844 0.78220 1.20453 1.22394 1.19793 1.24178 0.99770 1.00783 0.96582 0.93784 0.91549 0.92891 0.90922 0.89835 0.93234 0.94451 0.92335 0.90451 0.92327 0.93383 0.86205 0.86339 0.74452 0.92305 0.85512 0.79768 0.94030 0.87538 0.95057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.67 71.98 0.70 -1.40 16 2 C -0.12 -1.46 5.10 30.60 0.16 -1.30 16 3 C -0.07 -1.39 1.80 -10.80 -0.02 -1.41 16 4 C -0.12 -2.73 5.16 30.59 0.16 -2.57 16 5 C -0.15 -2.40 9.22 71.98 0.66 -1.74 16 6 C -0.13 -2.14 5.04 29.85 0.15 -1.99 16 7 C 0.50 13.70 7.40 87.66 0.65 14.35 16 8 O -0.59 -23.19 13.94 -3.02 -0.04 -23.23 16 9 N -0.71 -17.03 5.35 -440.04 -2.36 -19.39 16 10 C 0.13 4.36 4.12 45.52 0.19 4.55 16 11 H 0.06 2.81 7.46 -2.39 -0.02 2.80 16 12 C -0.14 -4.13 7.58 31.12 0.24 -3.89 16 13 C 0.15 5.79 4.56 45.52 0.21 5.99 16 14 H 0.08 2.84 8.10 -2.39 -0.02 2.82 16 15 N -0.72 -37.66 5.31 -320.45 -1.70 -39.36 16 16 C -0.25 -13.87 9.97 84.03 0.84 -13.04 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 19 N -0.97 -61.83 13.06 21.65 0.28 -61.55 16 20 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 C -0.17 -5.98 7.68 31.12 0.24 -5.74 16 25 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.05 0.76 6.66 -2.39 -0.02 0.74 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.81 6.02 -2.39 -0.01 0.80 16 30 H 0.05 1.25 7.80 -2.39 -0.02 1.23 16 31 H 0.04 1.11 6.26 -2.38 -0.01 1.09 16 32 H 0.06 1.26 6.77 -2.39 -0.02 1.24 16 33 H 0.08 0.92 6.10 -2.38 -0.01 0.90 16 34 H 0.06 0.86 6.53 -2.39 -0.02 0.84 16 35 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.12 1.34 6.30 -2.39 -0.02 1.33 16 37 H 0.12 1.37 8.14 -2.38 -0.02 1.35 16 38 H 0.42 6.25 8.73 -92.70 -0.81 5.44 16 39 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.13 2.60 8.12 -2.39 -0.02 2.58 16 41 H 0.37 21.17 7.90 -92.71 -0.73 20.44 16 42 H 0.25 15.49 8.31 -92.71 -0.77 14.72 16 43 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -75.22 345.36 2.29 -72.93 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.55 Total: 33.97 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 4.63 Total: -12.44 kcal Atomic # 7 Polarization: -116.52 SS G_CDS: -3.78 Total: -120.30 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.04 Total: -23.23 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -75.22 2.29 -72.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690294365.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.835 kcal (2) G-P(sol) polarization free energy of solvation -75.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds