Wall clock time and date at job start Mon Mar 30 2020 00:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53006 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47229 * 305.00281 * 4 3 2 6 6 C 1.52999 * 109.46892 * 65.00178 * 4 3 2 7 7 C 1.50701 * 109.47291 * 185.00179 * 4 3 2 8 8 O 1.21289 * 119.99659 * 0.02562 * 7 4 3 9 9 N 1.34772 * 120.00022 * 180.02562 * 7 4 3 10 10 C 1.46494 * 119.99954 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47464 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.88352 * 308.88353 * 11 10 9 13 13 C 1.55153 * 111.00844 * 185.00091 * 11 10 9 14 14 C 1.54323 * 103.10236 * 206.29737 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36936 * 125.59370 * 181.08954 * 15 14 13 17 17 H 1.08000 * 119.99616 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00068 * 359.92625 * 16 15 14 19 19 N 1.31617 * 119.99946 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47258 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47229 * 119.99810 * 20 18 16 23 23 H 1.48494 * 109.47269 * 239.99965 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.08990 * 109.46968 * 299.99944 * 1 2 3 26 26 H 1.09001 * 109.46768 * 60.00057 * 1 2 3 27 27 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 240.00401 * 2 1 3 29 29 H 1.09001 * 109.46768 * 119.99943 * 2 1 3 30 30 H 1.09000 * 109.47266 * 60.00330 * 3 2 1 31 31 H 1.08997 * 109.47632 * 299.99976 * 3 2 1 32 32 H 1.09003 * 109.47136 * 300.00274 * 6 4 3 33 33 H 1.09002 * 109.46881 * 59.99967 * 6 4 3 34 34 H 1.08993 * 109.47428 * 179.97438 * 6 4 3 35 35 H 0.97002 * 120.00061 * 0.02562 * 9 7 4 36 36 H 1.09004 * 109.47248 * 59.99837 * 10 9 7 37 37 H 1.09004 * 109.47668 * 300.00070 * 10 9 7 38 38 H 1.09002 * 110.72030 * 324.75004 * 13 11 10 39 39 H 1.09003 * 110.72184 * 87.84655 * 13 11 10 40 40 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 41 41 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 42 42 H 0.97002 * 119.99700 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 44 44 H 1.08998 * 110.36847 * 94.73011 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8532 0.8426 6 6 4.0806 0.8328 -1.3064 7 6 4.0724 2.8580 0.1245 8 8 3.2841 3.7763 0.2049 9 7 5.3974 3.1033 0.1460 10 6 5.8856 4.4793 0.2658 11 6 7.4156 4.4795 0.2653 12 1 7.8045 3.7738 0.9994 13 6 7.9717 5.9061 0.5163 14 6 9.3549 5.8676 -0.1671 15 7 9.3132 4.7835 -1.1663 16 6 10.3507 4.4057 -1.9761 17 1 10.2202 3.5958 -2.6785 18 6 11.5699 5.0645 -1.8950 19 7 11.7288 6.0519 -1.0394 20 14 12.9850 4.5496 -3.0003 21 1 12.5527 3.4227 -3.8655 22 1 13.3932 5.6976 -3.8492 23 1 14.1344 4.1186 -2.1646 24 6 7.9713 4.1733 -1.1480 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.7173 -0.1910 -1.3960 33 1 3.7175 1.4221 -2.1484 34 1 5.1705 0.8332 -1.3063 35 1 6.0278 2.3689 0.0813 36 1 5.5222 4.9140 1.1970 37 1 5.5224 5.0685 -0.5762 38 1 7.3325 6.6565 0.0512 39 1 8.0746 6.0975 1.5845 40 1 9.5525 6.8205 -0.6581 41 1 10.1284 5.6621 0.5729 42 1 12.5806 6.5124 -0.9830 43 1 8.0420 3.0967 -1.3026 44 1 7.3381 4.6263 -1.9108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691131417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:44 Heat of formation + Delta-G solvation = -43.997257 kcal Electronic energy + Delta-G solvation = -20647.873633 eV Core-core repulsion = 17599.669273 eV Total energy + Delta-G solvation = -3048.204360 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.94958 -37.71724 -36.12176 -34.62076 -32.69776 -31.98943 -29.73646 -28.27123 -26.81917 -25.67126 -24.29060 -23.03148 -21.19704 -20.27737 -19.98415 -19.35563 -17.11898 -16.67031 -16.09739 -15.80513 -15.08624 -14.85364 -14.57641 -14.16486 -13.87139 -13.54879 -13.49396 -12.97910 -12.62773 -12.45144 -12.34659 -12.08738 -11.98846 -11.76259 -11.46026 -11.36271 -11.16650 -11.02134 -10.90101 -10.81754 -10.73059 -10.37921 -10.13493 -9.98549 -9.87868 -9.66766 -9.55224 -8.91586 -8.61638 -6.84119 -5.72141 -3.05586 2.71149 3.27313 3.38798 3.44120 3.46739 4.48380 4.53310 4.57429 4.69618 4.94724 5.01659 5.08341 5.12059 5.23440 5.32889 5.43061 5.44955 5.54885 5.56267 5.62715 5.66291 5.68506 5.75965 5.88433 5.90839 5.92510 6.06332 6.07180 6.11929 6.18851 6.35062 6.47672 6.50305 6.53934 6.69696 6.91408 7.55414 7.59875 7.62476 7.81969 8.24492 8.30257 9.20720 9.81552 10.47832 11.39813 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.003291 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.246242 B = 8506.869515 C = 9188.386380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.112 4.112 5 H 0.095 0.905 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.547 6.547 9 N -0.725 5.725 10 C 0.132 3.868 11 C -0.117 4.117 12 H 0.079 0.921 13 C -0.135 4.135 14 C 0.178 3.822 15 N -0.608 5.608 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.010 4.010 19 N -0.922 5.922 20 Si 0.912 3.088 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.143 3.857 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.047 0.953 42 H 0.252 0.748 43 H 0.035 0.965 44 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.017 -10.879 3.725 20.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.204 4.204 7 C 0.299 3.701 8 O -0.424 6.424 9 N -0.376 5.376 10 C 0.008 3.992 11 C -0.137 4.137 12 H 0.097 0.903 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.334 5.334 16 C -0.356 4.356 17 H 0.095 0.905 18 C -0.206 4.206 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.017 3.983 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.053 0.947 44 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -17.344 -10.133 3.734 20.431 hybrid contribution 1.229 -0.506 -0.566 1.445 sum -16.114 -10.639 3.168 19.568 Atomic orbital electron populations 1.21762 0.95845 1.01401 1.01977 1.21608 0.95955 0.96760 1.02056 1.21424 0.92366 0.96503 1.03516 1.21344 0.97780 0.93630 1.00551 0.88671 1.21839 1.01441 1.01247 0.95881 1.20662 0.82286 0.91266 0.75840 1.90684 1.55409 1.46542 1.49791 1.46116 1.06960 1.10064 1.74419 1.21389 0.93808 0.82278 1.01723 1.22609 0.92043 0.99278 0.99766 0.90293 1.22857 0.99746 0.94532 1.00306 1.21228 0.90404 0.92092 0.90977 1.44610 1.07657 1.37666 1.43469 1.19102 0.89386 1.13782 1.13331 0.90456 1.24810 0.97877 0.98374 0.99522 1.69975 1.24109 1.24656 1.38229 0.86044 0.82388 0.77632 0.79698 1.20527 1.21753 1.21771 1.21565 0.87829 0.96179 0.92728 0.92729 0.92699 0.92882 0.91704 0.92070 0.91196 0.91304 0.91296 0.91995 0.91911 0.76459 0.91789 0.91450 0.92235 0.92028 0.93838 0.93525 0.93805 0.94679 0.96358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.13 -0.92 5.69 -26.73 -0.15 -1.07 16 3 C -0.10 -0.95 4.03 -26.73 -0.11 -1.06 16 4 C -0.11 -1.06 2.73 -91.77 -0.25 -1.31 16 5 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.22 8.84 37.16 0.33 -0.89 16 7 C 0.51 6.79 7.15 -10.99 -0.08 6.71 16 8 O -0.55 -9.33 15.92 5.55 0.09 -9.24 16 9 N -0.72 -9.17 5.39 -60.29 -0.33 -9.50 16 10 C 0.13 1.92 5.13 -4.04 -0.02 1.90 16 11 C -0.12 -1.94 3.05 -88.47 -0.27 -2.21 16 12 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 13 C -0.14 -2.48 6.41 -24.90 -0.16 -2.64 16 14 C 0.18 4.29 5.39 -2.81 -0.02 4.28 16 15 N -0.61 -15.43 3.41 -169.69 -0.58 -16.00 16 16 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 18 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 19 N -0.92 -27.15 10.31 55.49 0.57 -26.57 16 20 Si 0.91 22.06 29.55 -169.99 -5.02 17.04 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 C 0.14 2.87 6.65 -2.52 -0.02 2.85 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 6.57 -51.93 -0.34 0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.75 7.95 -51.93 -0.41 0.33 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.46 6.57 -51.93 -0.34 0.12 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.50 7.56 -51.93 -0.39 0.11 16 35 H 0.40 4.32 7.89 -40.82 -0.32 4.00 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 38 H 0.06 1.04 8.04 -51.93 -0.42 0.62 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 1.17 7.51 -51.93 -0.39 0.78 16 41 H 0.05 1.24 7.39 -51.93 -0.38 0.86 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -32.01 347.71 -8.67 -40.68 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -8.02 Total: -0.67 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -0.62 Total: -0.99 kcal Atomic # 7 Polarization: -51.74 SS G_CDS: -0.33 Total: -52.07 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.01 -8.67 -40.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691131417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.313 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds