Wall clock time and date at job start Mon Mar 30 2020 00:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46975 * 2 1 4 4 C 1.53006 * 109.47148 * 179.97438 * 3 2 1 5 5 H 1.08993 * 109.47229 * 305.00281 * 4 3 2 6 6 C 1.52999 * 109.46892 * 65.00178 * 4 3 2 7 7 C 1.50701 * 109.47291 * 185.00179 * 4 3 2 8 8 O 1.21289 * 119.99659 * 0.02562 * 7 4 3 9 9 N 1.34772 * 120.00022 * 180.02562 * 7 4 3 10 10 C 1.46494 * 119.99954 * 179.97438 * 9 7 4 11 11 C 1.53000 * 109.47464 * 180.02562 * 10 9 7 12 12 H 1.09003 * 110.88352 * 308.88353 * 11 10 9 13 13 C 1.55153 * 111.00844 * 185.00091 * 11 10 9 14 14 C 1.54323 * 103.10236 * 206.29737 * 13 11 10 15 15 N 1.47486 * 107.03754 * 22.24109 * 14 13 11 16 16 C 1.36936 * 125.59370 * 181.08954 * 15 14 13 17 17 H 1.08000 * 119.99616 * 179.97438 * 16 15 14 18 18 C 1.38811 * 120.00068 * 359.92625 * 16 15 14 19 19 N 1.31617 * 119.99946 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99992 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47258 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47229 * 119.99810 * 20 18 16 23 23 H 1.48494 * 109.47269 * 239.99965 * 20 18 16 24 24 C 1.47428 * 108.75727 * 1.02624 * 15 14 13 25 25 H 1.08990 * 109.46968 * 299.99944 * 1 2 3 26 26 H 1.09001 * 109.46768 * 60.00057 * 1 2 3 27 27 H 1.08998 * 109.46870 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47274 * 240.00401 * 2 1 3 29 29 H 1.09001 * 109.46768 * 119.99943 * 2 1 3 30 30 H 1.09000 * 109.47266 * 60.00330 * 3 2 1 31 31 H 1.08997 * 109.47632 * 299.99976 * 3 2 1 32 32 H 1.09003 * 109.47136 * 300.00274 * 6 4 3 33 33 H 1.09002 * 109.46881 * 59.99967 * 6 4 3 34 34 H 1.08993 * 109.47428 * 179.97438 * 6 4 3 35 35 H 0.97002 * 120.00061 * 0.02562 * 9 7 4 36 36 H 1.09004 * 109.47248 * 59.99837 * 10 9 7 37 37 H 1.09004 * 109.47668 * 300.00070 * 10 9 7 38 38 H 1.09002 * 110.72030 * 324.75004 * 13 11 10 39 39 H 1.09003 * 110.72184 * 87.84655 * 13 11 10 40 40 H 1.09000 * 109.88693 * 141.69901 * 14 13 11 41 41 H 1.09005 * 109.88012 * 262.86516 * 14 13 11 42 42 H 0.97002 * 119.99700 * 180.02562 * 19 18 16 43 43 H 1.09000 * 110.36462 * 217.05803 * 24 15 14 44 44 H 1.08998 * 110.36847 * 94.73011 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 1 3.9331 0.8532 0.8426 6 6 4.0806 0.8328 -1.3064 7 6 4.0724 2.8580 0.1245 8 8 3.2841 3.7763 0.2049 9 7 5.3974 3.1033 0.1460 10 6 5.8856 4.4793 0.2658 11 6 7.4156 4.4795 0.2653 12 1 7.8045 3.7738 0.9994 13 6 7.9717 5.9061 0.5163 14 6 9.3549 5.8676 -0.1671 15 7 9.3132 4.7835 -1.1663 16 6 10.3507 4.4057 -1.9761 17 1 10.2202 3.5958 -2.6785 18 6 11.5699 5.0645 -1.8950 19 7 11.7288 6.0519 -1.0394 20 14 12.9850 4.5496 -3.0003 21 1 12.5527 3.4227 -3.8655 22 1 13.3932 5.6976 -3.8492 23 1 14.1344 4.1186 -2.1646 24 6 7.9713 4.1733 -1.1480 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 3.7173 -0.1910 -1.3960 33 1 3.7175 1.4221 -2.1484 34 1 5.1705 0.8332 -1.3063 35 1 6.0278 2.3689 0.0813 36 1 5.5222 4.9140 1.1970 37 1 5.5224 5.0685 -0.5762 38 1 7.3325 6.6565 0.0512 39 1 8.0746 6.0975 1.5845 40 1 9.5525 6.8205 -0.6581 41 1 10.1284 5.6621 0.5729 42 1 12.5806 6.5124 -0.9830 43 1 8.0420 3.0967 -1.3026 44 1 7.3381 4.6263 -1.9108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691131417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:43 Heat of formation + Delta-G solvation = -63.961216 kcal Electronic energy + Delta-G solvation = -20648.739336 eV Core-core repulsion = 17599.669273 eV Total energy + Delta-G solvation = -3049.070063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.01397 -39.29933 -36.93471 -35.99631 -34.34867 -32.89439 -31.49337 -29.86424 -27.51809 -27.30828 -25.69573 -24.15674 -22.18972 -21.73764 -21.43401 -20.49906 -18.86080 -17.92224 -17.30384 -16.70314 -16.66840 -16.23776 -15.81150 -15.56601 -14.86677 -14.77351 -14.66220 -14.07889 -13.91563 -13.79152 -13.49392 -13.34784 -13.12023 -13.02546 -12.76757 -12.70861 -12.66055 -12.11701 -11.97847 -11.90778 -11.85298 -11.81892 -11.68049 -11.53911 -11.46879 -11.36841 -10.72371 -10.66308 -10.04486 -8.90140 -7.85104 -5.20589 1.46190 1.47145 1.57436 1.68501 2.25204 2.49590 3.33503 3.60562 3.68984 3.81224 3.88336 4.00133 4.02284 4.05234 4.33846 4.40216 4.43492 4.45307 4.61443 4.64926 4.73263 4.81369 4.83944 4.91982 4.93904 4.98433 5.05234 5.07071 5.07393 5.15925 5.26322 5.33418 5.36696 5.45927 5.47082 5.50520 5.55516 5.67074 5.77798 6.19555 6.59811 7.09817 7.28746 7.77555 8.42514 9.25851 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.034045 B = 0.003291 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.246242 B = 8506.869515 C = 9188.386380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.121 4.121 3 C -0.098 4.098 4 C -0.104 4.104 5 H 0.120 0.880 6 C -0.144 4.144 7 C 0.510 3.490 8 O -0.589 6.589 9 N -0.717 5.717 10 C 0.143 3.857 11 C -0.094 4.094 12 H 0.091 0.909 13 C -0.124 4.124 14 C 0.183 3.817 15 N -0.630 5.630 16 C -0.240 4.240 17 H 0.084 0.916 18 C -0.070 4.070 19 N -0.953 5.953 20 Si 0.979 3.021 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.292 1.292 24 C 0.139 3.861 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.071 0.929 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.004 0.996 41 H 0.014 0.986 42 H 0.246 0.754 43 H 0.050 0.950 44 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.863 -13.228 3.818 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.125 4.125 5 H 0.138 0.862 6 C -0.202 4.202 7 C 0.298 3.702 8 O -0.470 6.470 9 N -0.369 5.369 10 C 0.019 3.981 11 C -0.114 4.114 12 H 0.109 0.891 13 C -0.163 4.163 14 C 0.058 3.942 15 N -0.357 5.357 16 C -0.369 4.369 17 H 0.102 0.898 18 C -0.263 4.263 19 N -0.603 5.603 20 Si 0.807 3.193 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.219 1.219 24 C 0.014 3.986 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.249 0.751 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.022 0.978 41 H 0.032 0.968 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -18.209 -12.527 3.820 22.430 hybrid contribution 1.449 0.235 -0.614 1.591 sum -16.760 -12.292 3.206 21.030 Atomic orbital electron populations 1.21783 0.95800 1.02058 1.01569 1.21583 0.96007 0.95135 1.03093 1.21391 0.92508 0.97787 1.01914 1.21383 0.97566 0.91316 1.02248 0.86198 1.21852 1.01777 1.02087 0.94442 1.21358 0.81845 0.92443 0.74551 1.90670 1.56401 1.48190 1.51714 1.46028 1.07263 1.09602 1.74007 1.21119 0.91989 0.83412 1.01579 1.22408 0.93195 0.98105 0.97662 0.89086 1.22724 0.96268 0.96155 1.01142 1.20993 0.93028 0.90097 0.90061 1.44944 1.09132 1.38312 1.43280 1.19519 0.90258 1.13597 1.13495 0.89794 1.25679 1.00561 0.98765 1.01266 1.70200 1.24257 1.25888 1.39919 0.84999 0.78975 0.77407 0.77896 1.18770 1.22202 1.21858 1.21743 0.85449 0.96610 0.94763 0.93165 0.93185 0.91662 0.90636 0.90932 0.92829 0.93003 0.89116 0.93330 0.91340 0.75063 0.91100 0.92730 0.91298 0.89638 0.97795 0.96777 0.94472 0.93168 0.96629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.18 16 2 C -0.12 -1.47 5.69 30.60 0.17 -1.30 16 3 C -0.10 -1.73 4.03 30.59 0.12 -1.60 16 4 C -0.10 -1.73 2.73 -11.54 -0.03 -1.76 16 5 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 6 C -0.14 -1.99 8.84 71.98 0.64 -1.35 16 7 C 0.51 12.64 7.15 87.66 0.63 13.27 16 8 O -0.59 -19.75 15.92 -3.06 -0.05 -19.80 16 9 N -0.72 -16.47 5.39 -463.06 -2.50 -18.96 16 10 C 0.14 3.89 5.13 86.38 0.44 4.33 16 11 C -0.09 -2.92 3.05 -9.40 -0.03 -2.95 16 12 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 13 C -0.12 -4.41 6.41 31.78 0.20 -4.21 16 14 C 0.18 9.05 5.39 86.64 0.47 9.52 16 15 N -0.63 -32.11 3.41 -690.79 -2.35 -34.46 16 16 C -0.24 -13.36 10.28 84.03 0.86 -12.50 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -4.00 5.49 84.86 0.47 -3.53 16 19 N -0.95 -57.82 10.31 21.65 0.22 -57.60 16 20 Si 0.98 45.70 29.55 68.60 2.03 47.73 16 21 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 22 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 24 C 0.14 5.39 6.65 86.86 0.58 5.97 16 25 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.77 6.57 -2.39 -0.02 0.76 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.73 16 30 H 0.05 1.11 7.95 -2.39 -0.02 1.09 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 0.88 6.57 -2.39 -0.02 0.86 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.07 0.88 7.56 -2.39 -0.02 0.86 16 35 H 0.41 7.60 7.89 -92.71 -0.73 6.87 16 36 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 37 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 38 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 39 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 40 H 0.00 0.21 7.51 -2.39 -0.02 0.20 16 41 H 0.01 0.77 7.39 -2.38 -0.02 0.75 16 42 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.02 0.63 7.91 -2.39 -0.02 0.61 16 Total: -1.00 -71.05 347.71 2.81 -68.24 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.22 Total: 12.15 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 5.24 Total: 2.70 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.63 Total: -111.02 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.05 Total: -19.80 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -71.05 2.81 -68.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691131417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.278 kcal (2) G-P(sol) polarization free energy of solvation -71.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds