Wall clock time and date at job start Mon Mar 30 2020 00:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.53000 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 54.99853 * 4 3 2 6 6 C 1.52997 * 109.47060 * 294.99684 * 4 3 2 7 7 C 1.50699 * 109.47083 * 174.99799 * 4 3 2 8 8 O 1.21285 * 120.00039 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99942 * 179.97438 * 7 4 3 10 10 C 1.46500 * 119.99881 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.63676 * 54.29981 * 11 10 9 13 13 C 1.55154 * 110.71741 * 177.43778 * 11 10 9 14 14 C 1.55131 * 101.48093 * 153.73814 * 13 11 10 15 15 N 1.47422 * 104.94255 * 323.21943 * 14 13 11 16 16 C 1.36934 * 125.64796 * 203.96728 * 15 14 13 17 17 H 1.07996 * 119.99795 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00194 * 0.04632 * 16 15 14 19 19 N 1.31620 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00308 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46802 * 59.99740 * 20 18 16 22 22 H 1.48493 * 109.47328 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47102 * 300.00233 * 20 18 16 24 24 C 1.47019 * 108.70081 * 24.00830 * 15 14 13 25 25 H 1.08998 * 109.46504 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47044 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47171 * 60.00211 * 1 2 3 28 28 H 1.09000 * 109.47044 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.47171 * 119.99789 * 2 1 3 30 30 H 1.08990 * 109.47398 * 60.00139 * 3 2 1 31 31 H 1.09001 * 109.47099 * 299.99832 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 6 4 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 4 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00125 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.47175 * 300.00022 * 10 9 7 37 37 H 1.09002 * 109.47092 * 59.99980 * 10 9 7 38 38 H 1.09002 * 111.00967 * 271.94182 * 13 11 10 39 39 H 1.09006 * 111.00884 * 35.79693 * 13 11 10 40 40 H 1.09004 * 110.41682 * 204.29296 * 14 13 11 41 41 H 1.09000 * 110.30077 * 82.09618 * 14 13 11 42 42 H 0.97003 * 119.99716 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.88021 * 239.51884 * 24 15 14 44 44 H 1.09000 * 110.01207 * 118.43101 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8533 -0.8427 6 6 4.0806 0.8329 1.3064 7 6 4.0723 2.8580 -0.1245 8 8 3.2841 3.7763 -0.2049 9 7 5.3973 3.1034 -0.1460 10 6 5.8855 4.4795 -0.2659 11 6 7.4156 4.4796 -0.2654 12 1 7.8001 3.8147 -1.0387 13 6 7.9644 5.9183 -0.4558 14 6 9.3486 5.8150 0.2369 15 7 9.1295 4.9275 1.3936 16 6 9.8890 4.8989 2.5327 17 1 9.6456 4.2085 3.3267 18 6 10.9713 5.7576 2.6670 19 7 11.2679 6.5989 1.6993 20 14 12.0069 5.7191 4.2212 21 1 12.5984 4.3673 4.3884 22 1 13.0941 6.7252 4.1167 23 1 11.1517 6.0337 5.3937 24 6 7.9612 4.0777 1.1210 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.7175 1.4222 2.1484 33 1 3.7173 -0.1909 1.3961 34 1 5.1705 0.8332 1.3063 35 1 6.0277 2.3690 -0.0813 36 1 5.5221 4.9141 -1.1970 37 1 5.5222 5.0685 0.5762 38 1 8.0707 6.1592 -1.5135 39 1 7.3304 6.6482 0.0477 40 1 9.6811 6.7980 0.5706 41 1 10.0801 5.3785 -0.4431 42 1 12.0245 7.1987 1.7930 43 1 7.1979 4.2418 1.8817 44 1 8.2568 3.0285 1.1132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691131418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:46 Heat of formation + Delta-G solvation = -42.702848 kcal Electronic energy + Delta-G solvation = -20683.882503 eV Core-core repulsion = 17635.734272 eV Total energy + Delta-G solvation = -3048.148231 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.94737 -37.73656 -36.11442 -34.62115 -32.70596 -31.98191 -29.75600 -28.21739 -26.81287 -25.68415 -24.29915 -23.02839 -21.20595 -20.36434 -19.84704 -19.33335 -17.11684 -16.71448 -16.04615 -15.80268 -15.18569 -14.86368 -14.59116 -14.14998 -13.87529 -13.57577 -13.48044 -12.88250 -12.53127 -12.50766 -12.43527 -12.07540 -11.77387 -11.71368 -11.51958 -11.39334 -11.16550 -11.01802 -10.96168 -10.79355 -10.72559 -10.41391 -10.15465 -10.01514 -9.86386 -9.65173 -9.45121 -8.90961 -8.65398 -6.84234 -5.66068 -3.07858 2.72158 3.28237 3.39854 3.43936 3.45409 4.47779 4.53790 4.58088 4.70172 4.95252 5.01948 5.08638 5.13077 5.26674 5.33880 5.40891 5.45449 5.52420 5.56626 5.63223 5.66812 5.70402 5.76415 5.88740 5.90305 5.93082 6.08102 6.12446 6.13409 6.19447 6.34433 6.49061 6.55238 6.58938 6.73077 6.90861 7.50637 7.60555 7.61541 7.85153 8.31266 8.35989 9.21460 9.82439 10.47410 11.37863 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.003323 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.427261 B = 8423.929685 C = 9034.067187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.100 4.100 4 C -0.111 4.111 5 H 0.095 0.905 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.546 6.546 9 N -0.725 5.725 10 C 0.132 3.868 11 C -0.114 4.114 12 H 0.075 0.925 13 C -0.136 4.136 14 C 0.152 3.848 15 N -0.604 5.604 16 C -0.224 4.224 17 H 0.076 0.924 18 C -0.011 4.011 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.142 3.858 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.012 0.988 42 H 0.253 0.747 43 H 0.024 0.976 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.486 -11.971 -5.385 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.138 4.138 4 C -0.133 4.133 5 H 0.113 0.887 6 C -0.204 4.204 7 C 0.299 3.701 8 O -0.424 6.424 9 N -0.376 5.376 10 C 0.008 3.992 11 C -0.134 4.134 12 H 0.093 0.907 13 C -0.175 4.175 14 C 0.027 3.973 15 N -0.330 5.330 16 C -0.352 4.352 17 H 0.094 0.906 18 C -0.207 4.207 19 N -0.571 5.571 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.016 3.984 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.235 0.765 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.125 0.875 41 H 0.030 0.970 42 H 0.063 0.937 43 H 0.041 0.959 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -15.848 -11.180 -5.344 20.118 hybrid contribution 0.983 -0.439 0.762 1.319 sum -14.865 -11.620 -4.581 19.416 Atomic orbital electron populations 1.21764 0.95842 1.01395 1.01987 1.21608 0.95959 0.96757 1.02042 1.21425 0.92364 0.96501 1.03533 1.21343 0.97787 0.93627 1.00526 0.88694 1.21839 1.01425 1.01239 0.95909 1.20663 0.82293 0.91268 0.75855 1.90685 1.55403 1.46535 1.49744 1.46121 1.06957 1.10067 1.74454 1.21447 0.93706 0.82258 1.01771 1.22441 0.92441 0.99550 0.98933 0.90663 1.23044 1.00478 0.94005 0.99977 1.21967 0.89766 0.98564 0.86987 1.44490 1.30654 1.40953 1.16941 1.19028 1.06310 1.16624 0.93243 0.90597 1.24793 0.98807 0.98793 0.98298 1.69788 1.30092 1.25429 1.31827 0.86144 0.79740 0.77184 0.82380 1.21231 1.21543 1.21144 1.21313 0.90373 0.93926 0.92768 0.92885 0.92683 0.92736 0.92083 0.91704 0.91290 0.91194 0.91972 0.91300 0.91933 0.76520 0.91778 0.91352 0.92107 0.91858 0.87543 0.97041 0.93659 0.95855 0.96489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -0.93 5.69 -26.72 -0.15 -1.09 16 3 C -0.10 -0.97 4.03 -26.73 -0.11 -1.08 16 4 C -0.11 -1.08 2.72 -91.77 -0.25 -1.33 16 5 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 6 C -0.15 -1.25 8.84 37.16 0.33 -0.92 16 7 C 0.51 6.92 7.15 -10.99 -0.08 6.84 16 8 O -0.55 -9.49 15.92 5.55 0.09 -9.40 16 9 N -0.72 -9.36 5.32 -60.29 -0.32 -9.68 16 10 C 0.13 1.98 5.00 -4.04 -0.02 1.96 16 11 C -0.11 -1.91 2.98 -88.79 -0.26 -2.17 16 12 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 13 C -0.14 -2.53 6.55 -24.46 -0.16 -2.69 16 14 C 0.15 3.68 5.89 -2.41 -0.01 3.66 16 15 N -0.60 -15.47 3.40 -169.94 -0.58 -16.05 16 16 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 17 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 18 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 19 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 20 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C 0.14 2.89 6.64 -3.07 -0.02 2.87 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.76 7.95 -51.93 -0.41 0.34 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.47 6.57 -51.93 -0.34 0.13 16 34 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 35 H 0.40 4.36 7.82 -40.82 -0.32 4.05 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.18 8.05 -51.93 -0.42 0.77 16 40 H 0.11 2.91 5.87 -51.93 -0.31 2.60 16 41 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.02 0.49 7.73 -51.92 -0.40 0.09 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 346.74 15.07 5.23 5.23 Total: -1.00 -31.80 346.74 -8.64 -40.43 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -7.97 Total: 0.28 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: -0.62 Total: -1.48 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.34 Total: -52.12 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.40 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.80 -8.64 -40.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691131418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.270 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds