Wall clock time and date at job start Mon Mar 30 2020 00:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46774 * 2 1 4 4 C 1.53000 * 109.46867 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47398 * 54.99853 * 4 3 2 6 6 C 1.52997 * 109.47060 * 294.99684 * 4 3 2 7 7 C 1.50699 * 109.47083 * 174.99799 * 4 3 2 8 8 O 1.21285 * 120.00039 * 359.97438 * 7 4 3 9 9 N 1.34774 * 119.99942 * 179.97438 * 7 4 3 10 10 C 1.46500 * 119.99881 * 180.02562 * 9 7 4 11 11 C 1.53005 * 109.47094 * 179.97438 * 10 9 7 12 12 H 1.08998 * 110.63676 * 54.29981 * 11 10 9 13 13 C 1.55154 * 110.71741 * 177.43778 * 11 10 9 14 14 C 1.55131 * 101.48093 * 153.73814 * 13 11 10 15 15 N 1.47422 * 104.94255 * 323.21943 * 14 13 11 16 16 C 1.36934 * 125.64796 * 203.96728 * 15 14 13 17 17 H 1.07996 * 119.99795 * 180.02562 * 16 15 14 18 18 C 1.38810 * 120.00194 * 0.04632 * 16 15 14 19 19 N 1.31620 * 119.99853 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00308 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46802 * 59.99740 * 20 18 16 22 22 H 1.48493 * 109.47328 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47102 * 300.00233 * 20 18 16 24 24 C 1.47019 * 108.70081 * 24.00830 * 15 14 13 25 25 H 1.08998 * 109.46504 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47044 * 300.00132 * 1 2 3 27 27 H 1.09001 * 109.47171 * 60.00211 * 1 2 3 28 28 H 1.09000 * 109.47044 * 239.99868 * 2 1 3 29 29 H 1.09001 * 109.47171 * 119.99789 * 2 1 3 30 30 H 1.08990 * 109.47398 * 60.00139 * 3 2 1 31 31 H 1.09001 * 109.47099 * 299.99832 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 6 4 3 33 33 H 1.08998 * 109.47533 * 59.99948 * 6 4 3 34 34 H 1.08996 * 109.47853 * 180.02562 * 6 4 3 35 35 H 0.96998 * 120.00125 * 359.97438 * 9 7 4 36 36 H 1.09000 * 109.47175 * 300.00022 * 10 9 7 37 37 H 1.09002 * 109.47092 * 59.99980 * 10 9 7 38 38 H 1.09002 * 111.00967 * 271.94182 * 13 11 10 39 39 H 1.09006 * 111.00884 * 35.79693 * 13 11 10 40 40 H 1.09004 * 110.41682 * 204.29296 * 14 13 11 41 41 H 1.09000 * 110.30077 * 82.09618 * 14 13 11 42 42 H 0.97003 * 119.99716 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.88021 * 239.51884 * 24 15 14 44 44 H 1.09000 * 110.01207 * 118.43101 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9331 0.8533 -0.8427 6 6 4.0806 0.8329 1.3064 7 6 4.0723 2.8580 -0.1245 8 8 3.2841 3.7763 -0.2049 9 7 5.3973 3.1034 -0.1460 10 6 5.8855 4.4795 -0.2659 11 6 7.4156 4.4796 -0.2654 12 1 7.8001 3.8147 -1.0387 13 6 7.9644 5.9183 -0.4558 14 6 9.3486 5.8150 0.2369 15 7 9.1295 4.9275 1.3936 16 6 9.8890 4.8989 2.5327 17 1 9.6456 4.2085 3.3267 18 6 10.9713 5.7576 2.6670 19 7 11.2679 6.5989 1.6993 20 14 12.0069 5.7191 4.2212 21 1 12.5984 4.3673 4.3884 22 1 13.0941 6.7252 4.1167 23 1 11.1517 6.0337 5.3937 24 6 7.9612 4.0777 1.1210 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9564 -0.8900 32 1 3.7175 1.4222 2.1484 33 1 3.7173 -0.1909 1.3961 34 1 5.1705 0.8332 1.3063 35 1 6.0277 2.3690 -0.0813 36 1 5.5221 4.9141 -1.1970 37 1 5.5222 5.0685 0.5762 38 1 8.0707 6.1592 -1.5135 39 1 7.3304 6.6482 0.0477 40 1 9.6811 6.7980 0.5706 41 1 10.0801 5.3785 -0.4431 42 1 12.0245 7.1987 1.7930 43 1 7.1979 4.2418 1.8817 44 1 8.2568 3.0285 1.1132 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691131418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:45 Heat of formation + Delta-G solvation = -62.394753 kcal Electronic energy + Delta-G solvation = -20684.736408 eV Core-core repulsion = 17635.734272 eV Total energy + Delta-G solvation = -3049.002136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.03650 -39.32124 -36.94404 -36.02387 -34.35371 -32.89998 -31.51320 -29.81525 -27.53112 -27.33560 -25.70166 -24.17118 -22.27997 -21.76111 -21.29423 -20.50481 -18.89448 -17.96679 -17.27675 -16.77063 -16.69227 -16.33307 -15.76530 -15.58135 -14.89109 -14.82674 -14.47976 -14.27629 -13.89445 -13.55040 -13.45817 -13.35662 -13.14048 -13.09997 -12.82923 -12.71816 -12.64777 -12.12608 -12.06052 -11.91077 -11.83204 -11.82489 -11.70691 -11.57150 -11.39242 -11.35570 -10.74508 -10.66336 -10.06606 -8.88479 -7.77759 -5.22053 1.46140 1.49319 1.55748 1.67105 2.24041 2.49525 3.31690 3.61798 3.71111 3.80289 3.86647 3.98506 3.99467 4.06327 4.33119 4.39541 4.42618 4.45359 4.63984 4.64959 4.70547 4.79888 4.83526 4.90746 4.92955 4.97467 5.04626 5.06592 5.12314 5.15239 5.25440 5.32760 5.35611 5.44626 5.46615 5.49151 5.54578 5.65342 5.82518 6.31632 6.58586 7.10876 7.27633 7.78926 8.42457 9.24063 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.033348 B = 0.003323 C = 0.003099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.427261 B = 8423.929685 C = 9034.067187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.103 4.103 5 H 0.122 0.878 6 C -0.144 4.144 7 C 0.509 3.491 8 O -0.590 6.590 9 N -0.717 5.717 10 C 0.143 3.857 11 C -0.093 4.093 12 H 0.097 0.903 13 C -0.124 4.124 14 C 0.152 3.848 15 N -0.629 5.629 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.069 4.069 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.277 1.277 22 H -0.293 1.293 23 H -0.278 1.278 24 C 0.139 3.861 25 H 0.065 0.935 26 H 0.048 0.952 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.070 0.930 41 H -0.009 1.009 42 H 0.247 0.753 43 H 0.018 0.982 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.149 -14.177 -5.675 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.136 4.136 4 C -0.124 4.124 5 H 0.140 0.860 6 C -0.202 4.202 7 C 0.297 3.703 8 O -0.470 6.470 9 N -0.369 5.369 10 C 0.019 3.981 11 C -0.112 4.112 12 H 0.115 0.885 13 C -0.163 4.163 14 C 0.027 3.973 15 N -0.355 5.355 16 C -0.370 4.370 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.599 5.599 20 Si 0.808 3.192 21 H -0.203 1.203 22 H -0.219 1.219 23 H -0.204 1.204 24 C 0.014 3.986 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.009 0.991 42 H 0.057 0.943 43 H 0.036 0.964 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -16.522 -13.433 -5.634 22.027 hybrid contribution 1.160 0.242 0.853 1.460 sum -15.362 -13.190 -4.781 20.805 Atomic orbital electron populations 1.21786 0.95805 1.02074 1.01555 1.21583 0.96004 0.95069 1.03127 1.21394 0.92511 0.97842 1.01885 1.21384 0.97567 0.91233 1.02255 0.86009 1.21853 1.01766 1.02115 0.94439 1.21392 0.81854 0.92495 0.74535 1.90669 1.56424 1.48235 1.51707 1.46025 1.07277 1.09559 1.74022 1.21166 0.92218 0.83378 1.01362 1.22281 0.93336 0.98347 0.97275 0.88466 1.22891 0.96962 0.95427 1.00991 1.21763 0.92464 0.96314 0.86754 1.44815 1.31737 1.42238 1.16682 1.19420 1.06727 1.16502 0.94315 0.90210 1.25648 1.00272 0.98797 1.01372 1.70051 1.30293 1.26062 1.33528 0.85121 0.77909 0.77229 0.78893 1.20254 1.21943 1.20429 1.21483 0.88610 0.93797 0.94709 0.91615 0.93242 0.93151 0.90827 0.90651 0.93128 0.92788 0.93506 0.89001 0.91357 0.75037 0.90961 0.93376 0.89193 0.92135 0.91189 0.99098 0.94322 0.96360 0.95172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.49 5.69 30.60 0.17 -1.32 16 3 C -0.10 -1.77 4.03 30.60 0.12 -1.65 16 4 C -0.10 -1.76 2.72 -11.54 -0.03 -1.79 16 5 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 6 C -0.14 -2.07 8.84 71.98 0.64 -1.44 16 7 C 0.51 12.99 7.15 87.66 0.63 13.62 16 8 O -0.59 -20.33 15.92 -3.05 -0.05 -20.37 16 9 N -0.72 -16.96 5.32 -463.05 -2.46 -19.43 16 10 C 0.14 4.04 5.00 86.38 0.43 4.47 16 11 C -0.09 -2.92 2.98 -9.61 -0.03 -2.95 16 12 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 13 C -0.12 -4.47 6.55 32.06 0.21 -4.26 16 14 C 0.15 7.46 5.89 86.93 0.51 7.98 16 15 N -0.63 -32.32 3.40 -691.57 -2.35 -34.67 16 16 C -0.24 -13.56 10.27 84.03 0.86 -12.69 16 17 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 18 C -0.07 -3.90 5.49 84.86 0.47 -3.44 16 19 N -0.95 -56.91 10.09 21.65 0.22 -56.69 16 20 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 21 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 22 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.14 5.49 6.64 86.73 0.58 6.06 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 0.79 6.57 -2.39 -0.02 0.77 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.14 7.95 -2.39 -0.02 1.12 16 32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 0.92 6.57 -2.39 -0.02 0.90 16 34 H 0.07 0.91 7.56 -2.39 -0.02 0.89 16 35 H 0.41 7.74 7.82 -92.71 -0.72 7.02 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.05 1.58 8.00 -2.39 -0.02 1.56 16 38 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 39 H 0.06 2.22 8.05 -2.38 -0.02 2.20 16 40 H 0.07 3.96 5.87 -2.39 -0.01 3.95 16 41 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 43 H 0.02 0.75 7.73 -2.38 -0.02 0.73 16 44 H 0.03 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -70.48 346.74 2.89 -67.59 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.23 Total: 14.43 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.27 Total: 1.38 kcal Atomic # 7 Polarization: -106.20 SS G_CDS: -4.59 Total: -110.79 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -70.48 2.89 -67.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691131418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.199 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds