Wall clock time and date at job start Mon Mar 30 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47531 * 2 1 4 4 C 1.53000 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47290 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99832 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99489 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00565 * 4.95485 * 7 5 4 9 9 C 1.52991 * 109.47342 * 270.00211 * 8 7 5 10 10 C 1.46498 * 119.99241 * 184.95818 * 7 5 4 11 11 H 1.09003 * 110.78578 * 50.77707 * 10 7 5 12 12 C 1.55399 * 110.69680 * 287.37987 * 10 7 5 13 13 C 1.54913 * 101.67112 * 277.05333 * 12 10 7 14 14 N 1.47427 * 104.82777 * 323.07319 * 13 12 10 15 15 C 1.36936 * 125.65007 * 204.08959 * 14 13 12 16 16 H 1.07997 * 120.00437 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99686 * 0.04356 * 15 14 13 18 18 N 1.31621 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47343 * 90.00187 * 19 17 15 21 21 H 1.48510 * 109.47057 * 210.00014 * 19 17 15 22 22 H 1.48503 * 109.47274 * 329.99694 * 19 17 15 23 23 C 1.47026 * 108.70378 * 24.12976 * 14 13 12 24 24 H 1.08993 * 109.47882 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46596 * 300.00335 * 1 2 3 26 26 H 1.09002 * 109.46850 * 59.99632 * 1 2 3 27 27 H 1.09004 * 109.46596 * 239.99665 * 2 1 3 28 28 H 1.09002 * 109.46850 * 120.00368 * 2 1 3 29 29 H 1.09004 * 109.47454 * 60.00190 * 3 2 1 30 30 H 1.09002 * 109.47354 * 300.00059 * 3 2 1 31 31 H 1.08996 * 109.47226 * 59.99665 * 4 3 2 32 32 H 1.09007 * 109.46750 * 299.99636 * 4 3 2 33 33 H 1.09000 * 109.46686 * 30.00349 * 8 7 5 34 34 H 1.09002 * 109.46895 * 149.99972 * 8 7 5 35 35 H 1.09000 * 109.47343 * 299.99736 * 9 8 7 36 36 H 1.09002 * 109.47320 * 60.00022 * 9 8 7 37 37 H 1.08999 * 109.47486 * 179.97438 * 9 8 7 38 38 H 1.09005 * 110.89313 * 158.98218 * 12 10 7 39 39 H 1.09000 * 111.06955 * 35.20171 * 12 10 7 40 40 H 1.08994 * 110.36847 * 204.23616 * 13 12 10 41 41 H 1.08998 * 110.45695 * 81.95258 * 13 12 10 42 42 H 0.97000 * 120.00411 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.88183 * 118.35979 * 23 14 13 44 44 H 1.08998 * 109.88105 * 239.36559 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0725 2.8631 0.0000 6 8 3.2845 3.7849 0.0004 7 7 5.3977 3.1092 0.0001 8 6 6.3487 2.0004 -0.1100 9 6 6.7025 1.4912 1.2887 10 6 5.8869 4.4857 0.1104 11 1 5.4212 4.9953 0.9539 12 6 5.6392 5.2641 -1.2115 13 6 6.8586 4.8314 -2.0633 14 7 7.9749 4.7395 -1.1047 15 6 9.3042 4.8491 -1.4147 16 1 10.0487 4.7665 -0.6368 17 6 9.6947 5.0667 -2.7289 18 7 8.7872 5.1682 -3.6769 19 14 11.5080 5.2154 -3.1520 20 1 12.0530 3.8721 -3.4740 21 1 11.6706 6.1100 -4.3263 22 1 12.2420 5.7826 -1.9924 23 6 7.4246 4.5099 0.2392 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9337 0.9283 0.8892 33 1 5.8996 1.1926 -0.6879 34 1 7.2533 2.3459 -0.6105 35 1 7.1516 2.2989 1.8666 36 1 5.7980 1.1456 1.7892 37 1 7.4098 0.6658 1.2068 38 1 5.6470 6.3400 -1.0364 39 1 4.7053 4.9535 -1.6801 40 1 7.0738 5.5801 -2.8256 41 1 6.6752 3.8617 -2.5260 42 1 9.0601 5.3198 -4.5953 43 1 7.7793 3.5548 0.6268 44 1 7.7280 5.3163 0.9068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698575211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:08 Heat of formation + Delta-G solvation = -21.276688 kcal Electronic energy + Delta-G solvation = -21689.513295 eV Core-core repulsion = 18642.294172 eV Total energy + Delta-G solvation = -3047.219123 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.00031 -37.46229 -35.32806 -34.92646 -32.40194 -30.50122 -30.41779 -28.67469 -27.46402 -24.86360 -24.31640 -22.90270 -21.36640 -20.36840 -19.94745 -18.24006 -16.98793 -16.63663 -16.28933 -15.82338 -14.93138 -14.63535 -14.02633 -13.91996 -13.76427 -13.56924 -13.09172 -13.04654 -12.48833 -12.31601 -12.11432 -11.96490 -11.66224 -11.57978 -11.43004 -11.22008 -11.05722 -10.96559 -10.89307 -10.82496 -10.64193 -10.56079 -10.14178 -10.08741 -9.90494 -9.62181 -9.28844 -8.66843 -8.19166 -6.85718 -5.66433 -3.09381 2.96146 3.33575 3.38266 3.43347 3.45434 4.46809 4.62474 4.84048 4.85971 5.07642 5.16957 5.22838 5.37888 5.40815 5.44691 5.50098 5.53968 5.60303 5.66118 5.73700 5.76166 5.79602 5.83101 5.93281 5.94950 6.01930 6.07237 6.19730 6.32257 6.32721 6.37879 6.46312 6.61160 6.72724 6.79072 7.11947 7.54077 7.61343 7.81339 7.86794 8.35153 8.54052 9.19855 9.80534 10.45509 11.36591 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.004268 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.249312 B = 6558.220801 C = 6683.886696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.104 4.104 4 C -0.140 4.140 5 C 0.510 3.490 6 O -0.547 6.547 7 N -0.592 5.592 8 C 0.095 3.905 9 C -0.169 4.169 10 C 0.134 3.866 11 H 0.076 0.924 12 C -0.150 4.150 13 C 0.155 3.845 14 N -0.602 5.602 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.919 5.919 19 Si 0.914 3.086 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.122 3.878 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.104 0.896 41 H 0.010 0.990 42 H 0.252 0.748 43 H 0.039 0.961 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.203 -10.220 8.135 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.142 4.142 4 C -0.180 4.180 5 C 0.298 3.702 6 O -0.425 6.425 7 N -0.325 5.325 8 C -0.028 4.028 9 C -0.227 4.227 10 C 0.031 3.969 11 H 0.094 0.906 12 C -0.190 4.190 13 C 0.031 3.969 14 N -0.329 5.329 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.744 3.256 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.004 4.004 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.122 0.878 41 H 0.028 0.972 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -10.457 -9.680 7.951 16.318 hybrid contribution 1.071 -0.036 -0.242 1.099 sum -9.385 -9.716 7.709 15.554 Atomic orbital electron populations 1.21759 0.95878 1.01314 1.01984 1.21550 0.95956 0.96868 1.01877 1.21367 0.93124 0.96235 1.03479 1.21758 0.97595 0.94621 1.04007 1.20617 0.81907 0.91439 0.76187 1.90658 1.55047 1.46619 1.50184 1.47998 1.05373 1.07351 1.71766 1.21687 0.95295 0.88681 0.97157 1.22270 1.01259 1.01536 0.97637 1.22036 0.94985 0.81266 0.98604 0.90613 1.23364 1.00361 0.99029 0.96244 1.21902 0.82871 0.99830 0.92323 1.44545 1.02541 1.84674 1.01113 1.19048 0.81264 1.42087 0.92881 0.90506 1.24792 0.97827 1.02211 0.95687 1.69825 1.30609 1.56095 1.00242 0.86087 0.84275 0.77474 0.77714 1.21659 1.21689 1.20722 1.21715 0.89761 0.98785 0.90113 0.92949 0.92752 0.92667 0.92017 0.92137 0.91413 0.91271 0.89187 0.89250 0.91111 0.87740 0.91890 0.93042 0.91712 0.91632 0.91689 0.87795 0.97199 0.93734 0.94308 0.95099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -1.10 5.93 -26.74 -0.16 -1.26 16 3 C -0.10 -1.18 4.50 -26.74 -0.12 -1.30 16 4 C -0.14 -1.66 4.37 -27.88 -0.12 -1.78 16 5 C 0.51 8.30 7.38 -10.98 -0.08 8.22 16 6 O -0.55 -10.69 15.14 5.56 0.08 -10.60 16 7 N -0.59 -9.84 2.58 -163.88 -0.42 -10.26 16 8 C 0.09 1.39 5.16 -4.05 -0.02 1.37 16 9 C -0.17 -2.01 9.87 37.15 0.37 -1.64 16 10 C 0.13 2.53 3.19 -65.96 -0.21 2.32 16 11 H 0.08 1.39 8.13 -51.93 -0.42 0.97 16 12 C -0.15 -3.16 6.53 -24.45 -0.16 -3.32 16 13 C 0.16 3.82 5.87 -2.53 -0.01 3.81 16 14 N -0.60 -14.98 3.07 -170.07 -0.52 -15.50 16 15 C -0.22 -6.08 10.27 -15.06 -0.15 -6.24 16 16 H 0.08 2.01 7.83 -52.49 -0.41 1.59 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 18 N -0.92 -26.57 10.09 55.49 0.56 -26.01 16 19 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 C 0.12 2.49 6.01 -3.06 -0.02 2.47 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 31 H 0.09 0.98 7.25 -51.93 -0.38 0.60 16 32 H 0.09 0.90 6.94 -51.93 -0.36 0.54 16 33 H 0.07 0.89 6.48 -51.93 -0.34 0.56 16 34 H 0.10 1.89 6.08 -51.93 -0.32 1.58 16 35 H 0.06 0.81 6.83 -51.93 -0.35 0.46 16 36 H 0.05 0.54 6.94 -51.93 -0.36 0.18 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.06 1.38 7.20 -51.93 -0.37 1.01 16 40 H 0.10 2.90 5.87 -51.93 -0.30 2.60 16 41 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 43 H 0.04 0.74 4.27 -51.93 -0.22 0.52 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -30.47 337.88 -8.27 -38.74 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.62 Total: 0.43 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: -0.42 Total: 1.40 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: -0.39 Total: -51.77 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.60 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.47 -8.27 -38.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698575211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.464 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds