Wall clock time and date at job start Mon Mar 30 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52989 * 109.47531 * 2 1 4 4 C 1.53000 * 109.47302 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47290 * 180.02562 * 4 3 2 6 6 O 1.21275 * 119.99832 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99489 * 179.97438 * 5 4 3 8 8 C 1.46496 * 120.00565 * 4.95485 * 7 5 4 9 9 C 1.52991 * 109.47342 * 270.00211 * 8 7 5 10 10 C 1.46498 * 119.99241 * 184.95818 * 7 5 4 11 11 H 1.09003 * 110.78578 * 50.77707 * 10 7 5 12 12 C 1.55399 * 110.69680 * 287.37987 * 10 7 5 13 13 C 1.54913 * 101.67112 * 277.05333 * 12 10 7 14 14 N 1.47427 * 104.82777 * 323.07319 * 13 12 10 15 15 C 1.36936 * 125.65007 * 204.08959 * 14 13 12 16 16 H 1.07997 * 120.00437 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99686 * 0.04356 * 15 14 13 18 18 N 1.31621 * 120.00129 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 119.99970 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47343 * 90.00187 * 19 17 15 21 21 H 1.48510 * 109.47057 * 210.00014 * 19 17 15 22 22 H 1.48503 * 109.47274 * 329.99694 * 19 17 15 23 23 C 1.47026 * 108.70378 * 24.12976 * 14 13 12 24 24 H 1.08993 * 109.47882 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46596 * 300.00335 * 1 2 3 26 26 H 1.09002 * 109.46850 * 59.99632 * 1 2 3 27 27 H 1.09004 * 109.46596 * 239.99665 * 2 1 3 28 28 H 1.09002 * 109.46850 * 120.00368 * 2 1 3 29 29 H 1.09004 * 109.47454 * 60.00190 * 3 2 1 30 30 H 1.09002 * 109.47354 * 300.00059 * 3 2 1 31 31 H 1.08996 * 109.47226 * 59.99665 * 4 3 2 32 32 H 1.09007 * 109.46750 * 299.99636 * 4 3 2 33 33 H 1.09000 * 109.46686 * 30.00349 * 8 7 5 34 34 H 1.09002 * 109.46895 * 149.99972 * 8 7 5 35 35 H 1.09000 * 109.47343 * 299.99736 * 9 8 7 36 36 H 1.09002 * 109.47320 * 60.00022 * 9 8 7 37 37 H 1.08999 * 109.47486 * 179.97438 * 9 8 7 38 38 H 1.09005 * 110.89313 * 158.98218 * 12 10 7 39 39 H 1.09000 * 111.06955 * 35.20171 * 12 10 7 40 40 H 1.08994 * 110.36847 * 204.23616 * 13 12 10 41 41 H 1.08998 * 110.45695 * 81.95258 * 13 12 10 42 42 H 0.97000 * 120.00411 * 180.02562 * 18 17 15 43 43 H 1.09002 * 109.88183 * 118.35979 * 23 14 13 44 44 H 1.08998 * 109.88105 * 239.36559 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0725 2.8631 0.0000 6 8 3.2845 3.7849 0.0004 7 7 5.3977 3.1092 0.0001 8 6 6.3487 2.0004 -0.1100 9 6 6.7025 1.4912 1.2887 10 6 5.8869 4.4857 0.1104 11 1 5.4212 4.9953 0.9539 12 6 5.6392 5.2641 -1.2115 13 6 6.8586 4.8314 -2.0633 14 7 7.9749 4.7395 -1.1047 15 6 9.3042 4.8491 -1.4147 16 1 10.0487 4.7665 -0.6368 17 6 9.6947 5.0667 -2.7289 18 7 8.7872 5.1682 -3.6769 19 14 11.5080 5.2154 -3.1520 20 1 12.0530 3.8721 -3.4740 21 1 11.6706 6.1100 -4.3263 22 1 12.2420 5.7826 -1.9924 23 6 7.4246 4.5099 0.2392 24 1 -0.3634 -1.0275 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9330 0.9286 -0.8908 32 1 3.9337 0.9283 0.8892 33 1 5.8996 1.1926 -0.6879 34 1 7.2533 2.3459 -0.6105 35 1 7.1516 2.2989 1.8666 36 1 5.7980 1.1456 1.7892 37 1 7.4098 0.6658 1.2068 38 1 5.6470 6.3400 -1.0364 39 1 4.7053 4.9535 -1.6801 40 1 7.0738 5.5801 -2.8256 41 1 6.6752 3.8617 -2.5260 42 1 9.0601 5.3198 -4.5953 43 1 7.7793 3.5548 0.6268 44 1 7.7280 5.3163 0.9068 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698575211.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:08 Heat of formation + Delta-G solvation = -38.209271 kcal Electronic energy + Delta-G solvation = -21690.247546 eV Core-core repulsion = 18642.294172 eV Total energy + Delta-G solvation = -3047.953374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.37093 -39.03471 -36.43496 -36.21426 -34.23571 -31.99330 -31.38880 -30.30553 -29.13934 -26.51370 -25.55209 -24.10053 -22.41815 -21.94195 -21.47608 -19.59343 -18.92099 -18.06795 -17.54286 -16.86524 -16.80182 -15.97913 -15.52801 -15.35775 -14.96776 -14.64231 -14.43386 -14.19415 -13.81807 -13.62929 -13.46164 -13.39097 -13.22611 -12.91287 -12.82216 -12.66286 -12.38806 -12.27704 -12.02726 -11.99809 -11.94792 -11.85020 -11.81226 -11.65631 -11.53168 -11.39714 -10.73556 -10.65815 -9.58327 -8.88889 -7.75827 -5.20859 1.48585 1.50124 1.58842 1.69822 2.05705 2.50574 3.35194 3.50297 3.70081 3.87001 3.97151 4.04544 4.05168 4.09457 4.24963 4.37645 4.41612 4.47866 4.56871 4.63803 4.66329 4.69558 4.78422 4.85089 4.94622 4.97480 5.01916 5.04039 5.04974 5.13777 5.18364 5.31310 5.40843 5.41964 5.47959 5.52984 5.57631 5.69724 5.78968 6.28484 6.53935 7.10034 7.25310 7.77235 8.42021 9.26128 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.031765 B = 0.004268 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.249312 B = 6558.220801 C = 6683.886696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.101 4.101 4 C -0.131 4.131 5 C 0.504 3.496 6 O -0.585 6.585 7 N -0.596 5.596 8 C 0.094 3.906 9 C -0.160 4.160 10 C 0.145 3.855 11 H 0.085 0.915 12 C -0.139 4.139 13 C 0.169 3.831 14 N -0.618 5.618 15 C -0.234 4.234 16 H 0.086 0.914 17 C -0.067 4.067 18 N -0.950 5.950 19 Si 0.980 3.020 20 H -0.285 1.285 21 H -0.298 1.298 22 H -0.269 1.269 23 C 0.124 3.876 24 H 0.065 0.935 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.047 0.953 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.068 0.932 41 H -0.013 1.013 42 H 0.245 0.755 43 H 0.059 0.941 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 -12.238 9.815 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.139 4.139 4 C -0.170 4.170 5 C 0.295 3.705 6 O -0.466 6.466 7 N -0.328 5.328 8 C -0.028 4.028 9 C -0.218 4.218 10 C 0.040 3.960 11 H 0.103 0.897 12 C -0.179 4.179 13 C 0.044 3.956 14 N -0.344 5.344 15 C -0.362 4.362 16 H 0.103 0.897 17 C -0.259 4.259 18 N -0.600 5.600 19 Si 0.809 3.191 20 H -0.212 1.212 21 H -0.225 1.225 22 H -0.194 1.194 23 C -0.001 4.001 24 H 0.085 0.915 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.005 0.995 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.272 -11.727 9.671 18.346 hybrid contribution 0.981 0.595 -0.751 1.371 sum -9.291 -11.132 8.920 17.024 Atomic orbital electron populations 1.21778 0.95654 1.02105 1.01602 1.21516 0.96158 0.95000 1.02978 1.21334 0.92884 0.97767 1.01929 1.21810 0.97680 0.91550 1.05988 1.21444 0.81192 0.93022 0.74888 1.90643 1.55863 1.48255 1.51841 1.48103 1.06146 1.06781 1.71731 1.21771 0.93478 0.88398 0.99134 1.22193 1.02602 1.01601 0.95420 1.21815 0.94065 0.82780 0.97299 0.89661 1.23179 0.98315 0.99370 0.97029 1.21534 0.84458 0.97451 0.92203 1.44729 1.02106 1.84715 1.02877 1.19442 0.82512 1.41076 0.93202 0.89651 1.25624 1.01865 1.02658 0.95750 1.70079 1.32352 1.57414 1.00140 0.85046 0.79572 0.77214 0.77276 1.21216 1.22499 1.19367 1.21833 0.90607 0.99707 0.87980 0.91548 0.92920 0.93373 0.91263 0.90589 0.92551 0.93392 0.87658 0.86400 0.88809 0.91450 0.93046 0.90952 0.89899 0.91672 0.92157 0.91426 0.99472 0.94492 0.92351 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.91 71.98 0.71 -1.53 16 2 C -0.12 -1.78 5.93 30.59 0.18 -1.60 16 3 C -0.10 -2.12 4.50 30.59 0.14 -1.98 16 4 C -0.13 -2.74 4.37 29.85 0.13 -2.61 16 5 C 0.50 15.69 7.38 87.66 0.65 16.34 16 6 O -0.59 -22.69 15.14 -3.02 -0.05 -22.73 16 7 N -0.60 -18.99 2.58 -790.80 -2.04 -21.03 16 8 C 0.09 2.57 5.16 86.38 0.45 3.01 16 9 C -0.16 -3.27 9.87 71.98 0.71 -2.56 16 10 C 0.14 5.37 3.19 46.27 0.15 5.51 16 11 H 0.09 3.04 8.13 -2.39 -0.02 3.02 16 12 C -0.14 -5.96 6.53 32.07 0.21 -5.75 16 13 C 0.17 8.58 5.87 86.86 0.51 9.09 16 14 N -0.62 -31.06 3.07 -691.97 -2.12 -33.19 16 15 C -0.23 -12.70 10.27 84.03 0.86 -11.83 16 16 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -3.71 5.49 84.86 0.47 -3.25 16 18 N -0.95 -56.59 10.09 21.65 0.22 -56.37 16 19 Si 0.98 44.97 29.55 68.60 2.03 47.00 16 20 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 C 0.12 4.94 6.01 86.73 0.52 5.46 16 24 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.05 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 1.30 8.10 -2.38 -0.02 1.29 16 30 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 31 H 0.11 1.93 7.25 -2.39 -0.02 1.92 16 32 H 0.12 1.84 6.94 -2.38 -0.02 1.82 16 33 H 0.09 2.10 6.48 -2.39 -0.02 2.09 16 34 H 0.07 2.38 6.08 -2.39 -0.01 2.37 16 35 H 0.05 1.18 6.83 -2.39 -0.02 1.16 16 36 H 0.07 1.20 6.94 -2.39 -0.02 1.18 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.06 2.62 7.20 -2.39 -0.02 2.60 16 40 H 0.07 3.97 5.87 -2.39 -0.01 3.95 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 43 H 0.06 2.15 4.27 -2.39 -0.01 2.14 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.47 337.88 4.68 -62.79 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.96 Total: 15.21 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: 5.68 Total: 8.31 kcal Atomic # 7 Polarization: -106.64 SS G_CDS: -3.95 Total: -110.59 kcal Atomic # 8 Polarization: -22.69 SS G_CDS: -0.05 Total: -22.73 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -67.47 4.68 -62.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698575211.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.583 kcal (2) G-P(sol) polarization free energy of solvation -67.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds