Wall clock time and date at job start Mon Mar 30 2020 00:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 C 1.52993 * 109.47176 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47167 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00119 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00034 * 180.27721 * 5 4 3 8 8 C 1.46500 * 120.00114 * 179.73052 * 7 5 4 9 9 C 1.52998 * 109.47233 * 175.12819 * 8 7 5 10 10 N 1.46504 * 110.01384 * 303.89845 * 9 8 7 11 11 C 1.36935 * 120.00238 * 301.46100 * 10 9 8 12 12 H 1.08004 * 119.99665 * 354.60705 * 11 10 9 13 13 C 1.38803 * 120.00122 * 174.60616 * 11 10 9 14 14 N 1.31615 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00108 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47222 * 60.00116 * 15 13 11 17 17 H 1.48505 * 109.47433 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47041 * 300.00185 * 15 13 11 19 19 C 1.54268 * 110.03472 * 182.45664 * 9 8 7 20 20 C 1.54883 * 104.19573 * 217.10494 * 19 9 8 21 21 C 1.54893 * 102.75251 * 37.94262 * 20 19 9 22 22 C 1.53881 * 110.03276 * 65.28891 * 9 8 7 23 23 H 1.08997 * 109.47295 * 59.99965 * 1 2 3 24 24 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47550 * 299.99818 * 1 2 3 26 26 H 1.08993 * 109.47315 * 240.00209 * 2 1 3 27 27 H 1.08998 * 109.46885 * 119.99688 * 2 1 3 28 28 H 1.09006 * 109.47495 * 59.99905 * 3 2 1 29 29 H 1.08997 * 109.47110 * 300.00149 * 3 2 1 30 30 H 1.09002 * 109.47291 * 60.00252 * 4 3 2 31 31 H 1.08997 * 109.47409 * 300.00194 * 4 3 2 32 32 H 0.97006 * 119.99722 * 359.72424 * 7 5 4 33 33 H 1.09006 * 109.46355 * 295.12188 * 8 7 5 34 34 H 1.08991 * 109.47267 * 55.12455 * 8 7 5 35 35 H 0.97002 * 119.99847 * 121.46211 * 10 9 8 36 36 H 0.97010 * 120.00288 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.48206 * 335.78366 * 19 9 8 38 38 H 1.09003 * 110.48427 * 98.42263 * 19 9 8 39 39 H 1.08999 * 110.75451 * 279.62307 * 20 19 9 40 40 H 1.08998 * 110.75356 * 156.25739 * 20 19 9 41 41 H 1.08993 * 110.48645 * 203.37957 * 21 20 19 42 42 H 1.08995 * 110.48639 * 80.73189 * 21 20 19 43 43 H 1.08999 * 110.03041 * 238.56963 * 22 9 8 44 44 H 1.08998 * 110.03252 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2841 3.7852 -0.0004 7 7 5.3973 3.1097 -0.0052 8 6 5.8856 4.4909 -0.0118 9 6 7.4111 4.4931 0.1057 10 7 7.8225 3.7630 1.3073 11 6 7.3788 4.1655 2.5387 12 1 6.7977 5.0709 2.6337 13 6 7.6760 3.4101 3.6646 14 7 8.3846 2.3070 3.5487 15 14 7.0701 3.9589 5.3442 16 1 5.5866 4.0252 5.3380 17 1 7.5183 2.9873 6.3740 18 1 7.6243 5.3009 5.6561 19 6 7.9347 5.9431 0.1620 20 6 9.2559 5.9015 -0.6453 21 6 8.9190 4.9284 -1.8024 22 6 8.0369 3.8479 -1.1433 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9288 0.8908 32 1 6.0277 2.3724 -0.0045 33 1 5.5923 4.9754 -0.9432 34 1 5.4555 5.0323 0.8307 35 1 8.4092 2.9943 1.2307 36 1 8.5925 1.7792 4.3357 37 1 7.2233 6.6239 -0.3054 38 1 8.1269 6.2396 1.1932 39 1 10.0693 5.5091 -0.0350 40 1 9.5037 6.8900 -1.0318 41 1 9.8294 4.4844 -2.2047 42 1 8.3665 5.4454 -2.5870 43 1 8.6474 2.9921 -0.8553 44 1 7.2539 3.5328 -1.8329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698793473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:39 Heat of formation + Delta-G solvation = -61.196799 kcal Electronic energy + Delta-G solvation = -21326.714475 eV Core-core repulsion = 18277.764286 eV Total energy + Delta-G solvation = -3048.950188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.41524 -38.15442 -35.26644 -33.99163 -33.26363 -30.87805 -30.21748 -28.26541 -27.75540 -25.12368 -23.78993 -22.94799 -21.05620 -20.38817 -19.53204 -18.53099 -16.98848 -16.54490 -15.84969 -15.62713 -15.08371 -14.65210 -14.43703 -14.07640 -13.64076 -13.43615 -13.31683 -13.10242 -12.63173 -12.50998 -12.19349 -11.82830 -11.44952 -11.21747 -11.18639 -11.03283 -10.94278 -10.75273 -10.72905 -10.63305 -10.53102 -10.50711 -10.23674 -10.13852 -9.86229 -9.64108 -9.30930 -8.89645 -8.34002 -7.00954 -5.80779 -3.09521 3.19976 3.42753 3.47272 3.49344 3.82184 4.56928 4.93130 4.99215 5.02013 5.11666 5.13456 5.23816 5.38440 5.40760 5.56146 5.61101 5.69660 5.76094 5.79559 5.85956 5.92367 5.94695 5.95809 5.97202 6.09053 6.12334 6.18940 6.27180 6.31448 6.33657 6.45552 6.45649 6.57436 6.63403 6.77672 6.83695 7.02561 7.17034 7.70529 8.16633 8.38043 8.82428 9.49823 10.03801 10.39261 11.41256 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.006115 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.782781 B = 4577.621327 C = 6140.942838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.102 4.102 4 C -0.141 4.141 5 C 0.508 3.492 6 O -0.561 6.561 7 N -0.701 5.701 8 C 0.120 3.880 9 C 0.189 3.811 10 N -0.710 5.710 11 C -0.232 4.232 12 H 0.068 0.932 13 C -0.008 4.008 14 N -0.933 5.933 15 Si 0.901 3.099 16 H -0.286 1.286 17 H -0.292 1.292 18 H -0.286 1.286 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.120 4.120 22 C -0.125 4.125 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.401 0.599 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.384 0.616 36 H 0.255 0.745 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.434 -2.017 -10.863 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.140 4.140 4 C -0.181 4.181 5 C 0.294 3.706 6 O -0.440 6.440 7 N -0.351 5.351 8 C -0.006 4.006 9 C 0.097 3.903 10 N -0.352 5.352 11 C -0.363 4.363 12 H 0.086 0.914 13 C -0.204 4.204 14 N -0.581 5.581 15 Si 0.732 3.268 16 H -0.213 1.213 17 H -0.218 1.218 18 H -0.213 1.213 19 C -0.172 4.172 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.163 4.163 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.236 0.764 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.219 0.781 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.087 0.913 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.052 -1.309 -10.694 12.357 hybrid contribution 0.244 -0.338 1.133 1.207 sum -5.808 -1.647 -9.561 11.308 Atomic orbital electron populations 1.21759 0.95988 1.01238 1.01909 1.21557 0.95841 0.96989 1.01942 1.21335 0.93234 0.96112 1.03344 1.21670 0.97614 0.94695 1.04166 1.20592 0.82550 0.91320 0.76113 1.90637 1.55602 1.46664 1.51133 1.45765 1.06451 1.09565 1.73288 1.21843 0.96276 0.82463 1.00054 1.20463 0.90346 0.91986 0.87544 1.42535 1.57466 1.34737 1.00457 1.19042 1.27456 1.05404 0.84384 0.91366 1.24664 1.00903 0.97130 0.97724 1.69637 1.43359 1.16248 1.28832 0.86369 0.78497 0.77535 0.84422 1.21322 1.21776 1.21303 1.22828 0.95930 0.97427 1.01058 1.22384 0.98500 0.98032 0.96537 1.22301 0.98902 0.96988 0.97639 1.22427 0.98770 0.98521 0.96632 0.92813 0.92999 0.92700 0.92147 0.91932 0.91319 0.91538 0.89526 0.88884 0.76394 0.93362 0.91656 0.78145 0.93554 0.92949 0.90321 0.91413 0.92748 0.92378 0.92311 0.91324 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.13 -1.32 5.93 -26.73 -0.16 -1.48 16 3 C -0.10 -1.34 4.50 -26.74 -0.12 -1.46 16 4 C -0.14 -1.95 5.70 -27.89 -0.16 -2.11 16 5 C 0.51 9.14 7.83 -10.98 -0.09 9.06 16 6 O -0.56 -11.97 15.98 5.56 0.09 -11.88 16 7 N -0.70 -12.49 5.10 -60.29 -0.31 -12.80 16 8 C 0.12 2.25 3.99 -4.04 -0.02 2.23 16 9 C 0.19 3.43 0.68 -130.70 -0.09 3.34 16 10 N -0.71 -15.96 4.76 -46.19 -0.22 -16.18 16 11 C -0.23 -6.01 8.39 -15.06 -0.13 -6.13 16 12 H 0.07 1.79 7.23 -52.48 -0.38 1.41 16 13 C -0.01 -0.23 5.50 -17.44 -0.10 -0.32 16 14 N -0.93 -26.70 13.06 55.49 0.72 -25.97 16 15 Si 0.90 22.21 29.55 -169.99 -5.02 17.19 16 16 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 C -0.13 -2.29 5.94 -25.07 -0.15 -2.44 16 20 C -0.12 -1.76 6.91 -24.74 -0.17 -1.93 16 21 C -0.12 -1.64 6.83 -25.07 -0.17 -1.81 16 22 C -0.13 -1.91 5.80 -25.61 -0.15 -2.06 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.07 0.90 8.10 -51.93 -0.42 0.48 16 30 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.40 6.81 7.99 -40.82 -0.33 6.48 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 1.42 7.49 -51.93 -0.39 1.03 16 35 H 0.38 9.22 7.28 -40.82 -0.30 8.93 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.05 0.83 7.85 -51.93 -0.41 0.43 16 38 H 0.08 1.56 7.12 -51.93 -0.37 1.19 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.08 7.44 -51.93 -0.39 0.70 16 44 H 0.06 0.86 7.54 -51.93 -0.39 0.47 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -29.61 349.85 -8.58 -38.20 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -8.00 Total: 12.36 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: -1.12 Total: -6.18 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.20 Total: -54.95 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.61 -8.58 -38.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698793473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.001 kcal (2) G-P(sol) polarization free energy of solvation -29.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds