Wall clock time and date at job start Mon Mar 30 2020 00:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47031 * 2 1 4 4 C 1.52993 * 109.47176 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47167 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00119 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00034 * 180.27721 * 5 4 3 8 8 C 1.46500 * 120.00114 * 179.73052 * 7 5 4 9 9 C 1.52998 * 109.47233 * 175.12819 * 8 7 5 10 10 N 1.46504 * 110.01384 * 303.89845 * 9 8 7 11 11 C 1.36935 * 120.00238 * 301.46100 * 10 9 8 12 12 H 1.08004 * 119.99665 * 354.60705 * 11 10 9 13 13 C 1.38803 * 120.00122 * 174.60616 * 11 10 9 14 14 N 1.31615 * 120.00137 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00108 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47222 * 60.00116 * 15 13 11 17 17 H 1.48505 * 109.47433 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47041 * 300.00185 * 15 13 11 19 19 C 1.54268 * 110.03472 * 182.45664 * 9 8 7 20 20 C 1.54883 * 104.19573 * 217.10494 * 19 9 8 21 21 C 1.54893 * 102.75251 * 37.94262 * 20 19 9 22 22 C 1.53881 * 110.03276 * 65.28891 * 9 8 7 23 23 H 1.08997 * 109.47295 * 59.99965 * 1 2 3 24 24 H 1.09005 * 109.47055 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47550 * 299.99818 * 1 2 3 26 26 H 1.08993 * 109.47315 * 240.00209 * 2 1 3 27 27 H 1.08998 * 109.46885 * 119.99688 * 2 1 3 28 28 H 1.09006 * 109.47495 * 59.99905 * 3 2 1 29 29 H 1.08997 * 109.47110 * 300.00149 * 3 2 1 30 30 H 1.09002 * 109.47291 * 60.00252 * 4 3 2 31 31 H 1.08997 * 109.47409 * 300.00194 * 4 3 2 32 32 H 0.97006 * 119.99722 * 359.72424 * 7 5 4 33 33 H 1.09006 * 109.46355 * 295.12188 * 8 7 5 34 34 H 1.08991 * 109.47267 * 55.12455 * 8 7 5 35 35 H 0.97002 * 119.99847 * 121.46211 * 10 9 8 36 36 H 0.97010 * 120.00288 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.48206 * 335.78366 * 19 9 8 38 38 H 1.09003 * 110.48427 * 98.42263 * 19 9 8 39 39 H 1.08999 * 110.75451 * 279.62307 * 20 19 9 40 40 H 1.08998 * 110.75356 * 156.25739 * 20 19 9 41 41 H 1.08993 * 110.48645 * 203.37957 * 21 20 19 42 42 H 1.08995 * 110.48639 * 80.73189 * 21 20 19 43 43 H 1.08999 * 110.03041 * 238.56963 * 22 9 8 44 44 H 1.08998 * 110.03252 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0722 2.8634 0.0000 6 8 3.2841 3.7852 -0.0004 7 7 5.3973 3.1097 -0.0052 8 6 5.8856 4.4909 -0.0118 9 6 7.4111 4.4931 0.1057 10 7 7.8225 3.7630 1.3073 11 6 7.3788 4.1655 2.5387 12 1 6.7977 5.0709 2.6337 13 6 7.6760 3.4101 3.6646 14 7 8.3846 2.3070 3.5487 15 14 7.0701 3.9589 5.3442 16 1 5.5866 4.0252 5.3380 17 1 7.5183 2.9873 6.3740 18 1 7.6243 5.3009 5.6561 19 6 7.9347 5.9431 0.1620 20 6 9.2559 5.9015 -0.6453 21 6 8.9190 4.9284 -1.8024 22 6 8.0369 3.8479 -1.1433 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9563 -0.8899 30 1 3.9337 0.9286 -0.8891 31 1 3.9329 0.9288 0.8908 32 1 6.0277 2.3724 -0.0045 33 1 5.5923 4.9754 -0.9432 34 1 5.4555 5.0323 0.8307 35 1 8.4092 2.9943 1.2307 36 1 8.5925 1.7792 4.3357 37 1 7.2233 6.6239 -0.3054 38 1 8.1269 6.2396 1.1932 39 1 10.0693 5.5091 -0.0350 40 1 9.5037 6.8900 -1.0318 41 1 9.8294 4.4844 -2.2047 42 1 8.3665 5.4454 -2.5870 43 1 8.6474 2.9921 -0.8553 44 1 7.2539 3.5328 -1.8329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698793473.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:38 Heat of formation + Delta-G solvation = -79.263368 kcal Electronic energy + Delta-G solvation = -21327.497900 eV Core-core repulsion = 18277.764286 eV Total energy + Delta-G solvation = -3049.733614 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.87850 -39.58290 -36.26613 -35.52178 -35.06888 -32.49303 -31.46181 -29.56454 -29.30435 -26.52137 -25.39710 -24.33178 -22.06881 -21.63084 -20.92557 -20.03824 -18.92693 -17.96382 -17.25148 -16.89078 -16.53775 -16.14991 -15.78936 -15.58176 -15.18445 -14.82957 -14.49601 -14.36218 -14.04487 -13.81311 -13.32532 -13.22861 -13.18363 -12.92083 -12.47590 -12.38829 -12.18983 -12.18084 -12.05830 -11.87964 -11.85101 -11.72770 -11.58463 -11.44922 -11.37528 -11.31800 -10.95123 -10.70690 -9.87342 -8.94741 -7.91519 -5.16607 1.43485 1.44977 1.49804 1.76297 2.43868 2.56838 3.39618 3.77412 3.82369 3.88384 3.95974 3.99886 4.06559 4.16175 4.37946 4.46329 4.48007 4.59338 4.65637 4.66964 4.74937 4.81160 4.87771 4.95252 4.97332 5.02952 5.05784 5.12003 5.14749 5.19397 5.27569 5.28637 5.39490 5.40636 5.49144 5.51276 5.59288 5.62097 5.71137 6.32534 6.72728 7.38603 7.40119 8.13743 8.38530 9.30623 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.006115 C = 0.004558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.782781 B = 4577.621327 C = 6140.942838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.099 4.099 4 C -0.134 4.134 5 C 0.500 3.500 6 O -0.599 6.599 7 N -0.700 5.700 8 C 0.126 3.874 9 C 0.184 3.816 10 N -0.713 5.713 11 C -0.215 4.215 12 H 0.059 0.941 13 C -0.062 4.062 14 N -0.959 5.959 15 Si 0.948 3.052 16 H -0.292 1.292 17 H -0.294 1.294 18 H -0.283 1.283 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.112 4.112 22 C -0.119 4.119 23 H 0.055 0.945 24 H 0.067 0.933 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.119 0.881 31 H 0.096 0.904 32 H 0.407 0.593 33 H 0.064 0.936 34 H 0.027 0.973 35 H 0.376 0.624 36 H 0.248 0.752 37 H 0.068 0.932 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 -2.519 -12.833 14.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.173 4.173 5 C 0.288 3.712 6 O -0.482 6.482 7 N -0.349 5.349 8 C 0.000 4.000 9 C 0.094 3.906 10 N -0.353 5.353 11 C -0.347 4.347 12 H 0.077 0.923 13 C -0.255 4.255 14 N -0.610 5.610 15 Si 0.779 3.221 16 H -0.219 1.219 17 H -0.220 1.220 18 H -0.210 1.210 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.149 4.149 22 C -0.157 4.157 23 H 0.074 0.926 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.138 0.862 31 H 0.114 0.886 32 H 0.243 0.757 33 H 0.082 0.918 34 H 0.045 0.955 35 H 0.210 0.790 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.048 -1.792 -12.690 14.172 hybrid contribution 0.209 -0.093 1.688 1.704 sum -5.839 -1.885 -11.002 12.598 Atomic orbital electron populations 1.21771 0.95364 1.02183 1.01672 1.21528 0.96396 0.95003 1.02864 1.21307 0.92772 0.97758 1.01875 1.21715 0.97942 0.91857 1.05810 1.21396 0.82128 0.92774 0.74915 1.90616 1.56420 1.48286 1.52835 1.45802 1.06771 1.09304 1.72984 1.21721 0.96241 0.82923 0.99160 1.20722 0.90081 0.92479 0.87353 1.42598 1.57175 1.34735 1.00833 1.19169 1.25465 1.04304 0.85809 0.92269 1.25178 1.02295 0.97832 1.00157 1.69739 1.45172 1.17261 1.28856 0.85599 0.77537 0.77127 0.81804 1.21903 1.22041 1.20979 1.22792 0.97853 0.96866 0.99848 1.22352 0.96295 0.99829 0.96560 1.22294 0.99512 0.95926 0.97217 1.22374 0.99327 0.98751 0.95259 0.92608 0.91442 0.93476 0.90421 0.91741 0.93751 0.92142 0.86242 0.88556 0.75736 0.91816 0.95453 0.79011 0.94254 0.91380 0.93589 0.93220 0.90421 0.90626 0.90223 0.91829 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.91 71.98 0.71 -1.95 16 2 C -0.12 -2.29 5.93 30.59 0.18 -2.10 16 3 C -0.10 -2.51 4.50 30.59 0.14 -2.37 16 4 C -0.13 -3.48 5.70 29.85 0.17 -3.31 16 5 C 0.50 17.76 7.83 87.66 0.69 18.45 16 6 O -0.60 -25.85 15.98 -3.04 -0.05 -25.90 16 7 N -0.70 -24.45 5.10 -463.06 -2.36 -26.82 16 8 C 0.13 4.68 3.99 86.38 0.34 5.03 16 9 C 0.18 6.55 0.68 4.33 0.00 6.55 16 10 N -0.71 -32.16 4.76 -300.06 -1.43 -33.59 16 11 C -0.22 -11.32 8.39 84.03 0.70 -10.62 16 12 H 0.06 3.19 7.23 -2.91 -0.02 3.17 16 13 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 14 N -0.96 -55.60 13.06 21.65 0.28 -55.32 16 15 Si 0.95 46.41 29.55 68.60 2.03 48.44 16 16 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 17 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 18 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 19 C -0.13 -4.52 5.94 31.67 0.19 -4.33 16 20 C -0.11 -3.14 6.91 31.88 0.22 -2.92 16 21 C -0.11 -2.64 6.83 31.67 0.22 -2.42 16 22 C -0.12 -3.34 5.80 31.32 0.18 -3.15 16 23 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.32 8.10 -2.38 -0.02 1.30 16 29 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 30 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.41 13.35 7.99 -92.70 -0.74 12.61 16 33 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 34 H 0.03 1.21 7.49 -2.39 -0.02 1.20 16 35 H 0.38 18.15 7.28 -92.71 -0.67 17.47 16 36 H 0.25 14.25 8.31 -92.70 -0.77 13.48 16 37 H 0.07 2.07 7.85 -2.39 -0.02 2.05 16 38 H 0.05 1.84 7.12 -2.39 -0.02 1.83 16 39 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.06 1.87 7.44 -2.39 -0.02 1.86 16 44 H 0.08 1.93 7.54 -2.39 -0.02 1.91 16 Total: -1.00 -64.78 349.85 2.24 -62.54 By element: Atomic # 1 Polarization: 37.21 SS G_CDS: -0.45 Total: 36.76 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: 4.22 Total: -6.11 kcal Atomic # 7 Polarization: -112.22 SS G_CDS: -3.51 Total: -115.72 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.05 Total: -25.90 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -64.78 2.24 -62.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698793473.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.726 kcal (2) G-P(sol) polarization free energy of solvation -64.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds