Wall clock time and date at job start Mon Mar 30 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.52998 * 109.47317 * 240.00188 * 2 1 3 5 5 C 1.50698 * 109.47246 * 119.99855 * 2 1 3 6 6 O 1.21278 * 119.99711 * 0.02562 * 5 2 1 7 7 N 1.34774 * 119.99715 * 180.02562 * 5 2 1 8 8 C 1.46502 * 119.99927 * 180.02562 * 7 5 2 9 9 H 1.09000 * 110.05717 * 33.57563 * 8 7 5 10 10 C 1.54272 * 110.02966 * 272.16446 * 8 7 5 11 11 C 1.54890 * 104.19504 * 217.10511 * 10 8 7 12 12 C 1.54889 * 102.74947 * 37.93915 * 11 10 8 13 13 C 1.53875 * 110.03623 * 154.99718 * 8 7 5 14 14 H 1.08997 * 110.07249 * 238.59192 * 13 8 7 15 15 C 1.52999 * 110.02828 * 359.97438 * 13 8 7 16 16 N 1.46506 * 109.46684 * 183.62260 * 15 13 8 17 17 C 1.36938 * 119.99589 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00107 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99746 * 359.71693 * 19 17 16 22 22 H 1.48500 * 109.46781 * 90.00854 * 21 19 17 23 23 H 1.48496 * 109.47225 * 210.00413 * 21 19 17 24 24 H 1.48494 * 109.47296 * 330.00424 * 21 19 17 25 25 H 1.09000 * 109.47469 * 300.00166 * 1 2 3 26 26 H 1.09005 * 109.47147 * 59.99884 * 1 2 3 27 27 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47067 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46801 * 299.99984 * 3 2 1 30 30 H 1.08994 * 109.47277 * 60.00093 * 3 2 1 31 31 H 1.08997 * 109.47141 * 300.00017 * 4 2 1 32 32 H 1.09006 * 109.47352 * 59.99410 * 4 2 1 33 33 H 1.08997 * 109.47451 * 179.97438 * 4 2 1 34 34 H 0.97000 * 120.00757 * 359.97438 * 7 5 2 35 35 H 1.08999 * 110.48418 * 98.42514 * 10 8 7 36 36 H 1.08999 * 110.48678 * 335.78217 * 10 8 7 37 37 H 1.09000 * 110.75145 * 279.62524 * 11 10 8 38 38 H 1.08995 * 110.91421 * 156.33207 * 11 10 8 39 39 H 1.08994 * 110.48633 * 203.38121 * 12 11 10 40 40 H 1.08996 * 110.48322 * 80.74135 * 12 11 10 41 41 H 1.09000 * 109.47486 * 63.62195 * 15 13 8 42 42 H 1.09001 * 109.47362 * 303.61472 * 15 13 8 43 43 H 0.96999 * 120.00080 * 359.97438 * 16 15 13 44 44 H 0.97000 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0285 7 7 3.3574 -0.8330 1.4439 8 6 3.8458 -1.5241 2.6398 9 1 3.1665 -2.3333 2.9076 10 6 3.9696 -0.5285 3.8118 11 6 5.2435 -0.9854 4.5653 12 6 6.1892 -1.4070 3.4134 13 6 5.2571 -2.0826 2.3865 14 1 5.2633 -3.1629 2.5307 15 6 5.7081 -1.7418 0.9648 16 7 7.0149 -2.3523 0.7076 17 6 7.6226 -2.1823 -0.5077 18 1 7.1385 -1.5986 -1.2767 19 6 8.8605 -2.7611 -0.7516 20 7 9.4445 -2.5982 -1.9198 21 14 9.7009 -3.7652 0.5808 22 1 9.2902 -5.1873 0.4619 23 1 11.1739 -3.6607 0.4245 24 1 9.3066 -3.2459 1.9149 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 3.9878 -0.4644 0.8054 35 1 3.0974 -0.5946 4.4621 36 1 4.0917 0.4879 3.4377 37 1 5.0248 -1.8327 5.2152 38 1 5.6735 -0.1630 5.1368 39 1 6.9368 -2.1140 3.7730 40 1 6.6698 -0.5324 2.9749 41 1 5.7850 -0.6599 0.8574 42 1 4.9803 -2.1271 0.2506 43 1 7.4498 -2.8762 1.3984 44 1 10.3097 -3.0023 -2.0901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699034237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:56 Heat of formation + Delta-G solvation = -46.068737 kcal Electronic energy + Delta-G solvation = -21718.096531 eV Core-core repulsion = 18669.802345 eV Total energy + Delta-G solvation = -3048.294186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41252 -38.38177 -35.58721 -34.55831 -33.49934 -31.58854 -29.04770 -27.85816 -27.43708 -26.99692 -24.74483 -23.01008 -22.14998 -20.59881 -19.41926 -19.17258 -17.63657 -16.82764 -16.04192 -15.33141 -15.10826 -14.67368 -14.51184 -14.03054 -13.89401 -13.84461 -13.41353 -13.21603 -12.70463 -12.46570 -12.35674 -12.24965 -12.08174 -11.79807 -11.79681 -11.59257 -11.05473 -11.02675 -10.97736 -10.96101 -10.90157 -10.53832 -10.49983 -10.36273 -10.08222 -9.63856 -9.54272 -8.99001 -8.84945 -7.28444 -5.81212 -3.17003 2.74488 3.28676 3.34422 3.37427 3.42784 4.50301 4.55593 4.62396 4.71321 4.71772 4.80778 4.99315 5.16878 5.30357 5.45061 5.46161 5.49948 5.54118 5.56752 5.63723 5.65694 5.72671 5.75010 5.77025 5.78147 5.84528 5.87258 5.98246 5.99174 6.09792 6.13342 6.19340 6.21822 6.30964 6.42770 6.52179 6.64992 6.71120 7.63773 7.93622 8.34054 8.37652 9.16441 9.88987 10.08762 11.37035 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.005503 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.701997 B = 5086.722574 C = 6172.805416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.088 4.088 3 C -0.141 4.141 4 C -0.143 4.143 5 C 0.522 3.478 6 O -0.548 6.548 7 N -0.720 5.720 8 C 0.149 3.851 9 H 0.089 0.911 10 C -0.131 4.131 11 C -0.124 4.124 12 C -0.115 4.115 13 C -0.112 4.112 14 H 0.081 0.919 15 C 0.162 3.838 16 N -0.752 5.752 17 C -0.246 4.246 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.933 5.933 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.276 1.276 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.407 0.593 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.025 0.975 42 H 0.030 0.970 43 H 0.362 0.638 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.403 6.543 8.034 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.091 4.091 3 C -0.198 4.198 4 C -0.201 4.201 5 C 0.309 3.691 6 O -0.426 6.426 7 N -0.373 5.373 8 C 0.044 3.956 9 H 0.107 0.893 10 C -0.170 4.170 11 C -0.162 4.162 12 C -0.153 4.153 13 C -0.132 4.132 14 H 0.099 0.901 15 C 0.035 3.965 16 N -0.398 5.398 17 C -0.376 4.376 18 H 0.107 0.893 19 C -0.190 4.190 20 N -0.581 5.581 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.246 0.754 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.042 0.958 42 H 0.048 0.952 43 H 0.194 0.806 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.910 6.286 8.352 18.209 hybrid contribution 1.121 -0.625 0.514 1.383 sum -13.789 5.661 8.867 17.344 Atomic orbital electron populations 1.21640 0.92191 1.02704 1.01750 1.20821 0.97836 0.96473 0.93971 1.21872 1.01536 0.93775 1.02666 1.21892 1.01924 1.00532 0.95738 1.20582 0.82379 0.79187 0.86996 1.90651 1.55554 1.48986 1.47392 1.46419 1.07142 1.58188 1.25592 1.21595 0.94989 0.94624 0.84431 0.89334 1.22756 0.98047 0.99304 0.96852 1.22477 0.95503 1.00724 0.97499 1.22397 0.97170 1.00863 0.94867 1.22270 0.93111 1.00740 0.97058 0.90084 1.20661 0.88035 0.95766 0.92083 1.42675 1.19134 1.62934 1.15025 1.19034 1.00639 1.27787 0.90157 0.89256 1.24660 0.97329 1.00455 0.96525 1.69694 1.17462 1.49067 1.21851 0.86563 0.79200 0.80744 0.82120 1.21077 1.21709 1.20262 0.92153 0.92170 0.92024 0.91900 0.91348 0.92214 0.92005 0.91373 0.91550 0.75424 0.91488 0.91264 0.91595 0.91563 0.91602 0.90756 0.95777 0.95227 0.80558 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 7.76 37.16 0.29 -1.02 16 2 C -0.09 -0.97 0.87 -155.66 -0.14 -1.10 16 3 C -0.14 -1.31 8.37 37.16 0.31 -1.00 16 4 C -0.14 -1.52 8.37 37.16 0.31 -1.21 16 5 C 0.52 7.25 6.48 -10.99 -0.07 7.18 16 6 O -0.55 -9.31 15.64 5.56 0.09 -9.22 16 7 N -0.72 -9.55 4.20 -52.72 -0.22 -9.77 16 8 C 0.15 2.03 3.23 -66.81 -0.22 1.81 16 9 H 0.09 1.30 7.57 -51.93 -0.39 0.91 16 10 C -0.13 -1.59 6.53 -25.07 -0.16 -1.76 16 11 C -0.12 -1.43 6.91 -24.74 -0.17 -1.60 16 12 C -0.12 -1.60 6.02 -25.07 -0.15 -1.75 16 13 C -0.11 -1.67 2.98 -89.50 -0.27 -1.94 16 14 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.16 2.93 4.18 -4.04 -0.02 2.91 16 16 N -0.75 -17.20 5.24 -59.90 -0.31 -17.52 16 17 C -0.25 -6.78 10.47 -15.06 -0.16 -6.94 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -28.86 13.97 55.49 0.78 -28.08 16 21 Si 0.88 21.77 27.73 -169.99 -4.71 17.06 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.37 6.53 56.52 0.37 -6.00 16 25 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.06 0.58 7.56 -51.93 -0.39 0.19 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.75 7.57 -51.93 -0.39 0.36 16 34 H 0.41 5.23 4.71 -40.82 -0.19 5.04 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.11 7.78 -51.93 -0.40 0.71 16 41 H 0.02 0.43 7.06 -51.93 -0.37 0.07 16 42 H 0.03 0.55 7.51 -51.93 -0.39 0.16 16 43 H 0.36 8.15 5.37 -40.82 -0.22 7.93 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 342.33 15.07 5.16 5.16 Total: -1.00 -31.73 342.33 -7.59 -39.32 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.83 Total: 9.38 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.53 Total: -6.33 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.24 Total: -55.37 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.09 Total: -9.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.73 -7.59 -39.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.744 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds