Wall clock time and date at job start Mon Mar 30 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46879 * 2 1 4 4 C 1.52998 * 109.47317 * 240.00188 * 2 1 3 5 5 C 1.50698 * 109.47246 * 119.99855 * 2 1 3 6 6 O 1.21278 * 119.99711 * 0.02562 * 5 2 1 7 7 N 1.34774 * 119.99715 * 180.02562 * 5 2 1 8 8 C 1.46502 * 119.99927 * 180.02562 * 7 5 2 9 9 H 1.09000 * 110.05717 * 33.57563 * 8 7 5 10 10 C 1.54272 * 110.02966 * 272.16446 * 8 7 5 11 11 C 1.54890 * 104.19504 * 217.10511 * 10 8 7 12 12 C 1.54889 * 102.74947 * 37.93915 * 11 10 8 13 13 C 1.53875 * 110.03623 * 154.99718 * 8 7 5 14 14 H 1.08997 * 110.07249 * 238.59192 * 13 8 7 15 15 C 1.52999 * 110.02828 * 359.97438 * 13 8 7 16 16 N 1.46506 * 109.46684 * 183.62260 * 15 13 8 17 17 C 1.36938 * 119.99589 * 180.02562 * 16 15 13 18 18 H 1.07999 * 120.00325 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99817 * 180.02562 * 17 16 15 20 20 N 1.31611 * 120.00107 * 179.97438 * 19 17 16 21 21 Si 1.86805 * 119.99746 * 359.71693 * 19 17 16 22 22 H 1.48500 * 109.46781 * 90.00854 * 21 19 17 23 23 H 1.48496 * 109.47225 * 210.00413 * 21 19 17 24 24 H 1.48494 * 109.47296 * 330.00424 * 21 19 17 25 25 H 1.09000 * 109.47469 * 300.00166 * 1 2 3 26 26 H 1.09005 * 109.47147 * 59.99884 * 1 2 3 27 27 H 1.09000 * 109.46953 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47067 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46801 * 299.99984 * 3 2 1 30 30 H 1.08994 * 109.47277 * 60.00093 * 3 2 1 31 31 H 1.08997 * 109.47141 * 300.00017 * 4 2 1 32 32 H 1.09006 * 109.47352 * 59.99410 * 4 2 1 33 33 H 1.08997 * 109.47451 * 179.97438 * 4 2 1 34 34 H 0.97000 * 120.00757 * 359.97438 * 7 5 2 35 35 H 1.08999 * 110.48418 * 98.42514 * 10 8 7 36 36 H 1.08999 * 110.48678 * 335.78217 * 10 8 7 37 37 H 1.09000 * 110.75145 * 279.62524 * 11 10 8 38 38 H 1.08995 * 110.91421 * 156.33207 * 11 10 8 39 39 H 1.08994 * 110.48633 * 203.38121 * 12 11 10 40 40 H 1.08996 * 110.48322 * 80.74135 * 12 11 10 41 41 H 1.09000 * 109.47486 * 63.62195 * 15 13 8 42 42 H 1.09001 * 109.47362 * 303.61472 * 15 13 8 43 43 H 0.96999 * 120.00080 * 359.97438 * 16 15 13 44 44 H 0.97000 * 120.00330 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1716 2.0285 7 7 3.3574 -0.8330 1.4439 8 6 3.8458 -1.5241 2.6398 9 1 3.1665 -2.3333 2.9076 10 6 3.9696 -0.5285 3.8118 11 6 5.2435 -0.9854 4.5653 12 6 6.1892 -1.4070 3.4134 13 6 5.2571 -2.0826 2.3865 14 1 5.2633 -3.1629 2.5307 15 6 5.7081 -1.7418 0.9648 16 7 7.0149 -2.3523 0.7076 17 6 7.6226 -2.1823 -0.5077 18 1 7.1385 -1.5986 -1.2767 19 6 8.8605 -2.7611 -0.7516 20 7 9.4445 -2.5982 -1.9198 21 14 9.7009 -3.7652 0.5808 22 1 9.2902 -5.1873 0.4619 23 1 11.1739 -3.6607 0.4245 24 1 9.3066 -3.2459 1.9149 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 -1.7488 -1.2493 32 1 1.6766 -0.2074 -2.1393 33 1 3.1300 -0.7208 -1.2495 34 1 3.9878 -0.4644 0.8054 35 1 3.0974 -0.5946 4.4621 36 1 4.0917 0.4879 3.4377 37 1 5.0248 -1.8327 5.2152 38 1 5.6735 -0.1630 5.1368 39 1 6.9368 -2.1140 3.7730 40 1 6.6698 -0.5324 2.9749 41 1 5.7850 -0.6599 0.8574 42 1 4.9803 -2.1271 0.2506 43 1 7.4498 -2.8762 1.3984 44 1 10.3097 -3.0023 -2.0901 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699034237.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:56 Heat of formation + Delta-G solvation = -66.014042 kcal Electronic energy + Delta-G solvation = -21718.961425 eV Core-core repulsion = 18669.802345 eV Total energy + Delta-G solvation = -3049.159080 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51792 -39.53361 -36.62628 -36.31298 -34.58631 -33.56284 -30.57477 -28.87482 -28.23947 -27.88439 -26.36558 -24.05970 -23.92026 -21.62965 -20.65814 -20.40333 -19.49544 -17.89207 -17.22393 -16.60883 -16.37510 -16.10786 -15.73734 -15.53267 -15.14027 -14.79144 -14.71203 -14.59026 -14.29565 -13.66020 -13.49808 -13.26366 -13.10943 -13.02761 -12.88633 -12.71400 -12.63515 -12.33244 -12.07216 -11.96958 -11.90392 -11.86274 -11.81679 -11.74928 -11.57273 -11.48133 -10.97041 -10.65127 -10.02098 -9.29711 -8.01965 -5.35365 1.38531 1.41303 1.48684 1.64954 2.23044 2.49008 3.29082 3.34257 3.63845 3.66570 3.77567 3.84520 3.93355 3.98888 4.26608 4.34655 4.47128 4.48136 4.52359 4.60263 4.69762 4.70721 4.74924 4.82041 4.87993 4.93352 4.94828 4.97179 5.01715 5.06898 5.19183 5.20850 5.23680 5.31347 5.32120 5.35492 5.46742 5.58307 5.76514 6.21424 6.53877 7.08411 7.24176 7.84128 8.03068 9.19230 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018982 B = 0.005503 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.701997 B = 5086.722574 C = 6172.805416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.141 4.141 5 C 0.518 3.482 6 O -0.582 6.582 7 N -0.717 5.717 8 C 0.151 3.849 9 H 0.078 0.922 10 C -0.125 4.125 11 C -0.113 4.113 12 C -0.115 4.115 13 C -0.105 4.105 14 H 0.080 0.920 15 C 0.162 3.838 16 N -0.754 5.754 17 C -0.233 4.233 18 H 0.060 0.940 19 C -0.061 4.061 20 N -0.982 5.982 21 Si 0.950 3.050 22 H -0.281 1.281 23 H -0.297 1.297 24 H -0.249 1.249 25 H 0.053 0.947 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.409 0.591 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.025 0.975 43 H 0.366 0.634 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.945 7.043 9.668 19.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.088 4.088 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.306 3.694 6 O -0.462 6.462 7 N -0.370 5.370 8 C 0.045 3.955 9 H 0.096 0.904 10 C -0.163 4.163 11 C -0.151 4.151 12 C -0.153 4.153 13 C -0.124 4.124 14 H 0.098 0.902 15 C 0.036 3.964 16 N -0.400 5.400 17 C -0.364 4.364 18 H 0.078 0.922 19 C -0.253 4.253 20 N -0.633 5.633 21 Si 0.777 3.223 22 H -0.208 1.208 23 H -0.224 1.224 24 H -0.173 1.173 25 H 0.072 0.928 26 H 0.103 0.897 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.075 0.925 34 H 0.248 0.752 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.043 0.957 43 H 0.199 0.801 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.484 6.803 10.020 19.658 hybrid contribution 1.198 -0.742 -0.059 1.411 sum -14.286 6.061 9.961 18.440 Atomic orbital electron populations 1.21635 0.91621 1.02103 1.02662 1.20868 0.98260 0.97218 0.92491 1.21877 1.01442 0.92527 1.03724 1.21890 1.01240 1.00270 0.96494 1.21141 0.82093 0.78697 0.87480 1.90631 1.56258 1.50522 1.48792 1.46428 1.07219 1.57832 1.25538 1.21566 0.93771 0.94941 0.85209 0.90366 1.22702 0.98621 0.98847 0.96173 1.22434 0.94183 1.01710 0.96724 1.22381 0.97332 1.00276 0.95338 1.22186 0.94093 1.00960 0.95156 0.90155 1.20793 0.85757 0.95680 0.94196 1.42673 1.20524 1.63262 1.13509 1.19038 1.00338 1.25956 0.91062 0.92152 1.25455 0.98412 1.02485 0.98916 1.69870 1.17994 1.51069 1.24363 0.85481 0.77378 0.78976 0.80424 1.20783 1.22361 1.17299 0.92796 0.89660 0.93402 0.92055 0.89342 0.92140 0.93015 0.89216 0.92549 0.75199 0.91291 0.91055 0.90427 0.89933 0.91563 0.91815 0.95066 0.95717 0.80085 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 7.76 71.98 0.56 -1.84 16 2 C -0.09 -1.78 0.87 -52.93 -0.05 -1.82 16 3 C -0.14 -2.31 8.37 71.98 0.60 -1.71 16 4 C -0.14 -2.86 8.37 71.98 0.60 -2.26 16 5 C 0.52 14.09 6.48 87.66 0.57 14.66 16 6 O -0.58 -19.64 15.64 -3.02 -0.05 -19.69 16 7 N -0.72 -18.50 4.20 -439.09 -1.84 -20.34 16 8 C 0.15 3.91 3.23 45.72 0.15 4.06 16 9 H 0.08 2.23 7.57 -2.39 -0.02 2.21 16 10 C -0.12 -2.77 6.53 31.67 0.21 -2.56 16 11 C -0.11 -2.25 6.91 31.89 0.22 -2.03 16 12 C -0.12 -2.94 6.02 31.67 0.19 -2.75 16 13 C -0.10 -2.95 2.98 -10.07 -0.03 -2.98 16 14 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 15 C 0.16 5.71 4.18 86.38 0.36 6.07 16 16 N -0.75 -33.71 5.24 -343.44 -1.80 -35.50 16 17 C -0.23 -12.89 10.47 84.03 0.88 -12.01 16 18 H 0.06 3.62 8.06 -2.91 -0.02 3.60 16 19 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 20 N -0.98 -61.98 13.97 21.65 0.30 -61.67 16 21 Si 0.95 44.55 27.73 68.60 1.90 46.45 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 24 H -0.25 -10.38 6.53 99.48 0.65 -9.73 16 25 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 26 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 28 H 0.06 1.04 7.56 -2.39 -0.02 1.03 16 29 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.06 1.24 7.57 -2.39 -0.02 1.22 16 34 H 0.41 10.22 4.71 -92.71 -0.44 9.78 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.07 1.56 8.05 -2.39 -0.02 1.54 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.77 7.78 -2.39 -0.02 1.75 16 41 H 0.03 1.08 7.06 -2.39 -0.02 1.07 16 42 H 0.02 0.91 7.51 -2.39 -0.02 0.89 16 43 H 0.37 15.72 5.37 -92.71 -0.50 15.22 16 44 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -68.41 342.33 3.22 -65.19 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.03 Total: 33.80 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: 4.73 Total: -8.23 kcal Atomic # 7 Polarization: -114.18 SS G_CDS: -3.34 Total: -117.52 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.05 Total: -19.69 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 1.90 Total: 46.45 kcal Total: -68.41 3.22 -65.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034237.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.821 kcal (2) G-P(sol) polarization free energy of solvation -68.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds