Wall clock time and date at job start Mon Mar 30 2020 00:32:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.53002 * 109.47303 * 240.00394 * 2 1 3 5 5 C 1.50700 * 109.47257 * 119.99960 * 2 1 3 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 2 1 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 2 1 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 2 9 9 H 1.09005 * 110.02178 * 325.06126 * 8 7 5 10 10 C 1.53872 * 110.03319 * 86.45689 * 8 7 5 11 11 C 1.54268 * 106.59907 * 119.28242 * 10 8 7 12 12 C 1.54889 * 104.19529 * 23.61122 * 11 10 8 13 13 C 1.54271 * 110.03079 * 203.61958 * 8 7 5 14 14 H 1.09002 * 110.48454 * 335.79009 * 13 8 7 15 15 C 1.53008 * 110.48700 * 98.42641 * 13 8 7 16 16 N 1.46493 * 109.47139 * 184.99976 * 15 13 8 17 17 C 1.36944 * 119.99570 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00244 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99507 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00144 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46927 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47249 * 119.99390 * 21 19 17 24 24 H 1.48502 * 109.47072 * 240.00115 * 21 19 17 25 25 H 1.09005 * 109.47124 * 299.99813 * 1 2 3 26 26 H 1.08996 * 109.47365 * 59.99652 * 1 2 3 27 27 H 1.09004 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47453 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47248 * 300.00419 * 3 2 1 30 30 H 1.09005 * 109.46932 * 60.00069 * 3 2 1 31 31 H 1.09002 * 109.46768 * 299.99531 * 4 2 1 32 32 H 1.08996 * 109.46948 * 59.99698 * 4 2 1 33 33 H 1.08996 * 109.46989 * 180.02562 * 4 2 1 34 34 H 0.96995 * 120.00015 * 359.72695 * 7 5 2 35 35 H 1.09002 * 110.03059 * 238.56652 * 10 8 7 36 36 H 1.09000 * 110.03133 * 359.94468 * 10 8 7 37 37 H 1.09003 * 110.48713 * 142.29150 * 11 10 8 38 38 H 1.08992 * 110.48411 * 264.79662 * 11 10 8 39 39 H 1.08997 * 110.75967 * 80.37373 * 12 11 10 40 40 H 1.09003 * 110.74982 * 203.55950 * 12 11 10 41 41 H 1.09000 * 109.46895 * 305.00348 * 15 13 8 42 42 H 1.08997 * 109.46516 * 65.00124 * 15 13 8 43 43 H 0.96998 * 120.00238 * 0.02562 * 16 15 13 44 44 H 0.96997 * 119.99711 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3574 -0.8331 1.4440 8 6 3.8457 -1.5241 2.6398 9 1 3.1782 -1.3328 3.4801 10 6 3.9379 -3.0369 2.3737 11 6 5.4185 -3.4278 2.5605 12 6 5.9885 -2.3252 3.4870 13 6 5.2736 -1.0486 2.9790 14 1 5.7689 -0.6628 2.0879 15 6 5.2366 0.0171 4.0763 16 7 6.5880 0.5379 4.2969 17 6 6.8024 1.5079 5.2395 18 1 5.9754 1.8887 5.8204 19 6 8.0829 2.0018 5.4481 20 7 9.0908 1.5374 4.7405 21 14 8.3756 3.3245 6.7342 22 1 7.0885 3.6727 7.3881 23 1 9.3292 2.8203 7.7548 24 1 8.9415 4.5326 6.0819 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1299 -0.7215 -1.2490 34 1 3.9877 -0.4676 0.8037 35 1 3.3158 -3.5797 3.0854 36 1 3.6184 -3.2569 1.3551 37 1 5.4979 -4.4050 3.0367 38 1 5.9366 -3.4286 1.6016 39 1 5.7314 -2.5239 4.5274 40 1 7.0686 -2.2402 3.3670 41 1 4.5790 0.8308 3.7705 42 1 4.8624 -0.4252 4.9996 43 1 7.3308 0.1956 3.7755 44 1 9.9856 1.8822 4.8866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699034238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:59 Heat of formation + Delta-G solvation = -57.904212 kcal Electronic energy + Delta-G solvation = -21322.671683 eV Core-core repulsion = 18273.864272 eV Total energy + Delta-G solvation = -3048.807411 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32316 -38.21698 -35.62859 -34.47293 -33.38923 -31.39070 -28.59679 -27.83322 -27.54422 -27.05403 -24.56435 -23.04272 -21.98937 -20.44448 -19.94680 -18.90124 -17.20430 -16.58365 -16.45659 -15.25690 -14.88682 -14.73013 -14.42631 -14.05880 -13.66400 -13.54429 -13.42049 -13.16662 -12.83072 -12.54938 -12.41737 -12.21998 -11.97783 -11.88937 -11.67049 -11.33770 -11.12649 -11.09327 -10.93340 -10.83271 -10.75463 -10.43140 -10.36072 -10.28785 -9.96096 -9.71177 -9.54685 -8.89553 -8.86135 -6.90551 -5.76179 -3.04196 2.71968 3.25375 3.43712 3.49823 3.51824 4.48860 4.55685 4.60221 4.69277 4.76973 4.87298 5.06070 5.10517 5.35056 5.40988 5.48309 5.53046 5.57487 5.62855 5.65199 5.67649 5.68582 5.75891 5.81721 5.84171 5.89240 5.95561 6.04463 6.07653 6.12993 6.21828 6.25721 6.32276 6.54106 6.57179 6.64899 6.79908 6.93446 7.60605 7.72001 8.32153 8.43071 9.54502 10.12314 10.47525 11.46869 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.004482 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.047930 B = 6245.696963 C = 7081.559037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.140 4.140 5 C 0.522 3.478 6 O -0.543 6.543 7 N -0.717 5.717 8 C 0.146 3.854 9 H 0.091 0.909 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.111 4.111 13 C -0.101 4.101 14 H 0.078 0.922 15 C 0.161 3.839 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.399 0.601 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.804 -6.905 -12.854 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.199 4.199 4 C -0.197 4.197 5 C 0.307 3.693 6 O -0.420 6.420 7 N -0.368 5.368 8 C 0.041 3.959 9 H 0.109 0.891 10 C -0.169 4.169 11 C -0.163 4.163 12 C -0.148 4.148 13 C -0.120 4.120 14 H 0.097 0.903 15 C 0.034 3.966 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.413 -7.111 -12.126 19.430 hybrid contribution 0.852 0.848 0.238 1.226 sum -12.561 -6.263 -11.888 18.393 Atomic orbital electron populations 1.21645 0.92141 1.02649 1.01947 1.20825 0.97942 0.96588 0.93768 1.21877 1.01561 0.93624 1.02875 1.21859 1.01298 1.00464 0.96091 1.20541 0.82377 0.79191 0.87146 1.90674 1.55415 1.48895 1.47020 1.46204 1.06902 1.58453 1.25242 1.21693 0.95788 0.90895 0.87556 0.89084 1.22533 0.97087 0.95618 1.01659 1.22383 0.95145 0.98869 0.99855 1.22448 1.00359 0.92868 0.99165 1.22419 0.93241 0.96599 0.99786 0.90339 1.20677 0.89041 0.92850 0.94062 1.42333 1.03380 1.46209 1.45551 1.19290 0.93207 1.12359 1.11980 0.91215 1.24719 0.95697 1.00488 1.00082 1.69668 0.99280 1.46018 1.43347 0.86133 0.77656 0.81460 0.81068 1.20571 1.21865 1.21902 0.91921 0.92213 0.92081 0.91853 0.91493 0.91870 0.92179 0.91448 0.92063 0.76649 0.91458 0.91861 0.91887 0.91901 0.91091 0.90753 0.96497 0.96160 0.78289 0.93621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 7.76 37.15 0.29 -0.96 16 2 C -0.09 -0.89 0.87 -155.66 -0.14 -1.02 16 3 C -0.14 -1.31 8.37 37.16 0.31 -1.00 16 4 C -0.14 -1.11 8.37 37.16 0.31 -0.80 16 5 C 0.52 7.02 6.47 -10.98 -0.07 6.95 16 6 O -0.54 -9.33 15.66 5.56 0.09 -9.24 16 7 N -0.72 -9.02 4.78 -52.72 -0.25 -9.28 16 8 C 0.15 2.07 2.79 -66.81 -0.19 1.88 16 9 H 0.09 1.49 7.30 -51.93 -0.38 1.11 16 10 C -0.13 -1.65 6.59 -25.61 -0.17 -1.81 16 11 C -0.12 -1.52 6.83 -25.07 -0.17 -1.69 16 12 C -0.11 -1.66 6.19 -24.74 -0.15 -1.81 16 13 C -0.10 -1.60 2.58 -88.96 -0.23 -1.83 16 14 H 0.08 1.23 7.73 -51.93 -0.40 0.83 16 15 C 0.16 3.28 5.54 -4.04 -0.02 3.26 16 16 N -0.73 -18.40 5.49 -59.91 -0.33 -18.72 16 17 C -0.24 -6.69 9.99 -15.05 -0.15 -6.84 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 21 Si 0.91 22.54 29.55 -169.99 -5.02 17.51 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.06 0.57 7.57 -51.93 -0.39 0.18 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.45 7.56 -51.93 -0.39 0.05 16 34 H 0.40 4.28 7.18 -40.82 -0.29 3.98 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.77 7.92 -51.93 -0.41 0.36 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 1.12 7.97 -51.93 -0.41 0.71 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.43 8.02 -51.93 -0.42 0.01 16 43 H 0.38 10.03 7.64 -40.82 -0.31 9.72 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 350.36 15.07 5.28 5.28 Total: -1.00 -31.99 350.36 -8.01 -40.00 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -8.03 Total: 8.03 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: -0.47 Total: -6.18 kcal Atomic # 7 Polarization: -55.55 SS G_CDS: 0.14 Total: -55.41 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.99 -8.01 -40.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.903 kcal (2) G-P(sol) polarization free energy of solvation -31.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds