Wall clock time and date at job start Mon Mar 30 2020 00:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47195 * 2 1 4 4 C 1.53002 * 109.47303 * 240.00394 * 2 1 3 5 5 C 1.50700 * 109.47257 * 119.99960 * 2 1 3 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 2 1 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 2 1 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 2 9 9 H 1.09005 * 110.02178 * 325.06126 * 8 7 5 10 10 C 1.53872 * 110.03319 * 86.45689 * 8 7 5 11 11 C 1.54268 * 106.59907 * 119.28242 * 10 8 7 12 12 C 1.54889 * 104.19529 * 23.61122 * 11 10 8 13 13 C 1.54271 * 110.03079 * 203.61958 * 8 7 5 14 14 H 1.09002 * 110.48454 * 335.79009 * 13 8 7 15 15 C 1.53008 * 110.48700 * 98.42641 * 13 8 7 16 16 N 1.46493 * 109.47139 * 184.99976 * 15 13 8 17 17 C 1.36944 * 119.99570 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00244 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99507 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00144 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99935 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46927 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47249 * 119.99390 * 21 19 17 24 24 H 1.48502 * 109.47072 * 240.00115 * 21 19 17 25 25 H 1.09005 * 109.47124 * 299.99813 * 1 2 3 26 26 H 1.08996 * 109.47365 * 59.99652 * 1 2 3 27 27 H 1.09004 * 109.47330 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47453 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47248 * 300.00419 * 3 2 1 30 30 H 1.09005 * 109.46932 * 60.00069 * 3 2 1 31 31 H 1.09002 * 109.46768 * 299.99531 * 4 2 1 32 32 H 1.08996 * 109.46948 * 59.99698 * 4 2 1 33 33 H 1.08996 * 109.46989 * 180.02562 * 4 2 1 34 34 H 0.96995 * 120.00015 * 359.72695 * 7 5 2 35 35 H 1.09002 * 110.03059 * 238.56652 * 10 8 7 36 36 H 1.09000 * 110.03133 * 359.94468 * 10 8 7 37 37 H 1.09003 * 110.48713 * 142.29150 * 11 10 8 38 38 H 1.08992 * 110.48411 * 264.79662 * 11 10 8 39 39 H 1.08997 * 110.75967 * 80.37373 * 12 11 10 40 40 H 1.09003 * 110.74982 * 203.55950 * 12 11 10 41 41 H 1.09000 * 109.46895 * 305.00348 * 15 13 8 42 42 H 1.08997 * 109.46516 * 65.00124 * 15 13 8 43 43 H 0.96998 * 120.00238 * 0.02562 * 16 15 13 44 44 H 0.96997 * 119.99711 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3574 -0.8331 1.4440 8 6 3.8457 -1.5241 2.6398 9 1 3.1782 -1.3328 3.4801 10 6 3.9379 -3.0369 2.3737 11 6 5.4185 -3.4278 2.5605 12 6 5.9885 -2.3252 3.4870 13 6 5.2736 -1.0486 2.9790 14 1 5.7689 -0.6628 2.0879 15 6 5.2366 0.0171 4.0763 16 7 6.5880 0.5379 4.2969 17 6 6.8024 1.5079 5.2395 18 1 5.9754 1.8887 5.8204 19 6 8.0829 2.0018 5.4481 20 7 9.0908 1.5374 4.7405 21 14 8.3756 3.3245 6.7342 22 1 7.0885 3.6727 7.3881 23 1 9.3292 2.8203 7.7548 24 1 8.9415 4.5326 6.0819 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1299 -0.7215 -1.2490 34 1 3.9877 -0.4676 0.8037 35 1 3.3158 -3.5797 3.0854 36 1 3.6184 -3.2569 1.3551 37 1 5.4979 -4.4050 3.0367 38 1 5.9366 -3.4286 1.6016 39 1 5.7314 -2.5239 4.5274 40 1 7.0686 -2.2402 3.3670 41 1 4.5790 0.8308 3.7705 42 1 4.8624 -0.4252 4.9996 43 1 7.3308 0.1956 3.7755 44 1 9.9856 1.8822 4.8866 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699034238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:32:58 Heat of formation + Delta-G solvation = -78.264039 kcal Electronic energy + Delta-G solvation = -21323.554552 eV Core-core repulsion = 18273.864272 eV Total energy + Delta-G solvation = -3049.690280 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.40255 -39.42185 -36.58021 -36.31565 -34.55992 -33.30471 -30.23213 -28.89024 -28.20940 -27.89719 -26.36242 -24.37508 -23.47835 -21.65201 -21.09581 -20.04834 -19.12094 -17.69400 -17.61605 -16.64905 -16.29319 -15.87156 -15.82556 -15.22980 -15.07710 -14.85576 -14.65661 -14.51189 -14.33508 -13.51198 -13.29936 -13.17635 -13.08051 -12.99863 -12.83582 -12.72343 -12.61964 -12.43928 -12.14176 -11.97950 -11.89154 -11.86531 -11.85311 -11.62816 -11.60019 -11.43965 -10.95868 -10.63233 -10.02620 -9.01187 -7.96793 -5.25235 1.46597 1.46910 1.57145 1.66458 2.22634 2.54598 3.36329 3.44022 3.64069 3.67441 3.85686 3.90015 3.95296 4.13941 4.29364 4.39356 4.47326 4.54510 4.58234 4.64637 4.71095 4.73060 4.74626 4.83480 4.94900 4.95560 4.96605 5.00097 5.03405 5.10438 5.18135 5.23132 5.25220 5.31872 5.34176 5.36333 5.45348 5.49783 5.64245 6.25869 6.58174 7.27896 7.32948 8.06877 8.33129 9.26583 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.019966 B = 0.004482 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.047930 B = 6245.696963 C = 7081.559037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.136 4.136 5 C 0.516 3.484 6 O -0.586 6.586 7 N -0.710 5.710 8 C 0.152 3.848 9 H 0.065 0.935 10 C -0.122 4.122 11 C -0.111 4.111 12 C -0.111 4.111 13 C -0.089 4.089 14 H 0.085 0.915 15 C 0.163 3.837 16 N -0.738 5.738 17 C -0.249 4.249 18 H 0.069 0.931 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.291 1.291 24 H -0.290 1.290 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.069 0.931 34 H 0.410 0.590 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.009 0.991 42 H 0.012 0.988 43 H 0.377 0.623 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -6.983 -14.393 20.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.193 4.193 5 C 0.304 3.696 6 O -0.466 6.466 7 N -0.361 5.361 8 C 0.046 3.954 9 H 0.083 0.917 10 C -0.161 4.161 11 C -0.148 4.148 12 C -0.149 4.149 13 C -0.109 4.109 14 H 0.103 0.897 15 C 0.036 3.964 16 N -0.381 5.381 17 C -0.381 4.381 18 H 0.087 0.913 19 C -0.261 4.261 20 N -0.616 5.616 21 Si 0.800 3.200 22 H -0.195 1.195 23 H -0.218 1.218 24 H -0.217 1.217 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.088 0.912 34 H 0.247 0.753 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.027 0.973 42 H 0.030 0.970 43 H 0.210 0.790 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.714 -7.189 -13.682 20.663 hybrid contribution 0.889 0.881 0.739 1.454 sum -12.825 -6.307 -12.943 19.282 Atomic orbital electron populations 1.21654 0.92109 1.02173 1.02345 1.20867 0.97950 0.96856 0.92973 1.21893 1.01710 0.92975 1.03226 1.21868 1.01851 1.00176 0.95451 1.21256 0.82041 0.78582 0.87756 1.90654 1.56396 1.50804 1.48733 1.46137 1.07135 1.58071 1.24770 1.21474 0.93930 0.92367 0.87619 0.91661 1.22461 0.97524 0.93864 1.02268 1.22313 0.94322 0.98307 0.99908 1.22404 0.99606 0.93636 0.99279 1.22259 0.94674 0.95612 0.98319 0.89685 1.20754 0.86564 0.93716 0.95346 1.42462 1.04890 1.45841 1.44927 1.19623 0.93349 1.12770 1.12319 0.91333 1.25493 0.95511 1.02847 1.02296 1.69803 0.99471 1.47394 1.44903 0.85121 0.77664 0.78696 0.78559 1.19525 1.21820 1.21719 0.93820 0.89469 0.93018 0.91607 0.89037 0.93645 0.92533 0.89272 0.91211 0.75313 0.91668 0.90691 0.90338 0.90298 0.92343 0.91935 0.97273 0.96990 0.79045 0.93875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 7.76 71.98 0.56 -1.78 16 2 C -0.08 -1.55 0.87 -52.93 -0.05 -1.59 16 3 C -0.14 -2.35 8.37 71.98 0.60 -1.74 16 4 C -0.14 -1.77 8.37 71.98 0.60 -1.17 16 5 C 0.52 13.63 6.47 87.66 0.57 14.20 16 6 O -0.59 -20.44 15.66 -3.03 -0.05 -20.49 16 7 N -0.71 -17.23 4.78 -439.10 -2.10 -19.33 16 8 C 0.15 4.25 2.79 45.72 0.13 4.38 16 9 H 0.07 2.20 7.30 -2.38 -0.02 2.18 16 10 C -0.12 -2.90 6.59 31.32 0.21 -2.70 16 11 C -0.11 -2.46 6.83 31.67 0.22 -2.24 16 12 C -0.11 -3.28 6.19 31.88 0.20 -3.08 16 13 C -0.09 -2.80 2.58 -9.72 -0.03 -2.82 16 14 H 0.08 2.58 7.73 -2.39 -0.02 2.56 16 15 C 0.16 6.74 5.54 86.38 0.48 7.22 16 16 N -0.74 -37.70 5.49 -343.45 -1.89 -39.59 16 17 C -0.25 -14.15 9.99 84.03 0.84 -13.31 16 18 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.50 16 20 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 21 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 25 H 0.04 0.96 8.10 -2.38 -0.02 0.95 16 26 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 28 H 0.06 1.06 7.57 -2.39 -0.02 1.04 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.80 7.56 -2.39 -0.02 0.78 16 34 H 0.41 8.11 7.18 -92.71 -0.67 7.44 16 35 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.07 1.63 7.92 -2.39 -0.02 1.61 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.85 7.97 -2.39 -0.02 1.84 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.01 0.52 8.02 -2.39 -0.02 0.51 16 43 H 0.38 20.02 7.64 -92.71 -0.71 19.32 16 44 H 0.25 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -69.14 350.36 2.66 -66.47 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.41 Total: 30.87 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: 4.79 Total: -8.14 kcal Atomic # 7 Polarization: -113.44 SS G_CDS: -3.70 Total: -117.14 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.05 Total: -20.49 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -69.14 2.66 -66.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.791 kcal (2) G-P(sol) polarization free energy of solvation -69.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds