Wall clock time and date at job start Mon Mar 30 2020 00:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47028 * 240.00136 * 2 1 3 5 5 C 1.50698 * 109.47004 * 119.99815 * 2 1 3 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 2 1 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 2 9 9 H 1.08997 * 110.43622 * 34.57329 * 8 7 5 10 10 C 1.54273 * 110.48808 * 272.03763 * 8 7 5 11 11 C 1.53876 * 106.59791 * 217.71332 * 10 8 7 12 12 C 1.54266 * 106.59878 * 359.97438 * 11 10 8 13 13 C 1.54888 * 110.48835 * 157.12137 * 8 7 5 14 14 H 1.09000 * 110.75836 * 38.30067 * 13 8 7 15 15 C 1.53005 * 110.75243 * 274.93615 * 13 8 7 16 16 N 1.46502 * 109.46812 * 174.99902 * 15 13 8 17 17 C 1.36936 * 119.99819 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00291 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99706 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00333 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46850 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47154 * 119.99915 * 21 19 17 24 24 H 1.48495 * 109.46926 * 240.00123 * 21 19 17 25 25 H 1.09007 * 109.47302 * 299.99719 * 1 2 3 26 26 H 1.08998 * 109.47611 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47038 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47475 * 299.99715 * 3 2 1 30 30 H 1.09001 * 109.47406 * 60.00127 * 3 2 1 31 31 H 1.08995 * 109.47139 * 300.00141 * 4 2 1 32 32 H 1.09003 * 109.47199 * 59.99964 * 4 2 1 33 33 H 1.09001 * 109.46983 * 179.97438 * 4 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 7 5 2 35 35 H 1.09004 * 110.03031 * 336.99137 * 10 8 7 36 36 H 1.08994 * 110.03578 * 98.37663 * 10 8 7 37 37 H 1.09002 * 110.03056 * 119.28433 * 11 10 8 38 38 H 1.08996 * 110.03266 * 240.66324 * 11 10 8 39 39 H 1.09003 * 110.48952 * 142.29189 * 12 11 10 40 40 H 1.09003 * 110.48092 * 264.79964 * 12 11 10 41 41 H 1.08997 * 109.47107 * 294.99472 * 15 13 8 42 42 H 1.08995 * 109.47260 * 54.99795 * 15 13 8 43 43 H 0.96998 * 120.00756 * 359.97438 * 16 15 13 44 44 H 0.97000 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3574 -0.8339 1.4434 8 6 3.8457 -1.5192 2.6426 9 1 3.1789 -2.3387 2.9108 10 6 3.9791 -0.5260 3.8155 11 6 5.2445 -0.9303 4.5921 12 6 5.8356 -2.1555 3.8644 13 6 5.2860 -2.0432 2.4190 14 1 5.8708 -1.3298 1.8384 15 6 5.2649 -3.4123 1.7361 16 7 6.6365 -3.8267 1.4307 17 6 6.8676 -5.0271 0.8135 18 1 6.0388 -5.6684 0.5523 19 6 8.1671 -5.4196 0.5235 20 7 9.1771 -4.6379 0.8414 21 14 8.4825 -7.0574 -0.3178 22 1 7.1890 -7.7432 -0.5665 23 1 9.1765 -6.8247 -1.6098 24 1 9.3326 -7.9065 0.5549 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.9877 -0.4653 0.8049 35 1 4.0836 0.4899 3.4345 36 1 3.1051 -0.5935 4.4633 37 1 5.9630 -0.1106 4.5880 38 1 4.9851 -1.1938 5.6174 39 1 6.9246 -2.1099 3.8634 40 1 5.4937 -3.0786 4.3325 41 1 4.8042 -4.1428 2.4010 42 1 4.6903 -3.3486 0.8121 43 1 7.3809 -3.2507 1.6649 44 1 10.0852 -4.9123 0.6392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699034240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:04 Heat of formation + Delta-G solvation = -59.058181 kcal Electronic energy + Delta-G solvation = -21336.574579 eV Core-core repulsion = 18287.717128 eV Total energy + Delta-G solvation = -3048.857451 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.28894 -38.18856 -35.61842 -34.45399 -33.45220 -31.39717 -28.59405 -27.82575 -27.52815 -27.03593 -24.57321 -23.01244 -22.02969 -20.29689 -20.02540 -18.91595 -17.20605 -16.59553 -16.49547 -15.18948 -14.89243 -14.67453 -14.45469 -14.04273 -13.70372 -13.56446 -13.23479 -13.18664 -12.87099 -12.53809 -12.40951 -12.23750 -12.03466 -11.87501 -11.80908 -11.27707 -11.11477 -11.08683 -10.94253 -10.89838 -10.73385 -10.43487 -10.30663 -10.22548 -9.96113 -9.70702 -9.55844 -8.87759 -8.86625 -6.90738 -5.76338 -3.04386 2.72386 3.25460 3.43419 3.49536 3.51520 4.48954 4.56122 4.61139 4.70347 4.78760 4.87043 5.04530 5.11807 5.36574 5.42369 5.47339 5.54780 5.56804 5.63728 5.65259 5.66480 5.69732 5.76868 5.78816 5.83957 5.91115 5.96796 6.06139 6.09333 6.13901 6.20936 6.28805 6.33712 6.51607 6.57202 6.65090 6.79706 6.93067 7.61597 7.71652 8.32532 8.42863 9.54286 10.12235 10.47388 11.46694 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.004661 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.761232 B = 6006.464540 C = 6993.624750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.088 4.088 3 C -0.140 4.140 4 C -0.142 4.142 5 C 0.522 3.478 6 O -0.544 6.544 7 N -0.716 5.716 8 C 0.146 3.854 9 H 0.093 0.907 10 C -0.131 4.131 11 C -0.123 4.123 12 C -0.111 4.111 13 C -0.102 4.102 14 H 0.080 0.920 15 C 0.162 3.838 16 N -0.731 5.731 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.020 0.980 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.146 13.628 0.560 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.091 4.091 3 C -0.197 4.197 4 C -0.200 4.200 5 C 0.308 3.692 6 O -0.421 6.421 7 N -0.367 5.367 8 C 0.041 3.959 9 H 0.111 0.889 10 C -0.170 4.170 11 C -0.161 4.161 12 C -0.149 4.149 13 C -0.121 4.121 14 H 0.098 0.902 15 C 0.034 3.966 16 N -0.375 5.375 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.038 0.962 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.750 13.119 1.062 19.034 hybrid contribution 0.887 -0.554 -0.708 1.263 sum -12.863 12.565 0.354 17.985 Atomic orbital electron populations 1.21646 0.92149 1.02829 1.01750 1.20822 0.97927 0.96364 0.93995 1.21860 1.01323 0.93869 1.02668 1.21877 1.01622 1.00721 0.95735 1.20538 0.82342 0.79277 0.86996 1.90672 1.55413 1.48701 1.47304 1.46075 1.06930 1.58456 1.25193 1.21900 0.95638 0.94441 0.83969 0.88864 1.22502 0.98268 0.99083 0.97169 1.22119 0.96508 0.98464 0.98987 1.22313 1.00987 0.97589 0.94023 1.22576 0.93669 0.98657 0.97184 0.90218 1.20633 0.88744 0.91297 0.95882 1.42337 1.01439 1.21738 1.71973 1.19282 0.92057 0.95343 1.30156 0.91236 1.24717 0.95559 0.98642 1.02057 1.69665 0.98149 1.37310 1.53172 0.86135 0.77702 0.83607 0.78893 1.20579 1.21894 1.21872 0.92098 0.92210 0.91924 0.92047 0.91451 0.92178 0.91872 0.91492 0.91797 0.76533 0.91831 0.91698 0.91974 0.92007 0.90812 0.91231 0.96236 0.96443 0.78293 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.76 37.16 0.29 -0.97 16 2 C -0.09 -0.90 0.87 -155.66 -0.14 -1.03 16 3 C -0.14 -1.13 8.37 37.16 0.31 -0.82 16 4 C -0.14 -1.34 8.37 37.16 0.31 -1.03 16 5 C 0.52 7.07 6.48 -10.99 -0.07 7.00 16 6 O -0.54 -9.35 15.66 5.55 0.09 -9.26 16 7 N -0.72 -9.10 4.89 -52.20 -0.26 -9.36 16 8 C 0.15 2.06 2.63 -66.27 -0.17 1.89 16 9 H 0.09 1.52 7.52 -51.93 -0.39 1.13 16 10 C -0.13 -1.65 6.54 -25.61 -0.17 -1.82 16 11 C -0.12 -1.51 6.80 -25.61 -0.17 -1.69 16 12 C -0.11 -1.67 6.21 -24.99 -0.16 -1.83 16 13 C -0.10 -1.60 2.51 -88.54 -0.22 -1.82 16 14 H 0.08 1.25 8.02 -51.93 -0.42 0.83 16 15 C 0.16 3.27 5.70 -4.04 -0.02 3.25 16 16 N -0.73 -18.34 5.53 -59.91 -0.33 -18.67 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.70 8.10 -51.93 -0.42 0.28 16 28 H 0.06 0.46 7.57 -51.93 -0.39 0.07 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.60 7.56 -51.93 -0.39 0.20 16 34 H 0.40 4.40 7.38 -40.82 -0.30 4.10 16 35 H 0.06 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.10 7.94 -51.93 -0.41 0.69 16 41 H 0.02 0.41 7.99 -51.93 -0.42 0.00 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 10.02 7.67 -40.82 -0.31 9.71 16 44 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 351.20 15.07 5.29 5.29 Total: -1.00 -31.87 351.20 -8.03 -39.90 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.07 Total: 8.19 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -0.46 Total: -6.19 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.14 Total: -55.40 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: 0.09 Total: -9.26 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.87 -8.03 -39.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.155 kcal (2) G-P(sol) polarization free energy of solvation -31.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds