Wall clock time and date at job start Mon Mar 30 2020 00:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46768 * 2 1 4 4 C 1.52995 * 109.47028 * 240.00136 * 2 1 3 5 5 C 1.50698 * 109.47004 * 119.99815 * 2 1 3 6 6 O 1.21283 * 120.00472 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99538 * 179.97438 * 5 2 1 8 8 C 1.46499 * 119.99665 * 179.72653 * 7 5 2 9 9 H 1.08997 * 110.43622 * 34.57329 * 8 7 5 10 10 C 1.54273 * 110.48808 * 272.03763 * 8 7 5 11 11 C 1.53876 * 106.59791 * 217.71332 * 10 8 7 12 12 C 1.54266 * 106.59878 * 359.97438 * 11 10 8 13 13 C 1.54888 * 110.48835 * 157.12137 * 8 7 5 14 14 H 1.09000 * 110.75836 * 38.30067 * 13 8 7 15 15 C 1.53005 * 110.75243 * 274.93615 * 13 8 7 16 16 N 1.46502 * 109.46812 * 174.99902 * 15 13 8 17 17 C 1.36936 * 119.99819 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99993 * 359.97438 * 17 16 15 19 19 C 1.38814 * 120.00291 * 179.97438 * 17 16 15 20 20 N 1.31618 * 119.99706 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00333 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46850 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47154 * 119.99915 * 21 19 17 24 24 H 1.48495 * 109.46926 * 240.00123 * 21 19 17 25 25 H 1.09007 * 109.47302 * 299.99719 * 1 2 3 26 26 H 1.08998 * 109.47611 * 59.99921 * 1 2 3 27 27 H 1.09000 * 109.47527 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47038 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47475 * 299.99715 * 3 2 1 30 30 H 1.09001 * 109.47406 * 60.00127 * 3 2 1 31 31 H 1.08995 * 109.47139 * 300.00141 * 4 2 1 32 32 H 1.09003 * 109.47199 * 59.99964 * 4 2 1 33 33 H 1.09001 * 109.46983 * 179.97438 * 4 2 1 34 34 H 0.97001 * 120.00485 * 0.02562 * 7 5 2 35 35 H 1.09004 * 110.03031 * 336.99137 * 10 8 7 36 36 H 1.08994 * 110.03578 * 98.37663 * 10 8 7 37 37 H 1.09002 * 110.03056 * 119.28433 * 11 10 8 38 38 H 1.08996 * 110.03266 * 240.66324 * 11 10 8 39 39 H 1.09003 * 110.48952 * 142.29189 * 12 11 10 40 40 H 1.09003 * 110.48092 * 264.79964 * 12 11 10 41 41 H 1.08997 * 109.47107 * 294.99472 * 15 13 8 42 42 H 1.08995 * 109.47260 * 54.99795 * 15 13 8 43 43 H 0.96998 * 120.00756 * 359.97438 * 16 15 13 44 44 H 0.97000 * 120.00260 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 8 1.2442 -1.1717 2.0286 7 7 3.3574 -0.8339 1.4434 8 6 3.8457 -1.5192 2.6426 9 1 3.1789 -2.3387 2.9108 10 6 3.9791 -0.5260 3.8155 11 6 5.2445 -0.9303 4.5921 12 6 5.8356 -2.1555 3.8644 13 6 5.2860 -2.0432 2.4190 14 1 5.8708 -1.3298 1.8384 15 6 5.2649 -3.4123 1.7361 16 7 6.6365 -3.8267 1.4307 17 6 6.8676 -5.0271 0.8135 18 1 6.0388 -5.6684 0.5523 19 6 8.1671 -5.4196 0.5235 20 7 9.1771 -4.6379 0.8414 21 14 8.4825 -7.0574 -0.3178 22 1 7.1890 -7.7432 -0.5665 23 1 9.1765 -6.8247 -1.6098 24 1 9.3326 -7.9065 0.5549 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 1.6766 -1.7488 -1.2493 32 1 1.6766 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 3.9877 -0.4653 0.8049 35 1 4.0836 0.4899 3.4345 36 1 3.1051 -0.5935 4.4633 37 1 5.9630 -0.1106 4.5880 38 1 4.9851 -1.1938 5.6174 39 1 6.9246 -2.1099 3.8634 40 1 5.4937 -3.0786 4.3325 41 1 4.8042 -4.1428 2.4010 42 1 4.6903 -3.3486 0.8121 43 1 7.3809 -3.2507 1.6649 44 1 10.0852 -4.9123 0.6392 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699034240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:33:03 Heat of formation + Delta-G solvation = -79.320332 kcal Electronic energy + Delta-G solvation = -21337.453212 eV Core-core repulsion = 18287.717128 eV Total energy + Delta-G solvation = -3049.736084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.37108 -39.39670 -36.57720 -36.30142 -34.60893 -33.31518 -30.22387 -28.88246 -28.20943 -27.88956 -26.36954 -24.33060 -23.53269 -21.56576 -21.11558 -20.06428 -19.13606 -17.70040 -17.63427 -16.67823 -16.22266 -15.90032 -15.79296 -15.16702 -15.08522 -14.86455 -14.66123 -14.52748 -14.25682 -13.57419 -13.30187 -13.17501 -13.12849 -13.04512 -12.84263 -12.78676 -12.61935 -12.36816 -12.13361 -12.06718 -11.90484 -11.87662 -11.85314 -11.62105 -11.58749 -11.30941 -10.95386 -10.64426 -10.01585 -9.00573 -7.96299 -5.24683 1.46715 1.47277 1.57337 1.66218 2.22357 2.54795 3.36724 3.43888 3.64327 3.67053 3.85678 3.89117 3.95391 4.15335 4.28712 4.40765 4.47267 4.51913 4.56368 4.66191 4.70354 4.72620 4.73704 4.83654 4.93753 4.95282 4.96164 5.02040 5.03389 5.12702 5.20081 5.22521 5.27350 5.28899 5.34209 5.36367 5.45735 5.50276 5.62794 6.26282 6.58105 7.27437 7.33368 8.07615 8.33514 9.27105 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.018715 B = 0.004661 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.761232 B = 6006.464540 C = 6993.624750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.083 4.083 3 C -0.136 4.136 4 C -0.141 4.141 5 C 0.517 3.483 6 O -0.586 6.586 7 N -0.710 5.710 8 C 0.152 3.848 9 H 0.069 0.931 10 C -0.123 4.123 11 C -0.112 4.112 12 C -0.112 4.112 13 C -0.090 4.090 14 H 0.086 0.914 15 C 0.164 3.836 16 N -0.739 5.739 17 C -0.248 4.248 18 H 0.069 0.931 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.270 1.270 23 H -0.290 1.290 24 H -0.292 1.292 25 H 0.051 0.949 26 H 0.086 0.914 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.410 0.590 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.009 0.991 42 H 0.014 0.986 43 H 0.377 0.623 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 14.951 -0.171 20.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.086 4.086 3 C -0.194 4.194 4 C -0.198 4.198 5 C 0.305 3.695 6 O -0.466 6.466 7 N -0.360 5.360 8 C 0.046 3.954 9 H 0.087 0.913 10 C -0.161 4.161 11 C -0.150 4.150 12 C -0.150 4.150 13 C -0.110 4.110 14 H 0.105 0.895 15 C 0.037 3.963 16 N -0.381 5.381 17 C -0.379 4.379 18 H 0.087 0.913 19 C -0.262 4.262 20 N -0.616 5.616 21 Si 0.799 3.201 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.219 1.219 25 H 0.070 0.930 26 H 0.105 0.895 27 H 0.062 0.938 28 H 0.087 0.913 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.247 0.753 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.027 0.973 42 H 0.032 0.968 43 H 0.209 0.791 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.140 14.455 0.320 20.224 hybrid contribution 0.952 -0.990 -0.476 1.453 sum -13.188 13.466 -0.156 18.849 Atomic orbital electron populations 1.21654 0.92057 1.01913 1.02635 1.20864 0.97981 0.97467 0.92336 1.21868 1.01822 0.92060 1.03612 1.21891 1.01667 0.99958 0.96293 1.21240 0.82008 0.78691 0.87584 1.90652 1.56367 1.50538 1.49012 1.46027 1.07155 1.57916 1.24939 1.21692 0.93780 0.94567 0.85371 0.91286 1.22429 0.98299 0.99181 0.96219 1.22058 0.96409 0.97410 0.99105 1.22274 1.00291 0.98617 0.93791 1.22414 0.95097 0.96123 0.97320 0.89548 1.20706 0.86222 0.93555 0.95767 1.42471 1.03019 1.20959 1.71699 1.19616 0.92214 0.96312 1.29803 0.91307 1.25489 0.95394 1.02051 1.03240 1.69802 0.98301 1.39000 1.54510 0.85125 0.77700 0.79640 0.77602 1.19491 1.21702 1.21923 0.92995 0.89485 0.93775 0.91282 0.89287 0.92489 0.93595 0.89049 0.91703 0.75311 0.90304 0.91890 0.90321 0.90789 0.92000 0.92534 0.97267 0.96821 0.79092 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.35 7.76 71.98 0.56 -1.79 16 2 C -0.08 -1.57 0.87 -52.93 -0.05 -1.62 16 3 C -0.14 -1.83 8.37 71.98 0.60 -1.22 16 4 C -0.14 -2.41 8.37 71.98 0.60 -1.81 16 5 C 0.52 13.73 6.48 87.66 0.57 14.30 16 6 O -0.59 -20.39 15.66 -3.04 -0.05 -20.44 16 7 N -0.71 -17.41 4.89 -437.45 -2.14 -19.55 16 8 C 0.15 4.23 2.63 46.07 0.12 4.35 16 9 H 0.07 2.29 7.52 -2.39 -0.02 2.28 16 10 C -0.12 -2.87 6.54 31.32 0.20 -2.67 16 11 C -0.11 -2.54 6.80 31.32 0.21 -2.33 16 12 C -0.11 -3.32 6.21 31.72 0.20 -3.13 16 13 C -0.09 -2.82 2.51 -9.45 -0.02 -2.85 16 14 H 0.09 2.62 8.02 -2.39 -0.02 2.60 16 15 C 0.16 6.72 5.70 86.38 0.49 7.21 16 16 N -0.74 -37.52 5.53 -343.45 -1.90 -39.41 16 17 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 18 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 19 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 20 N -0.97 -58.47 13.06 21.65 0.28 -58.19 16 21 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 26 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 28 H 0.07 0.83 7.57 -2.39 -0.02 0.81 16 29 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.09 7.56 -2.39 -0.02 1.08 16 34 H 0.41 8.38 7.38 -92.71 -0.68 7.70 16 35 H 0.08 1.64 8.04 -2.38 -0.02 1.62 16 36 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 39 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.06 1.81 7.94 -2.39 -0.02 1.79 16 41 H 0.01 0.40 7.99 -2.39 -0.02 0.39 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.38 19.97 7.67 -92.71 -0.71 19.26 16 44 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -68.68 351.20 2.59 -66.09 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: -0.43 Total: 31.44 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: 4.80 Total: -8.22 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -3.75 Total: -117.15 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -68.68 2.59 -66.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699034240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.231 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds