Wall clock time and date at job start Mon Mar 30 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47364 * 54.99289 * 4 3 2 6 6 C 1.53010 * 109.46901 * 294.99927 * 4 3 2 7 7 C 1.50700 * 109.47382 * 175.00347 * 4 3 2 8 8 O 1.21279 * 120.00179 * 359.97438 * 7 4 3 9 9 N 1.34772 * 119.99681 * 179.97438 * 7 4 3 10 10 C 1.46510 * 119.99614 * 179.97438 * 9 7 4 11 11 H 1.08994 * 109.47163 * 324.99646 * 10 9 7 12 12 C 1.52998 * 109.46996 * 204.99865 * 10 9 7 13 13 N 1.46506 * 109.47237 * 54.99974 * 12 10 9 14 14 C 1.36939 * 120.00073 * 179.72302 * 13 12 10 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00455 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 89.99498 * 18 16 14 20 20 H 1.48496 * 109.47434 * 209.99930 * 18 16 14 21 21 H 1.48507 * 109.46769 * 330.00032 * 18 16 14 22 22 C 1.52999 * 109.46806 * 85.00215 * 10 9 7 23 23 C 1.52989 * 117.50173 * 8.74511 * 22 10 9 24 24 C 1.52997 * 117.50017 * 300.08213 * 22 10 9 25 25 H 1.09003 * 109.47039 * 60.00277 * 1 2 3 26 26 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47366 * 299.99531 * 1 2 3 28 28 H 1.09000 * 109.46800 * 239.99810 * 2 1 3 29 29 H 1.08998 * 109.47112 * 120.00203 * 2 1 3 30 30 H 1.09000 * 109.47534 * 60.00260 * 3 2 1 31 31 H 1.08998 * 109.47388 * 300.00034 * 3 2 1 32 32 H 1.08994 * 109.47182 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47077 * 300.00025 * 6 4 3 34 34 H 1.08997 * 109.46873 * 59.99848 * 6 4 3 35 35 H 0.96996 * 120.00766 * 359.97438 * 9 7 4 36 36 H 1.09001 * 109.47671 * 295.00315 * 12 10 9 37 37 H 1.08998 * 109.47454 * 175.00312 * 12 10 9 38 38 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 39 39 H 0.97000 * 120.00679 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54930 * 154.41840 * 22 10 9 41 41 H 1.09003 * 117.50242 * 359.97438 * 23 22 10 42 42 H 1.09008 * 117.50262 * 145.02356 * 23 22 10 43 43 H 1.08996 * 117.50257 * 214.98869 * 24 22 10 44 44 H 1.09008 * 117.49446 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0805 0.8327 1.3065 7 6 4.0722 2.8579 -0.1244 8 8 3.2841 3.7763 -0.2047 9 7 5.3973 3.1033 -0.1458 10 6 5.8856 4.4793 -0.2667 11 1 5.2131 5.0484 -0.9085 12 6 7.2882 4.4709 -0.8778 13 7 7.2619 3.7464 -2.1509 14 6 8.4091 3.6131 -2.8867 15 1 9.3334 4.0417 -2.5282 16 6 8.3841 2.9272 -4.0931 17 7 7.2578 2.4043 -4.5297 18 14 9.9491 2.7447 -5.0965 19 1 10.6558 1.5034 -4.6901 20 1 9.6061 2.6692 -6.5394 21 1 10.8297 3.9164 -4.8576 22 6 5.9369 5.1257 1.1191 23 6 5.6962 4.2218 2.3297 24 6 4.6253 5.2276 1.9001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 5.1705 0.8323 1.3059 33 1 3.7175 1.4220 2.1485 34 1 3.7172 -0.1910 1.3960 35 1 6.0277 2.3689 -0.0812 36 1 7.9796 3.9786 -0.1939 37 1 7.6158 5.4961 -1.0499 38 1 6.4309 3.3649 -2.4748 39 1 7.2401 1.9253 -5.3730 40 1 6.6545 5.9383 1.2325 41 1 5.5008 3.1665 2.1389 42 1 6.2551 4.4398 3.2398 43 1 4.4801 6.1070 2.5276 44 1 3.7256 4.8344 1.4265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699584261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:49 Heat of formation + Delta-G solvation = -23.706191 kcal Electronic energy + Delta-G solvation = -21424.322527 eV Core-core repulsion = 18376.998054 eV Total energy + Delta-G solvation = -3047.324474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.12586 -37.45957 -35.69664 -34.87467 -33.30876 -32.03894 -30.89598 -28.09792 -26.61215 -24.29486 -23.72502 -22.21345 -21.49244 -21.21332 -19.73381 -19.50651 -17.26873 -16.71966 -15.95164 -15.81734 -15.39893 -14.71454 -14.32743 -14.02344 -13.96909 -13.49957 -13.21942 -13.05024 -12.81939 -12.44561 -12.31280 -12.12095 -11.86481 -11.60168 -11.35640 -11.22174 -11.12892 -10.91632 -10.88817 -10.83109 -10.76459 -10.50360 -10.21335 -10.07378 -9.79478 -9.55325 -9.31668 -8.92058 -8.56258 -6.96949 -5.79297 -3.09010 2.98731 3.41381 3.46958 3.48730 3.52570 4.09780 4.55267 4.77559 4.81376 4.91637 4.95892 5.14879 5.22108 5.23739 5.24277 5.31835 5.51548 5.53408 5.61951 5.64405 5.75607 5.81365 5.82384 5.85101 5.88232 5.97938 6.02707 6.04961 6.09802 6.11875 6.25542 6.33623 6.35288 6.42136 6.51786 6.56140 6.72268 6.99994 7.67010 7.93350 8.38668 8.61843 9.50534 10.06504 10.42126 11.43099 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005312 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.360571 B = 5269.624940 C = 6611.012862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.098 4.098 4 C -0.114 4.114 5 H 0.100 0.900 6 C -0.144 4.144 7 C 0.520 3.480 8 O -0.545 6.545 9 N -0.708 5.708 10 C 0.167 3.833 11 H 0.089 0.911 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.242 4.242 15 H 0.071 0.929 16 C -0.012 4.012 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.290 1.290 20 H -0.291 1.291 21 H -0.282 1.282 22 C -0.160 4.160 23 C -0.179 4.179 24 C -0.187 4.187 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.404 0.596 36 H 0.026 0.974 37 H 0.033 0.967 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.540 -2.996 13.886 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.135 4.135 5 H 0.118 0.882 6 C -0.202 4.202 7 C 0.307 3.693 8 O -0.424 6.424 9 N -0.358 5.358 10 C 0.062 3.938 11 H 0.107 0.893 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.373 4.373 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.580 5.580 18 Si 0.738 3.262 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.208 1.208 22 C -0.180 4.180 23 C -0.216 4.216 24 C -0.224 4.224 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.239 0.761 36 H 0.043 0.957 37 H 0.050 0.950 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.101 0.899 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -8.917 -2.314 13.755 16.555 hybrid contribution 1.064 -0.532 -0.738 1.400 sum -7.852 -2.846 13.018 15.467 Atomic orbital electron populations 1.21758 0.95986 1.01265 1.01877 1.21605 0.95796 0.96945 1.02070 1.21392 0.92484 0.96350 1.03334 1.21348 0.97619 0.94038 1.00543 0.88222 1.21833 1.01225 1.01184 0.95926 1.20554 0.82410 0.91056 0.75328 1.90593 1.55479 1.46286 1.50009 1.46001 1.06864 1.09484 1.73476 1.20726 0.97108 0.82182 0.93749 0.89258 1.20906 0.91999 0.96395 0.88707 1.42352 1.10215 1.65299 1.19761 1.19219 0.88663 1.28905 1.00544 0.91147 1.24738 0.97002 1.00917 0.98111 1.69666 1.24786 1.41275 1.22259 0.86191 0.82597 0.77778 0.79605 1.21724 1.21779 1.20757 1.22690 1.00486 1.02123 0.92668 1.22915 1.03586 0.97292 0.97796 1.23331 0.94773 1.00947 1.03357 0.92680 0.92994 0.92868 0.91888 0.91906 0.91591 0.91077 0.92123 0.92264 0.91421 0.76093 0.95666 0.94952 0.78004 0.93493 0.87440 0.88829 0.89672 0.89906 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.25 5.69 -26.73 -0.15 -1.40 16 3 C -0.10 -1.18 4.03 -26.74 -0.11 -1.29 16 4 C -0.11 -1.44 2.73 -91.77 -0.25 -1.70 16 5 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 6 C -0.14 -1.46 8.65 37.16 0.32 -1.14 16 7 C 0.52 8.25 5.99 -10.99 -0.07 8.18 16 8 O -0.55 -10.17 12.95 5.56 0.07 -10.10 16 9 N -0.71 -11.19 2.95 -53.80 -0.16 -11.35 16 10 C 0.17 2.85 2.59 -67.93 -0.18 2.68 16 11 H 0.09 1.75 7.58 -51.93 -0.39 1.36 16 12 C 0.15 2.90 5.80 -4.04 -0.02 2.87 16 13 N -0.73 -18.07 5.43 -59.91 -0.33 -18.40 16 14 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 15 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 16 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 17 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 18 Si 0.91 22.17 29.55 -169.99 -5.02 17.15 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 C -0.16 -2.32 5.70 -90.63 -0.52 -2.83 16 23 C -0.18 -2.31 9.74 -26.70 -0.26 -2.57 16 24 C -0.19 -2.64 9.82 -26.70 -0.26 -2.90 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.56 6.57 -51.93 -0.34 0.21 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.99 7.95 -51.93 -0.41 0.57 16 32 H 0.06 0.60 7.56 -51.93 -0.39 0.20 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.59 6.57 -51.93 -0.34 0.24 16 35 H 0.40 6.17 8.02 -40.82 -0.33 5.84 16 36 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.39 10.17 7.33 -40.82 -0.30 9.87 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 40 H 0.11 1.45 8.11 -51.93 -0.42 1.03 16 41 H 0.09 1.20 6.48 -51.93 -0.34 0.87 16 42 H 0.08 0.98 8.14 -51.92 -0.42 0.55 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.12 1.90 5.01 -51.92 -0.26 1.64 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -30.52 348.30 -8.56 -39.08 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -7.72 Total: 13.86 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.37 Total: -8.34 kcal Atomic # 7 Polarization: -57.14 SS G_CDS: 0.24 Total: -56.90 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.07 Total: -10.10 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.52 -8.56 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699584261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.371 kcal (2) G-P(sol) polarization free energy of solvation -30.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds