Wall clock time and date at job start Mon Mar 30 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.46930 * 2 1 4 4 C 1.53001 * 109.47250 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47364 * 54.99289 * 4 3 2 6 6 C 1.53010 * 109.46901 * 294.99927 * 4 3 2 7 7 C 1.50700 * 109.47382 * 175.00347 * 4 3 2 8 8 O 1.21279 * 120.00179 * 359.97438 * 7 4 3 9 9 N 1.34772 * 119.99681 * 179.97438 * 7 4 3 10 10 C 1.46510 * 119.99614 * 179.97438 * 9 7 4 11 11 H 1.08994 * 109.47163 * 324.99646 * 10 9 7 12 12 C 1.52998 * 109.46996 * 204.99865 * 10 9 7 13 13 N 1.46506 * 109.47237 * 54.99974 * 12 10 9 14 14 C 1.36939 * 120.00073 * 179.72302 * 13 12 10 15 15 H 1.08004 * 119.99859 * 0.02562 * 14 13 12 16 16 C 1.38805 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31622 * 120.00455 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00168 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 89.99498 * 18 16 14 20 20 H 1.48496 * 109.47434 * 209.99930 * 18 16 14 21 21 H 1.48507 * 109.46769 * 330.00032 * 18 16 14 22 22 C 1.52999 * 109.46806 * 85.00215 * 10 9 7 23 23 C 1.52989 * 117.50173 * 8.74511 * 22 10 9 24 24 C 1.52997 * 117.50017 * 300.08213 * 22 10 9 25 25 H 1.09003 * 109.47039 * 60.00277 * 1 2 3 26 26 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47366 * 299.99531 * 1 2 3 28 28 H 1.09000 * 109.46800 * 239.99810 * 2 1 3 29 29 H 1.08998 * 109.47112 * 120.00203 * 2 1 3 30 30 H 1.09000 * 109.47534 * 60.00260 * 3 2 1 31 31 H 1.08998 * 109.47388 * 300.00034 * 3 2 1 32 32 H 1.08994 * 109.47182 * 179.97438 * 6 4 3 33 33 H 1.08996 * 109.47077 * 300.00025 * 6 4 3 34 34 H 1.08997 * 109.46873 * 59.99848 * 6 4 3 35 35 H 0.96996 * 120.00766 * 359.97438 * 9 7 4 36 36 H 1.09001 * 109.47671 * 295.00315 * 12 10 9 37 37 H 1.08998 * 109.47454 * 175.00312 * 12 10 9 38 38 H 0.97005 * 119.99811 * 0.02562 * 13 12 10 39 39 H 0.97000 * 120.00679 * 179.97438 * 17 16 14 40 40 H 1.09000 * 115.54930 * 154.41840 * 22 10 9 41 41 H 1.09003 * 117.50242 * 359.97438 * 23 22 10 42 42 H 1.09008 * 117.50262 * 145.02356 * 23 22 10 43 43 H 1.08996 * 117.50257 * 214.98869 * 24 22 10 44 44 H 1.09008 * 117.49446 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9330 0.8531 -0.8426 6 6 4.0805 0.8327 1.3065 7 6 4.0722 2.8579 -0.1244 8 8 3.2841 3.7763 -0.2047 9 7 5.3973 3.1033 -0.1458 10 6 5.8856 4.4793 -0.2667 11 1 5.2131 5.0484 -0.9085 12 6 7.2882 4.4709 -0.8778 13 7 7.2619 3.7464 -2.1509 14 6 8.4091 3.6131 -2.8867 15 1 9.3334 4.0417 -2.5282 16 6 8.3841 2.9272 -4.0931 17 7 7.2578 2.4043 -4.5297 18 14 9.9491 2.7447 -5.0965 19 1 10.6558 1.5034 -4.6901 20 1 9.6061 2.6692 -6.5394 21 1 10.8297 3.9164 -4.8576 22 6 5.9369 5.1257 1.1191 23 6 5.6962 4.2218 2.3297 24 6 4.6253 5.2276 1.9001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 5.1705 0.8323 1.3059 33 1 3.7175 1.4220 2.1485 34 1 3.7172 -0.1910 1.3960 35 1 6.0277 2.3689 -0.0812 36 1 7.9796 3.9786 -0.1939 37 1 7.6158 5.4961 -1.0499 38 1 6.4309 3.3649 -2.4748 39 1 7.2401 1.9253 -5.3730 40 1 6.6545 5.9383 1.2325 41 1 5.5008 3.1665 2.1389 42 1 6.2551 4.4398 3.2398 43 1 4.4801 6.1070 2.5276 44 1 3.7256 4.8344 1.4265 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699584261.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:48 Heat of formation + Delta-G solvation = -41.479766 kcal Electronic energy + Delta-G solvation = -21425.093247 eV Core-core repulsion = 18376.998054 eV Total energy + Delta-G solvation = -3048.095194 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39989 -38.67676 -36.75076 -36.54481 -34.81103 -33.33397 -32.43642 -29.71913 -27.48408 -26.04688 -24.90996 -23.45772 -22.96643 -22.20429 -20.94185 -20.73108 -19.21967 -17.95944 -17.24627 -17.16924 -16.56950 -16.35412 -15.54253 -15.26552 -15.19261 -15.01498 -14.73945 -14.47767 -13.95455 -13.62003 -13.40476 -13.18990 -13.07584 -12.86934 -12.77776 -12.68474 -12.62913 -12.25557 -12.09521 -12.09036 -11.83868 -11.81178 -11.70358 -11.39447 -11.24211 -10.98876 -10.82218 -10.55551 -9.89971 -9.01854 -7.94693 -5.24483 1.48557 1.49881 1.58309 1.71900 2.27576 2.55788 2.96932 3.39751 3.61790 3.75653 3.83759 3.98264 4.01938 4.11330 4.18971 4.31001 4.38130 4.41537 4.46407 4.50517 4.64353 4.68148 4.82362 4.83870 4.88795 4.92962 4.96554 5.03572 5.06691 5.14104 5.16727 5.21929 5.29243 5.32727 5.40906 5.45992 5.50071 5.52318 5.64387 6.25957 6.64685 7.33387 7.34213 8.06293 8.30777 9.28435 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015446 B = 0.005312 C = 0.004234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.360571 B = 5269.624940 C = 6611.012862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.093 4.093 4 C -0.110 4.110 5 H 0.096 0.904 6 C -0.138 4.138 7 C 0.514 3.486 8 O -0.577 6.577 9 N -0.704 5.704 10 C 0.177 3.823 11 H 0.056 0.944 12 C 0.151 3.849 13 N -0.743 5.743 14 C -0.245 4.245 15 H 0.079 0.921 16 C -0.072 4.072 17 N -0.969 5.969 18 Si 0.973 3.027 19 H -0.284 1.284 20 H -0.299 1.299 21 H -0.270 1.270 22 C -0.169 4.169 23 C -0.160 4.160 24 C -0.190 4.190 25 H 0.045 0.955 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.408 0.592 36 H 0.040 0.960 37 H 0.034 0.966 38 H 0.374 0.626 39 H 0.250 0.750 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.100 0.900 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.542 -3.707 15.700 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.131 4.131 4 C -0.131 4.131 5 H 0.114 0.886 6 C -0.195 4.195 7 C 0.303 3.697 8 O -0.457 6.457 9 N -0.354 5.354 10 C 0.072 3.928 11 H 0.074 0.926 12 C 0.024 3.976 13 N -0.386 5.386 14 C -0.377 4.377 15 H 0.096 0.904 16 C -0.264 4.264 17 N -0.619 5.619 18 Si 0.802 3.198 19 H -0.211 1.211 20 H -0.226 1.226 21 H -0.195 1.195 22 C -0.189 4.189 23 C -0.197 4.197 24 C -0.227 4.227 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.244 0.756 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.206 0.794 39 H 0.059 0.941 40 H 0.139 0.861 41 H 0.112 0.888 42 H 0.127 0.873 43 H 0.118 0.882 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.893 -3.012 15.612 17.751 hybrid contribution 0.723 -0.244 -1.272 1.483 sum -7.170 -3.256 14.340 16.360 Atomic orbital electron populations 1.21765 0.95376 1.02137 1.01646 1.21582 0.96333 0.95172 1.02819 1.21344 0.92108 0.97767 1.01867 1.21382 0.97911 0.91774 1.02048 0.88590 1.21820 1.01493 1.02099 0.94092 1.21174 0.82013 0.92162 0.74397 1.90582 1.56157 1.47623 1.51380 1.45963 1.07083 1.09093 1.73309 1.20448 0.94728 0.82783 0.94862 0.92558 1.21016 0.93869 0.95754 0.86939 1.42521 1.09042 1.65725 1.21288 1.19635 0.89635 1.27739 1.00673 0.90355 1.25538 0.99927 1.01441 0.99515 1.69828 1.26900 1.42667 1.22532 0.85146 0.79170 0.78082 0.77362 1.21127 1.22586 1.19523 1.22604 1.01470 1.03229 0.91551 1.23008 1.02230 0.96907 0.97534 1.23262 0.93762 1.02175 1.03503 0.93598 0.91539 0.92497 0.92091 0.90098 0.91898 0.93738 0.91661 0.92007 0.89312 0.75633 0.94177 0.94810 0.79389 0.94088 0.86058 0.88798 0.87294 0.88197 0.88904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.91 71.98 0.71 -1.88 16 2 C -0.12 -2.25 5.69 30.59 0.17 -2.08 16 3 C -0.09 -2.25 4.03 30.59 0.12 -2.12 16 4 C -0.11 -2.75 2.73 -11.54 -0.03 -2.78 16 5 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 6 C -0.14 -2.52 8.65 71.99 0.62 -1.90 16 7 C 0.51 16.61 5.99 87.66 0.53 17.14 16 8 O -0.58 -22.36 12.95 -3.03 -0.04 -22.40 16 9 N -0.70 -22.32 2.95 -442.53 -1.30 -23.62 16 10 C 0.18 6.07 2.59 44.99 0.12 6.19 16 11 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 12 C 0.15 5.83 5.80 86.38 0.50 6.33 16 13 N -0.74 -36.90 5.43 -343.44 -1.87 -38.77 16 14 C -0.25 -13.39 9.99 84.03 0.84 -12.55 16 15 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 16 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 17 N -0.97 -58.86 13.06 21.65 0.28 -58.58 16 18 Si 0.97 45.51 29.55 68.60 2.03 47.54 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 C -0.17 -4.67 5.70 -10.80 -0.06 -4.73 16 23 C -0.16 -3.74 9.74 30.61 0.30 -3.44 16 24 C -0.19 -5.13 9.82 30.62 0.30 -4.83 16 25 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.08 1.22 6.57 -2.39 -0.02 1.20 16 30 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.29 7.95 -2.39 -0.02 1.27 16 32 H 0.06 1.14 7.56 -2.39 -0.02 1.13 16 33 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.27 6.57 -2.39 -0.02 1.26 16 35 H 0.41 12.26 8.02 -92.71 -0.74 11.52 16 36 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.37 20.18 7.33 -92.70 -0.68 19.50 16 39 H 0.25 14.81 8.31 -92.71 -0.77 14.03 16 40 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 41 H 0.09 2.20 6.48 -2.39 -0.02 2.18 16 42 H 0.11 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.09 3.04 5.01 -2.38 -0.01 3.03 16 Total: -1.00 -65.90 348.30 3.25 -62.65 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -0.44 Total: 43.43 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 4.59 Total: -10.25 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -2.89 Total: -120.97 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.04 Total: -22.40 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -65.90 3.25 -62.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699584261.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.170 kcal (2) G-P(sol) polarization free energy of solvation -65.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds