Wall clock time and date at job start Mon Mar 30 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47146 * 54.99480 * 4 3 2 6 6 C 1.53005 * 109.46836 * 295.00188 * 4 3 2 7 7 C 1.50697 * 109.47301 * 175.00426 * 4 3 2 8 8 O 1.21280 * 119.99974 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99850 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99634 * 179.97438 * 9 7 4 11 11 H 1.09002 * 109.47209 * 35.00310 * 10 9 7 12 12 C 1.53010 * 109.46603 * 155.00003 * 10 9 7 13 13 N 1.46494 * 109.47235 * 305.00064 * 12 10 9 14 14 C 1.36935 * 120.00222 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99318 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00519 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00305 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46936 * 60.00130 * 18 16 14 20 20 H 1.48497 * 109.47440 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47237 * 300.00238 * 18 16 14 22 22 C 1.52994 * 109.47696 * 275.00090 * 10 9 7 23 23 C 1.52999 * 117.50119 * 128.74676 * 22 10 9 24 24 C 1.53005 * 117.49935 * 60.08595 * 22 10 9 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47028 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47335 * 299.99923 * 6 4 3 34 34 H 1.08996 * 109.46933 * 60.00052 * 6 4 3 35 35 H 0.96997 * 120.00076 * 0.02562 * 9 7 4 36 36 H 1.08994 * 109.46990 * 65.00283 * 12 10 9 37 37 H 1.09008 * 109.46759 * 185.00038 * 12 10 9 38 38 H 0.97001 * 119.99767 * 0.02562 * 13 12 10 39 39 H 0.97002 * 120.00062 * 180.02562 * 17 16 14 40 40 H 1.09003 * 115.54958 * 274.42185 * 22 10 9 41 41 H 1.08994 * 117.49910 * 0.02562 * 23 22 10 42 42 H 1.08997 * 117.49734 * 145.02427 * 23 22 10 43 43 H 1.08994 * 117.49911 * 214.98635 * 24 22 10 44 44 H 1.09000 * 117.49341 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 4.0723 2.8580 -0.1231 8 8 3.2842 3.7763 -0.2043 9 7 5.3974 3.1033 -0.1445 10 6 5.8857 4.4792 -0.2654 11 1 5.2131 5.1516 0.2673 12 6 7.2883 4.5774 0.3382 13 7 7.2617 4.0860 1.7180 14 6 8.4098 4.0782 2.4643 15 1 9.3348 4.4347 2.0357 16 6 8.3845 3.6131 3.7719 17 7 7.2571 3.1791 4.2943 18 14 9.9508 3.6018 4.7897 19 1 10.4719 4.9870 4.9116 20 1 9.6586 3.0626 6.1421 21 1 10.9672 2.7474 4.1246 22 6 5.9373 4.8743 -1.7425 23 6 5.2572 6.1835 -2.1478 24 6 4.6250 4.8424 -2.5286 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 5.1694 0.8328 1.3086 33 1 3.7157 1.4227 2.1499 34 1 3.7161 -0.1906 1.3978 35 1 6.0277 2.3688 -0.0807 36 1 7.9797 3.9734 -0.2493 37 1 7.6158 5.6171 0.3289 38 1 6.4308 3.7662 2.1030 39 1 7.2393 2.8545 5.2082 40 1 6.8482 4.5954 -2.2722 41 1 4.7733 6.7636 -1.3621 42 1 5.7204 6.7657 -2.9445 43 1 4.6727 4.5428 -3.5755 44 1 3.7249 4.5403 -1.9932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699584262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:51 Heat of formation + Delta-G solvation = -27.608884 kcal Electronic energy + Delta-G solvation = -21309.239060 eV Core-core repulsion = 18261.745353 eV Total energy + Delta-G solvation = -3047.493707 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92246 -37.47030 -35.67232 -34.97877 -33.39413 -31.95870 -30.86736 -27.98107 -26.47298 -24.27755 -23.61024 -22.11663 -21.50350 -21.13415 -20.00673 -19.52161 -17.30589 -16.52458 -16.07178 -15.52128 -15.10853 -14.94528 -14.37132 -13.99234 -13.90293 -13.64073 -13.13413 -12.98134 -12.78062 -12.40918 -12.15691 -12.05206 -11.79662 -11.62559 -11.24732 -11.10485 -11.04853 -10.90431 -10.87996 -10.79652 -10.65731 -10.46812 -10.21361 -10.07144 -9.91799 -9.67835 -9.27198 -8.91070 -8.53185 -6.96616 -5.78753 -3.08417 3.01963 3.42092 3.46639 3.47666 3.49167 4.18072 4.55333 4.82597 4.87994 4.91295 4.97159 5.19894 5.24168 5.25989 5.32531 5.39250 5.47320 5.54247 5.65640 5.73527 5.79527 5.82825 5.87401 5.88984 5.94403 5.99522 6.07330 6.11091 6.16590 6.24281 6.25395 6.39279 6.44051 6.50520 6.54250 6.55798 6.71455 7.01649 7.66937 7.97210 8.39180 8.65393 9.51034 10.06891 10.42847 11.43436 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.005548 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.949738 B = 5045.300975 C = 6730.985516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.098 4.098 4 C -0.110 4.110 5 H 0.091 0.909 6 C -0.145 4.145 7 C 0.521 3.479 8 O -0.549 6.549 9 N -0.707 5.707 10 C 0.168 3.832 11 H 0.086 0.914 12 C 0.148 3.852 13 N -0.731 5.731 14 C -0.243 4.243 15 H 0.070 0.930 16 C -0.010 4.010 17 N -0.931 5.931 18 Si 0.907 3.093 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.185 4.185 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.403 0.597 36 H 0.024 0.976 37 H 0.034 0.966 38 H 0.386 0.614 39 H 0.256 0.744 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -4.654 -12.240 15.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.136 4.136 4 C -0.131 4.131 5 H 0.109 0.891 6 C -0.203 4.203 7 C 0.307 3.693 8 O -0.428 6.428 9 N -0.356 5.356 10 C 0.063 3.937 11 H 0.104 0.896 12 C 0.020 3.980 13 N -0.376 5.376 14 C -0.374 4.374 15 H 0.088 0.912 16 C -0.207 4.207 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.182 4.182 23 C -0.210 4.210 24 C -0.222 4.222 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.042 0.958 37 H 0.052 0.948 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -9.010 -3.977 -12.217 15.693 hybrid contribution 1.082 -0.418 0.740 1.376 sum -7.928 -4.395 -11.477 14.625 Atomic orbital electron populations 1.21759 0.96017 1.01230 1.01886 1.21605 0.95756 0.96997 1.02021 1.21406 0.92644 0.96269 1.03315 1.21324 0.97455 0.93757 1.00569 0.89130 1.21819 1.02010 1.00744 0.95709 1.20563 0.82404 0.91110 0.75174 1.90581 1.55532 1.46353 1.50324 1.45975 1.06841 1.09432 1.73374 1.20774 0.97181 0.83363 0.92402 0.89575 1.20911 0.91868 0.97824 0.87392 1.42333 1.10172 1.76630 1.08453 1.19170 0.88561 1.35673 0.94035 0.91233 1.24729 0.96967 1.01767 0.97212 1.69657 1.24724 1.48453 1.15049 0.86275 0.82705 0.77661 0.79557 1.21285 1.21699 1.21282 1.22653 0.96891 1.02191 0.96450 1.22888 1.04159 0.90618 1.03293 1.23265 0.98261 1.00839 0.99849 0.93022 0.92682 0.92872 0.91616 0.92249 0.91441 0.91284 0.91484 0.91677 0.91813 0.76211 0.95840 0.94831 0.77960 0.93458 0.88007 0.88793 0.89298 0.90011 0.86438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.16 0.37 -1.01 16 2 C -0.13 -1.25 5.69 -26.73 -0.15 -1.40 16 3 C -0.10 -1.20 4.03 -26.73 -0.11 -1.31 16 4 C -0.11 -1.41 2.72 -91.77 -0.25 -1.66 16 5 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.15 -1.94 8.84 37.16 0.33 -1.61 16 7 C 0.52 8.38 6.49 -10.99 -0.07 8.31 16 8 O -0.55 -10.29 12.94 5.56 0.07 -10.22 16 9 N -0.71 -11.36 4.39 -53.80 -0.24 -11.59 16 10 C 0.17 2.88 2.43 -67.93 -0.17 2.71 16 11 H 0.09 1.70 7.34 -51.93 -0.38 1.32 16 12 C 0.15 2.91 5.80 -4.04 -0.02 2.89 16 13 N -0.73 -18.02 5.43 -59.91 -0.33 -18.34 16 14 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 15 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 16 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 17 N -0.93 -27.61 13.06 55.49 0.72 -26.88 16 18 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.16 -2.36 5.36 -90.62 -0.49 -2.85 16 23 C -0.17 -2.34 10.18 -26.69 -0.27 -2.61 16 24 C -0.19 -2.61 9.74 -26.69 -0.26 -2.87 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.64 6.56 -51.93 -0.34 0.30 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 7.95 -51.93 -0.41 0.45 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.96 7.57 -51.93 -0.39 0.57 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.71 6.56 -51.93 -0.34 0.37 16 35 H 0.40 6.21 8.02 -40.82 -0.33 5.88 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.03 0.68 8.14 -51.92 -0.42 0.25 16 38 H 0.39 10.13 7.33 -40.82 -0.30 9.83 16 39 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.10 1.38 8.11 -51.93 -0.42 0.96 16 41 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 42 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.12 1.92 5.02 -51.93 -0.26 1.66 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -30.22 351.61 -8.62 -38.84 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -7.79 Total: 14.45 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.34 Total: -8.62 kcal Atomic # 7 Polarization: -56.98 SS G_CDS: 0.16 Total: -56.82 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.22 -8.62 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699584262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.227 kcal (2) G-P(sol) polarization free energy of solvation -30.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds