Wall clock time and date at job start Mon Mar 30 2020 00:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.53006 * 109.46997 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47146 * 54.99480 * 4 3 2 6 6 C 1.53005 * 109.46836 * 295.00188 * 4 3 2 7 7 C 1.50697 * 109.47301 * 175.00426 * 4 3 2 8 8 O 1.21280 * 119.99974 * 359.97438 * 7 4 3 9 9 N 1.34777 * 119.99850 * 180.02562 * 7 4 3 10 10 C 1.46499 * 119.99634 * 179.97438 * 9 7 4 11 11 H 1.09002 * 109.47209 * 35.00310 * 10 9 7 12 12 C 1.53010 * 109.46603 * 155.00003 * 10 9 7 13 13 N 1.46494 * 109.47235 * 305.00064 * 12 10 9 14 14 C 1.36935 * 120.00222 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99318 * 0.02562 * 14 13 12 16 16 C 1.38810 * 120.00519 * 179.97438 * 14 13 12 17 17 N 1.31622 * 119.99719 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00305 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46936 * 60.00130 * 18 16 14 20 20 H 1.48497 * 109.47440 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47237 * 300.00238 * 18 16 14 22 22 C 1.52994 * 109.47696 * 275.00090 * 10 9 7 23 23 C 1.52999 * 117.50119 * 128.74676 * 22 10 9 24 24 C 1.53005 * 117.49935 * 60.08595 * 22 10 9 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 28 28 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 29 29 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 30 30 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 31 31 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 32 32 H 1.09002 * 109.47028 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47335 * 299.99923 * 6 4 3 34 34 H 1.08996 * 109.46933 * 60.00052 * 6 4 3 35 35 H 0.96997 * 120.00076 * 0.02562 * 9 7 4 36 36 H 1.08994 * 109.46990 * 65.00283 * 12 10 9 37 37 H 1.09008 * 109.46759 * 185.00038 * 12 10 9 38 38 H 0.97001 * 119.99767 * 0.02562 * 13 12 10 39 39 H 0.97002 * 120.00062 * 180.02562 * 17 16 14 40 40 H 1.09003 * 115.54958 * 274.42185 * 22 10 9 41 41 H 1.08994 * 117.49910 * 0.02562 * 23 22 10 42 42 H 1.08997 * 117.49734 * 145.02427 * 23 22 10 43 43 H 1.08994 * 117.49911 * 214.98635 * 24 22 10 44 44 H 1.09000 * 117.49341 * 0.02562 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8332 1.3083 7 6 4.0723 2.8580 -0.1231 8 8 3.2842 3.7763 -0.2043 9 7 5.3974 3.1033 -0.1445 10 6 5.8857 4.4792 -0.2654 11 1 5.2131 5.1516 0.2673 12 6 7.2883 4.5774 0.3382 13 7 7.2617 4.0860 1.7180 14 6 8.4098 4.0782 2.4643 15 1 9.3348 4.4347 2.0357 16 6 8.3845 3.6131 3.7719 17 7 7.2571 3.1791 4.2943 18 14 9.9508 3.6018 4.7897 19 1 10.4719 4.9870 4.9116 20 1 9.6586 3.0626 6.1421 21 1 10.9672 2.7474 4.1246 22 6 5.9373 4.8743 -1.7425 23 6 5.2572 6.1835 -2.1478 24 6 4.6250 4.8424 -2.5286 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 5.1694 0.8328 1.3086 33 1 3.7157 1.4227 2.1499 34 1 3.7161 -0.1906 1.3978 35 1 6.0277 2.3688 -0.0807 36 1 7.9797 3.9734 -0.2493 37 1 7.6158 5.6171 0.3289 38 1 6.4308 3.7662 2.1030 39 1 7.2393 2.8545 5.2082 40 1 6.8482 4.5954 -2.2722 41 1 4.7733 6.7636 -1.3621 42 1 5.7204 6.7657 -2.9445 43 1 4.6727 4.5428 -3.5755 44 1 3.7249 4.5403 -1.9932 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699584262.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:51 Heat of formation + Delta-G solvation = -45.643314 kcal Electronic energy + Delta-G solvation = -21310.021091 eV Core-core repulsion = 18261.745353 eV Total energy + Delta-G solvation = -3048.275739 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.22333 -38.70974 -36.73943 -36.61089 -34.97941 -33.26509 -32.45200 -29.60818 -27.47752 -26.02816 -24.86795 -23.27740 -23.05735 -22.13083 -21.29694 -20.72117 -19.23257 -17.88706 -17.36347 -16.75429 -16.61955 -16.23849 -15.80113 -15.31979 -15.11169 -14.96911 -14.82455 -14.42646 -13.96642 -13.70923 -13.38845 -13.20646 -13.10755 -12.77684 -12.73975 -12.66925 -12.48733 -12.29189 -12.12108 -12.09428 -11.84508 -11.79558 -11.68643 -11.36530 -11.23843 -11.07977 -10.96674 -10.53492 -9.88112 -9.01058 -7.93341 -5.23240 1.48788 1.51247 1.57301 1.73117 2.23100 2.56563 3.03158 3.40535 3.58552 3.76456 3.84951 3.96064 4.02022 4.12663 4.17093 4.30585 4.34616 4.41001 4.45049 4.47209 4.64169 4.67882 4.81285 4.82249 4.89930 4.91393 4.98210 5.04304 5.05504 5.11815 5.15265 5.27390 5.29094 5.33569 5.39731 5.47257 5.50477 5.53584 5.64461 6.26757 6.67169 7.34436 7.36133 8.07010 8.32025 9.29238 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.014363 B = 0.005548 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.949738 B = 5045.300975 C = 6730.985516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.101 4.101 5 H 0.120 0.880 6 C -0.139 4.139 7 C 0.514 3.486 8 O -0.579 6.579 9 N -0.704 5.704 10 C 0.177 3.823 11 H 0.054 0.946 12 C 0.150 3.850 13 N -0.742 5.742 14 C -0.248 4.248 15 H 0.078 0.922 16 C -0.069 4.069 17 N -0.966 5.966 18 Si 0.972 3.028 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.275 1.275 22 C -0.164 4.164 23 C -0.167 4.167 24 C -0.180 4.180 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.045 0.955 32 H 0.054 0.946 33 H 0.036 0.964 34 H 0.090 0.910 35 H 0.407 0.593 36 H 0.040 0.960 37 H 0.033 0.967 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.121 0.879 41 H 0.079 0.921 42 H 0.116 0.884 43 H 0.105 0.895 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.768 -5.567 -13.930 16.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.132 4.132 4 C -0.122 4.122 5 H 0.138 0.862 6 C -0.196 4.196 7 C 0.302 3.698 8 O -0.460 6.460 9 N -0.354 5.354 10 C 0.072 3.928 11 H 0.072 0.928 12 C 0.024 3.976 13 N -0.385 5.385 14 C -0.379 4.379 15 H 0.095 0.905 16 C -0.262 4.262 17 N -0.616 5.616 18 Si 0.801 3.199 19 H -0.208 1.208 20 H -0.224 1.224 21 H -0.201 1.201 22 C -0.184 4.184 23 C -0.204 4.204 24 C -0.217 4.217 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.109 0.891 35 H 0.243 0.757 36 H 0.058 0.942 37 H 0.051 0.949 38 H 0.207 0.793 39 H 0.059 0.941 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.134 0.866 43 H 0.123 0.877 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.120 -4.882 -13.947 16.861 hybrid contribution 0.787 -0.076 1.229 1.461 sum -7.333 -4.958 -12.718 15.495 Atomic orbital electron populations 1.21767 0.95471 1.02124 1.01601 1.21581 0.96247 0.95079 1.02942 1.21359 0.92079 0.97862 1.01856 1.21348 0.97819 0.91747 1.01275 0.86201 1.21761 1.01143 1.01851 0.94864 1.21192 0.82019 0.92274 0.74296 1.90571 1.56174 1.47641 1.51626 1.45959 1.07115 1.09069 1.73245 1.20518 0.94812 0.83538 0.93922 0.92821 1.21025 0.93766 0.97592 0.85253 1.42494 1.09021 1.76775 1.10231 1.19585 0.89534 1.34384 0.94428 0.90456 1.25517 0.99865 1.02305 0.98518 1.69822 1.26772 1.50018 1.14997 0.85239 0.79345 0.77751 0.77545 1.20769 1.22381 1.20086 1.22562 0.98033 1.03253 0.94537 1.22973 1.03561 0.90426 1.03468 1.23204 0.96817 1.01099 1.00599 0.91507 0.93454 0.92770 0.91286 0.90607 0.92112 0.93596 0.92647 0.94483 0.89079 0.75713 0.94190 0.94879 0.79311 0.94094 0.86107 0.90276 0.86618 0.87690 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.91 71.98 0.71 -1.83 16 2 C -0.12 -2.17 5.69 30.60 0.17 -2.00 16 3 C -0.09 -2.25 4.03 30.60 0.12 -2.13 16 4 C -0.10 -2.53 2.72 -11.54 -0.03 -2.56 16 5 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 6 C -0.14 -3.68 8.84 71.98 0.64 -3.04 16 7 C 0.51 16.76 6.49 87.66 0.57 17.33 16 8 O -0.58 -22.46 12.94 -3.03 -0.04 -22.50 16 9 N -0.70 -22.70 4.39 -442.53 -1.94 -24.64 16 10 C 0.18 6.11 2.43 44.99 0.11 6.22 16 11 H 0.05 2.20 7.34 -2.39 -0.02 2.19 16 12 C 0.15 5.85 5.80 86.38 0.50 6.35 16 13 N -0.74 -36.88 5.43 -343.45 -1.87 -38.75 16 14 C -0.25 -13.52 9.99 84.03 0.84 -12.68 16 15 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 16 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 17 N -0.97 -58.31 13.06 21.65 0.28 -58.03 16 18 Si 0.97 45.41 29.55 68.60 2.03 47.44 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 22 C -0.16 -4.55 5.36 -10.79 -0.06 -4.60 16 23 C -0.17 -4.29 10.18 30.62 0.31 -3.98 16 24 C -0.18 -4.82 9.74 30.62 0.30 -4.52 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 1.20 6.56 -2.39 -0.02 1.19 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.54 7.95 -2.39 -0.02 1.52 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.05 1.59 7.57 -2.39 -0.02 1.57 16 33 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 1.89 6.56 -2.39 -0.02 1.88 16 35 H 0.41 12.40 8.02 -92.71 -0.74 11.65 16 36 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.37 20.19 7.33 -92.71 -0.68 19.51 16 39 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 40 H 0.12 2.93 8.11 -2.39 -0.02 2.91 16 41 H 0.08 2.27 8.05 -2.39 -0.02 2.25 16 42 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 43 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.09 3.05 5.02 -2.39 -0.01 3.04 16 Total: -1.00 -65.51 351.61 2.67 -62.84 By element: Atomic # 1 Polarization: 44.99 SS G_CDS: -0.45 Total: 44.54 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: 4.65 Total: -10.90 kcal Atomic # 7 Polarization: -117.89 SS G_CDS: -3.53 Total: -121.42 kcal Atomic # 8 Polarization: -22.46 SS G_CDS: -0.04 Total: -22.50 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Total: -65.51 2.67 -62.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699584262.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.196 kcal (2) G-P(sol) polarization free energy of solvation -65.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds