Wall clock time and date at job start Mon Mar 30 2020 00:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53000 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47401 * 55.00437 * 4 3 2 6 6 C 1.52999 * 109.47032 * 295.00209 * 4 3 2 7 7 C 1.50702 * 109.47009 * 175.00540 * 4 3 2 8 8 O 1.21282 * 119.99950 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99718 * 180.02562 * 7 4 3 10 10 C 1.46503 * 119.99882 * 179.97438 * 9 7 4 11 11 C 1.52989 * 109.47086 * 174.81521 * 10 9 7 12 12 N 1.46506 * 112.85369 * 311.20861 * 11 10 9 13 13 C 1.36935 * 119.99465 * 293.76856 * 12 11 10 14 14 H 1.08003 * 120.00522 * 353.86529 * 13 12 11 15 15 C 1.38813 * 119.99741 * 173.86934 * 13 12 11 16 16 N 1.31622 * 120.00292 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99924 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47327 * 90.00100 * 17 15 13 19 19 H 1.48502 * 109.46814 * 209.99986 * 17 15 13 20 20 H 1.48497 * 109.47109 * 329.99606 * 17 15 13 21 21 C 1.53788 * 113.69420 * 82.48013 * 11 10 9 22 22 C 1.53773 * 87.08216 * 139.98994 * 21 11 10 23 23 C 1.53777 * 87.08345 * 334.56724 * 22 21 11 24 24 H 1.08994 * 109.47259 * 300.00270 * 1 2 3 25 25 H 1.09007 * 109.47186 * 59.99990 * 1 2 3 26 26 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46886 * 240.00051 * 2 1 3 28 28 H 1.08998 * 109.47064 * 120.00149 * 2 1 3 29 29 H 1.09007 * 109.47046 * 60.00019 * 3 2 1 30 30 H 1.08998 * 109.47303 * 300.00003 * 3 2 1 31 31 H 1.08997 * 109.47123 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47454 * 299.99745 * 6 4 3 33 33 H 1.08994 * 109.47208 * 59.99943 * 6 4 3 34 34 H 0.96999 * 120.00313 * 359.97438 * 9 7 4 35 35 H 1.09004 * 109.47189 * 54.80960 * 10 9 7 36 36 H 1.09001 * 109.46755 * 294.81348 * 10 9 7 37 37 H 0.96996 * 119.99872 * 113.48626 * 12 11 10 38 38 H 0.96991 * 120.00377 * 180.02562 * 16 15 13 39 39 H 1.09001 * 113.61316 * 254.54168 * 21 11 10 40 40 H 1.08997 * 113.60856 * 25.43936 * 21 11 10 41 41 H 1.09001 * 113.61105 * 220.01608 * 22 21 11 42 42 H 1.09003 * 113.61407 * 89.11902 * 22 21 11 43 43 H 1.09000 * 113.61308 * 270.88160 * 23 22 21 44 44 H 1.09004 * 113.61505 * 139.98417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8330 1.3083 7 6 4.0723 2.8579 -0.1231 8 8 3.2842 3.7762 -0.2042 9 7 5.3975 3.1032 -0.1445 10 6 5.8859 4.4791 -0.2653 11 6 7.4102 4.4924 -0.1355 12 7 7.8893 3.7331 1.0222 13 6 7.6024 4.1640 2.2899 14 1 7.1096 5.1134 2.4390 15 6 7.9449 3.3805 3.3834 16 7 7.6696 3.7949 4.6020 17 14 8.7978 1.7388 3.1256 18 1 10.2691 1.9402 3.1233 19 1 8.4270 0.8105 4.2238 20 1 8.3753 1.1604 1.8247 21 6 8.1448 4.1512 -1.4428 22 6 9.1530 5.2512 -1.0713 23 6 8.0258 5.8971 -0.2485 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1694 0.8334 1.3089 32 1 3.7158 1.4226 2.1499 33 1 3.7160 -0.1907 1.3978 34 1 6.0278 2.3687 -0.0799 35 1 5.4486 5.0905 0.5241 36 1 5.6004 4.8819 -1.2371 37 1 8.4062 2.9230 0.8906 38 1 7.9092 3.2476 5.3661 39 1 8.5751 3.1498 -1.4532 40 1 7.5663 4.3738 -2.3394 41 1 9.4741 5.8541 -1.9208 42 1 9.9859 4.8937 -0.4658 43 1 7.4150 6.5970 -0.8187 44 1 8.3603 6.3053 0.7053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700144470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:11 Heat of formation + Delta-G solvation = -28.497375 kcal Electronic energy + Delta-G solvation = -21549.905431 eV Core-core repulsion = 18502.373196 eV Total energy + Delta-G solvation = -3047.532235 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.71582 -38.67860 -35.82373 -33.93196 -33.25840 -31.88847 -30.55686 -27.50158 -26.46759 -25.34733 -24.06666 -23.26535 -21.66654 -20.73802 -19.46076 -18.26179 -17.67668 -16.70133 -15.80719 -15.41796 -15.06215 -14.53805 -14.42667 -14.28072 -13.83311 -13.56144 -13.30669 -12.93080 -12.71039 -12.47820 -12.22994 -12.08907 -11.84981 -11.76600 -11.46353 -11.21469 -11.11475 -10.95632 -10.91353 -10.70152 -10.48872 -10.47378 -10.30311 -10.17200 -9.71046 -9.52214 -9.27574 -8.91348 -8.41779 -7.37732 -5.82456 -3.20498 3.12876 3.26697 3.31010 3.38579 3.72550 4.50810 4.82776 4.88912 4.96783 4.99831 5.07363 5.16192 5.24493 5.27852 5.34280 5.38403 5.41264 5.63202 5.68046 5.72441 5.79605 5.88416 5.95736 5.98531 6.02714 6.07638 6.10683 6.15826 6.20926 6.23214 6.25016 6.44874 6.47259 6.50877 6.65980 6.79270 6.88620 7.08161 7.94346 8.08025 8.35996 8.75029 9.12589 9.83918 10.02220 11.35540 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.006148 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.409044 B = 4552.911301 C = 5664.698415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.099 4.099 4 C -0.110 4.110 5 H 0.090 0.910 6 C -0.146 4.146 7 C 0.513 3.487 8 O -0.556 6.556 9 N -0.703 5.703 10 C 0.123 3.877 11 C 0.178 3.822 12 N -0.724 5.724 13 C -0.238 4.238 14 H 0.091 0.909 15 C 0.010 3.990 16 N -0.929 5.929 17 Si 0.879 3.121 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.277 1.277 21 C -0.146 4.146 22 C -0.130 4.130 23 C -0.147 4.147 24 H 0.054 0.946 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.398 0.602 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.362 0.638 38 H 0.259 0.741 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.339 -6.400 -12.526 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.137 4.137 4 C -0.131 4.131 5 H 0.108 0.892 6 C -0.203 4.203 7 C 0.299 3.701 8 O -0.434 6.434 9 N -0.352 5.352 10 C -0.004 4.004 11 C 0.085 3.915 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.109 0.891 15 C -0.186 4.186 16 N -0.577 5.577 17 Si 0.710 3.290 18 H -0.212 1.212 19 H -0.218 1.218 20 H -0.204 1.204 21 C -0.184 4.184 22 C -0.168 4.168 23 C -0.187 4.187 24 H 0.073 0.927 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.196 0.804 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.075 0.925 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.965 -5.616 -12.349 14.819 hybrid contribution 1.052 -1.524 0.138 1.857 sum -4.913 -7.140 -12.211 14.974 Atomic orbital electron populations 1.21759 0.95981 1.01217 1.01930 1.21606 0.95794 0.97004 1.01965 1.21404 0.92644 0.96218 1.03395 1.21303 0.97492 0.94003 1.00291 0.89223 1.21823 1.01704 1.00749 0.96062 1.20544 0.82499 0.91020 0.76035 1.90642 1.55532 1.46510 1.50751 1.45722 1.06447 1.09914 1.73093 1.21738 0.95647 0.82885 1.00096 1.20783 0.89928 0.93299 0.87445 1.42391 1.64166 1.28496 1.01577 1.18921 1.33273 1.03760 0.80783 0.89135 1.24649 1.00985 0.97868 0.95119 1.69689 1.52156 1.38573 0.97233 0.86654 0.79916 0.85506 0.76970 1.21197 1.21793 1.20358 1.23237 0.98636 0.99086 0.97428 1.22653 0.97174 0.97726 0.99225 1.23264 0.97508 0.97192 1.00780 0.92666 0.92833 0.93025 0.92248 0.91688 0.91272 0.91378 0.91873 0.91697 0.91757 0.76702 0.91365 0.92830 0.80410 0.93029 0.91964 0.90103 0.92508 0.90191 0.91022 0.90270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 37.16 0.37 -1.05 16 2 C -0.13 -1.30 5.69 -26.73 -0.15 -1.45 16 3 C -0.10 -1.28 4.03 -26.73 -0.11 -1.39 16 4 C -0.11 -1.51 2.72 -91.77 -0.25 -1.76 16 5 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 6 C -0.15 -2.04 8.84 37.16 0.33 -1.71 16 7 C 0.51 9.07 7.15 -10.98 -0.08 9.00 16 8 O -0.56 -11.68 15.91 5.56 0.09 -11.59 16 9 N -0.70 -12.20 5.27 -60.29 -0.32 -12.52 16 10 C 0.12 2.23 5.03 -4.05 -0.02 2.21 16 11 C 0.18 3.13 0.90 -131.01 -0.12 3.01 16 12 N -0.72 -15.36 4.38 -46.48 -0.20 -15.56 16 13 C -0.24 -6.23 9.74 -15.06 -0.15 -6.37 16 14 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 15 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 16 N -0.93 -28.28 13.97 55.49 0.78 -27.50 16 17 Si 0.88 20.79 27.68 -169.99 -4.71 16.09 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 20 H -0.28 -5.95 6.61 56.52 0.37 -5.58 16 21 C -0.15 -2.09 7.37 -25.92 -0.19 -2.28 16 22 C -0.13 -1.90 7.99 -25.93 -0.21 -2.11 16 23 C -0.15 -2.45 7.28 -25.92 -0.19 -2.64 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.49 8.14 -51.92 -0.42 0.07 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.07 0.93 7.95 -51.93 -0.41 0.51 16 31 H 0.06 0.94 7.56 -51.93 -0.39 0.55 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.74 6.56 -51.93 -0.34 0.40 16 34 H 0.40 6.54 7.54 -40.82 -0.31 6.23 16 35 H 0.07 1.46 8.13 -51.93 -0.42 1.04 16 36 H 0.05 0.90 7.95 -51.93 -0.41 0.48 16 37 H 0.36 7.54 5.80 -40.82 -0.24 7.31 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 39 H 0.06 0.86 8.09 -51.93 -0.42 0.44 16 40 H 0.08 1.02 7.97 -51.93 -0.41 0.61 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 44 H 0.08 1.52 7.83 -51.93 -0.41 1.11 16 LS Contribution 349.91 15.07 5.27 5.27 Total: -1.00 -30.72 349.91 -7.87 -38.59 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -7.92 Total: 13.58 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -0.86 Total: -6.36 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.25 Total: -55.58 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.71 Total: 16.09 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.72 -7.87 -38.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700144470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.094 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds