Wall clock time and date at job start Mon Mar 30 2020 00:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47062 * 2 1 4 4 C 1.53000 * 109.47062 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.47401 * 55.00437 * 4 3 2 6 6 C 1.52999 * 109.47032 * 295.00209 * 4 3 2 7 7 C 1.50702 * 109.47009 * 175.00540 * 4 3 2 8 8 O 1.21282 * 119.99950 * 359.97438 * 7 4 3 9 9 N 1.34779 * 119.99718 * 180.02562 * 7 4 3 10 10 C 1.46503 * 119.99882 * 179.97438 * 9 7 4 11 11 C 1.52989 * 109.47086 * 174.81521 * 10 9 7 12 12 N 1.46506 * 112.85369 * 311.20861 * 11 10 9 13 13 C 1.36935 * 119.99465 * 293.76856 * 12 11 10 14 14 H 1.08003 * 120.00522 * 353.86529 * 13 12 11 15 15 C 1.38813 * 119.99741 * 173.86934 * 13 12 11 16 16 N 1.31622 * 120.00292 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 119.99924 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47327 * 90.00100 * 17 15 13 19 19 H 1.48502 * 109.46814 * 209.99986 * 17 15 13 20 20 H 1.48497 * 109.47109 * 329.99606 * 17 15 13 21 21 C 1.53788 * 113.69420 * 82.48013 * 11 10 9 22 22 C 1.53773 * 87.08216 * 139.98994 * 21 11 10 23 23 C 1.53777 * 87.08345 * 334.56724 * 22 21 11 24 24 H 1.08994 * 109.47259 * 300.00270 * 1 2 3 25 25 H 1.09007 * 109.47186 * 59.99990 * 1 2 3 26 26 H 1.09004 * 109.47260 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46886 * 240.00051 * 2 1 3 28 28 H 1.08998 * 109.47064 * 120.00149 * 2 1 3 29 29 H 1.09007 * 109.47046 * 60.00019 * 3 2 1 30 30 H 1.08998 * 109.47303 * 300.00003 * 3 2 1 31 31 H 1.08997 * 109.47123 * 180.02562 * 6 4 3 32 32 H 1.09004 * 109.47454 * 299.99745 * 6 4 3 33 33 H 1.08994 * 109.47208 * 59.99943 * 6 4 3 34 34 H 0.96999 * 120.00313 * 359.97438 * 9 7 4 35 35 H 1.09004 * 109.47189 * 54.80960 * 10 9 7 36 36 H 1.09001 * 109.46755 * 294.81348 * 10 9 7 37 37 H 0.96996 * 119.99872 * 113.48626 * 12 11 10 38 38 H 0.96991 * 120.00377 * 180.02562 * 16 15 13 39 39 H 1.09001 * 113.61316 * 254.54168 * 21 11 10 40 40 H 1.08997 * 113.60856 * 25.43936 * 21 11 10 41 41 H 1.09001 * 113.61105 * 220.01608 * 22 21 11 42 42 H 1.09003 * 113.61407 * 89.11902 * 22 21 11 43 43 H 1.09000 * 113.61308 * 270.88160 * 23 22 21 44 44 H 1.09004 * 113.61505 * 139.98417 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8530 -0.8409 6 6 4.0794 0.8330 1.3083 7 6 4.0723 2.8579 -0.1231 8 8 3.2842 3.7762 -0.2042 9 7 5.3975 3.1032 -0.1445 10 6 5.8859 4.4791 -0.2653 11 6 7.4102 4.4924 -0.1355 12 7 7.8893 3.7331 1.0222 13 6 7.6024 4.1640 2.2899 14 1 7.1096 5.1134 2.4390 15 6 7.9449 3.3805 3.3834 16 7 7.6696 3.7949 4.6020 17 14 8.7978 1.7388 3.1256 18 1 10.2691 1.9402 3.1233 19 1 8.4270 0.8105 4.2238 20 1 8.3753 1.1604 1.8247 21 6 8.1448 4.1512 -1.4428 22 6 9.1530 5.2512 -1.0713 23 6 8.0258 5.8971 -0.2485 24 1 -0.3633 0.5138 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9563 -0.8900 31 1 5.1694 0.8334 1.3089 32 1 3.7158 1.4226 2.1499 33 1 3.7160 -0.1907 1.3978 34 1 6.0278 2.3687 -0.0799 35 1 5.4486 5.0905 0.5241 36 1 5.6004 4.8819 -1.2371 37 1 8.4062 2.9230 0.8906 38 1 7.9092 3.2476 5.3661 39 1 8.5751 3.1498 -1.4532 40 1 7.5663 4.3738 -2.3394 41 1 9.4741 5.8541 -1.9208 42 1 9.9859 4.8937 -0.4658 43 1 7.4150 6.5970 -0.8187 44 1 8.3603 6.3053 0.7053 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700144470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:10 Heat of formation + Delta-G solvation = -48.665191 kcal Electronic energy + Delta-G solvation = -21550.779973 eV Core-core repulsion = 18502.373196 eV Total energy + Delta-G solvation = -3048.406777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.12575 -40.05981 -36.90144 -35.43791 -35.15100 -32.91386 -32.47981 -28.92688 -27.50796 -26.68742 -25.67295 -24.67354 -22.93464 -21.85599 -20.77795 -19.89774 -19.52172 -18.04069 -17.19632 -16.64605 -16.42958 -16.22650 -15.74386 -15.68523 -15.00034 -14.80866 -14.72543 -14.57555 -14.22983 -13.76617 -13.41404 -13.20390 -13.16860 -13.09139 -12.97679 -12.74197 -12.48049 -12.20413 -12.14927 -11.83375 -11.78244 -11.76185 -11.63522 -11.56922 -11.39139 -10.96789 -10.90090 -10.59076 -9.91477 -9.30192 -7.97864 -5.33492 1.37569 1.43060 1.50495 1.72003 2.38168 2.50974 3.32062 3.44894 3.71598 3.76188 3.82313 3.95144 3.97672 4.05036 4.17397 4.31549 4.37490 4.39916 4.58376 4.67747 4.74768 4.78809 4.86906 4.88337 4.91126 4.94522 4.98362 5.03418 5.12983 5.13689 5.22411 5.30897 5.31375 5.38285 5.44338 5.51212 5.55713 5.68264 5.86035 6.25074 6.68693 7.11498 7.35243 7.84088 8.04932 9.24077 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.006148 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.409044 B = 4552.911301 C = 5664.698415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.101 4.101 5 H 0.125 0.875 6 C -0.143 4.143 7 C 0.504 3.496 8 O -0.596 6.596 9 N -0.699 5.699 10 C 0.129 3.871 11 C 0.160 3.840 12 N -0.720 5.720 13 C -0.211 4.211 14 H 0.044 0.956 15 C -0.063 4.063 16 N -0.988 5.988 17 Si 0.951 3.049 18 H -0.284 1.284 19 H -0.304 1.304 20 H -0.235 1.235 21 C -0.123 4.123 22 C -0.120 4.120 23 C -0.153 4.153 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.035 0.965 33 H 0.096 0.904 34 H 0.406 0.594 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.370 0.630 38 H 0.255 0.745 39 H 0.077 0.923 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.534 -9.156 -15.792 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.134 4.134 4 C -0.122 4.122 5 H 0.143 0.857 6 C -0.200 4.200 7 C 0.291 3.709 8 O -0.478 6.478 9 N -0.348 5.348 10 C 0.002 3.998 11 C 0.069 3.931 12 N -0.363 5.363 13 C -0.342 4.342 14 H 0.062 0.938 15 C -0.253 4.253 16 N -0.638 5.638 17 Si 0.778 3.222 18 H -0.210 1.210 19 H -0.231 1.231 20 H -0.159 1.159 21 C -0.161 4.161 22 C -0.158 4.158 23 C -0.193 4.193 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.089 0.911 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.114 0.886 34 H 0.242 0.758 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.204 0.796 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.147 -8.380 -15.690 18.518 hybrid contribution 0.733 -0.491 1.143 1.444 sum -4.414 -8.871 -14.547 17.601 Atomic orbital electron populations 1.21772 0.95494 1.02180 1.01576 1.21579 0.96241 0.94816 1.03096 1.21376 0.92165 0.98055 1.01766 1.21353 0.97837 0.91492 1.01479 0.85682 1.21817 1.01184 1.02086 0.94928 1.21373 0.82171 0.92462 0.74852 1.90621 1.56447 1.48212 1.52518 1.45731 1.06718 1.09679 1.72705 1.21623 0.95738 0.83031 0.99372 1.21120 0.89652 0.93989 0.88331 1.42230 1.64305 1.29013 1.00774 1.18693 1.30743 1.01608 0.83146 0.93812 1.25475 1.02853 1.02449 0.94561 1.69907 1.54941 1.40549 0.98451 0.85481 0.78308 0.80081 0.78329 1.21043 1.23096 1.15891 1.23178 0.97468 0.99795 0.95660 1.22597 0.96037 0.97753 0.99388 1.23319 0.99085 0.97002 0.99911 0.93536 0.92803 0.91361 0.90370 0.91136 0.93814 0.92239 0.92534 0.94608 0.88550 0.75797 0.96063 0.90816 0.79558 0.93656 0.90474 0.87381 0.89479 0.91431 0.89065 0.94081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.91 71.98 0.71 -1.86 16 2 C -0.12 -2.14 5.69 30.59 0.17 -1.97 16 3 C -0.10 -2.38 4.03 30.59 0.12 -2.26 16 4 C -0.10 -2.58 2.72 -11.54 -0.03 -2.61 16 5 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 6 C -0.14 -3.74 8.84 71.98 0.64 -3.10 16 7 C 0.50 17.61 7.15 87.66 0.63 18.24 16 8 O -0.60 -25.65 15.91 -3.04 -0.05 -25.69 16 9 N -0.70 -23.56 5.27 -463.06 -2.44 -26.00 16 10 C 0.13 4.66 5.03 86.38 0.43 5.09 16 11 C 0.16 5.44 0.90 4.13 0.00 5.44 16 12 N -0.72 -29.99 4.38 -300.96 -1.32 -31.31 16 13 C -0.21 -11.41 9.74 84.03 0.82 -10.60 16 14 H 0.04 2.74 8.06 -2.91 -0.02 2.72 16 15 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 16 N -0.99 -62.89 13.97 21.65 0.30 -62.59 16 17 Si 0.95 42.73 27.68 68.60 1.90 44.63 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 20 H -0.24 -8.83 6.61 99.48 0.66 -8.17 16 21 C -0.12 -3.01 7.37 31.12 0.23 -2.78 16 22 C -0.12 -3.13 7.99 31.12 0.25 -2.88 16 23 C -0.15 -5.00 7.28 31.12 0.23 -4.77 16 24 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.07 1.20 6.56 -2.39 -0.02 1.18 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.58 7.95 -2.39 -0.02 1.56 16 31 H 0.06 1.55 7.56 -2.39 -0.02 1.53 16 32 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.10 1.90 6.56 -2.39 -0.02 1.89 16 34 H 0.41 12.35 7.54 -92.71 -0.70 11.65 16 35 H 0.02 0.95 8.13 -2.39 -0.02 0.93 16 36 H 0.07 2.36 7.95 -2.39 -0.02 2.34 16 37 H 0.37 14.38 5.80 -92.71 -0.54 13.84 16 38 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 39 H 0.08 1.72 8.09 -2.39 -0.02 1.70 16 40 H 0.11 2.14 7.97 -2.39 -0.02 2.12 16 41 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.09 2.59 8.10 -2.39 -0.02 2.57 16 44 H 0.04 1.63 7.83 -2.39 -0.02 1.61 16 Total: -1.00 -71.91 349.91 2.75 -69.16 By element: Atomic # 1 Polarization: 39.26 SS G_CDS: -0.32 Total: 38.94 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 4.67 Total: -7.14 kcal Atomic # 7 Polarization: -116.44 SS G_CDS: -3.46 Total: -119.90 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.05 Total: -25.69 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 1.90 Total: 44.63 kcal Total: -71.91 2.75 -69.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700144470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.497 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds