Wall clock time and date at job start Mon Mar 30 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 C 1.53005 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56230 * 29.30840 * 4 3 2 6 6 C 1.52995 * 117.49839 * 243.62194 * 4 3 2 7 7 C 1.52997 * 60.00150 * 252.51016 * 6 4 3 8 8 H 1.09000 * 117.50406 * 107.51099 * 7 6 4 9 9 C 1.50704 * 117.49852 * 252.51241 * 7 6 4 10 10 O 1.21286 * 119.99853 * 68.60497 * 9 7 6 11 11 N 1.34772 * 119.99768 * 248.32779 * 9 7 6 12 12 C 1.46500 * 119.99704 * 180.27187 * 11 9 7 13 13 C 1.53005 * 109.47040 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.46757 * 65.00856 * 13 12 11 15 15 C 1.53004 * 109.46988 * 184.99866 * 13 12 11 16 16 N 1.46497 * 109.47390 * 305.00181 * 13 12 11 17 17 C 1.46501 * 120.00063 * 300.00330 * 16 13 12 18 18 C 1.36936 * 119.99640 * 119.99549 * 16 13 12 19 19 H 1.08003 * 120.00214 * 21.94415 * 18 16 13 20 20 C 1.38815 * 119.99868 * 201.93826 * 18 16 13 21 21 N 1.31622 * 119.99917 * 12.71498 * 20 18 16 22 22 Si 1.86801 * 120.00058 * 192.71672 * 20 18 16 23 23 H 1.48502 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47139 * 119.99948 * 22 20 18 25 25 H 1.48494 * 109.47000 * 239.99972 * 22 20 18 26 26 H 1.08998 * 109.47208 * 60.00358 * 1 2 3 27 27 H 1.08996 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47455 * 300.00148 * 1 2 3 29 29 H 1.09000 * 109.47455 * 239.99852 * 2 1 3 30 30 H 1.08998 * 109.47208 * 119.99642 * 2 1 3 31 31 H 1.08997 * 109.47499 * 59.99981 * 3 2 1 32 32 H 1.08998 * 109.47140 * 299.99412 * 3 2 1 33 33 H 1.08997 * 117.50520 * 145.01942 * 6 4 3 34 34 H 1.09002 * 117.50161 * 359.97438 * 6 4 3 35 35 H 0.96997 * 120.00331 * 0.27767 * 11 9 7 36 36 H 1.08995 * 109.47746 * 300.00121 * 12 11 9 37 37 H 1.08999 * 109.47214 * 60.00697 * 12 11 9 38 38 H 1.09003 * 109.46823 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.47281 * 300.00452 * 15 13 12 40 40 H 1.08997 * 109.46563 * 60.00872 * 15 13 12 41 41 H 1.08993 * 109.47193 * 94.30982 * 17 16 13 42 42 H 1.09006 * 109.46537 * 214.31143 * 17 16 13 43 43 H 1.08993 * 109.46846 * 334.30529 * 17 16 13 44 44 H 0.96999 * 119.99710 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2769 2.0453 1.2149 7 6 4.2764 2.7945 -0.1190 8 1 3.6514 3.6842 -0.1964 9 6 5.5689 2.8389 -0.8927 10 8 6.0113 1.8264 -1.3928 11 7 6.2302 4.0048 -1.0335 12 6 7.4836 4.0490 -1.7907 13 6 8.0245 5.4803 -1.7985 14 1 8.2906 5.7735 -0.7830 15 6 9.2648 5.5519 -2.6915 16 7 6.9972 6.3877 -2.3156 17 6 6.4696 6.2014 -3.6696 18 6 6.5302 7.4100 -1.5334 19 1 7.1268 7.7768 -0.7111 20 6 5.2900 7.9750 -1.7973 21 7 4.4580 7.3790 -2.6248 22 14 4.8019 9.5812 -0.9779 23 1 5.9060 10.0443 -0.0993 24 1 4.5348 10.6065 -2.0184 25 1 3.5772 9.3701 -0.1651 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 5.2121 1.5846 1.5331 34 1 3.6520 2.4423 2.0150 35 1 5.8764 4.8145 -0.6335 36 1 8.2133 3.3870 -1.3246 37 1 7.3009 3.7246 -2.8151 38 1 9.6498 6.5716 -2.6974 39 1 10.0290 4.8767 -2.3067 40 1 8.9986 5.2586 -3.7070 41 1 5.5618 5.5998 -3.6261 42 1 6.2410 7.1732 -4.1072 43 1 7.2136 5.6929 -4.2826 44 1 3.5912 7.7736 -2.8089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700474058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:47 Heat of formation + Delta-G solvation = -14.038357 kcal Electronic energy + Delta-G solvation = -21055.643571 eV Core-core repulsion = 18008.738327 eV Total energy + Delta-G solvation = -3046.905245 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.52688 -37.34630 -36.36236 -33.82554 -33.58291 -31.97799 -29.33419 -27.62553 -26.08319 -25.97761 -23.40708 -22.67063 -21.90771 -20.43545 -19.55965 -19.02712 -16.95820 -16.73502 -15.52244 -15.25634 -15.19583 -14.74422 -14.22159 -14.01305 -13.73421 -13.28311 -12.86117 -12.80961 -12.57099 -12.33000 -12.11816 -12.01108 -11.87278 -11.59277 -11.31729 -11.11974 -10.99767 -10.85131 -10.82770 -10.70981 -10.41636 -10.28398 -10.06935 -9.87415 -9.83080 -9.78548 -9.26267 -8.61660 -8.30419 -6.83531 -5.77802 -3.24674 3.01613 3.32489 3.41394 3.42168 3.78621 4.07977 4.43042 4.72388 4.92799 4.96828 5.12181 5.16810 5.32395 5.35432 5.39245 5.51726 5.59331 5.63029 5.71520 5.78514 5.81199 5.86487 5.96879 6.00245 6.09492 6.13943 6.18485 6.20316 6.24641 6.37713 6.40561 6.48216 6.69840 6.81084 6.90992 7.20142 7.38974 7.71509 7.77896 8.29561 8.33036 8.89042 9.17754 9.81089 10.30589 11.25446 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.005050 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.811483 B = 5543.296544 C = 6717.684994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.091 4.091 4 C -0.120 4.120 5 H 0.115 0.885 6 C -0.152 4.152 7 C -0.182 4.182 8 H 0.124 0.876 9 C 0.539 3.461 10 O -0.567 6.567 11 N -0.695 5.695 12 C 0.108 3.892 13 C 0.158 3.842 14 H 0.068 0.932 15 C -0.158 4.158 16 N -0.594 5.594 17 C 0.164 3.836 18 C -0.260 4.260 19 H 0.068 0.932 20 C 0.005 3.995 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.291 1.291 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.415 0.585 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.029 0.971 42 H 0.042 0.958 43 H -0.002 1.002 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.033 -9.749 5.669 11.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.128 4.128 4 C -0.138 4.138 5 H 0.133 0.867 6 C -0.190 4.190 7 C -0.203 4.203 8 H 0.142 0.858 9 C 0.325 3.675 10 O -0.447 6.447 11 N -0.345 5.345 12 C -0.019 4.019 13 C 0.049 3.951 14 H 0.086 0.914 15 C -0.218 4.218 16 N -0.317 5.317 17 C 0.019 3.981 18 C -0.390 4.390 19 H 0.086 0.914 20 C -0.193 4.193 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.218 1.218 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.047 0.953 42 H 0.061 0.939 43 H 0.017 0.983 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.873 -10.353 5.240 11.753 hybrid contribution -0.553 1.467 0.433 1.626 sum -2.426 -8.886 5.673 10.818 Atomic orbital electron populations 1.21782 0.96047 1.01377 1.01837 1.21493 0.95480 0.96737 1.02135 1.21241 0.92235 0.97019 1.02318 1.22378 0.94406 0.95930 1.01132 0.86720 1.23045 1.02795 1.02596 0.90537 1.22317 0.98232 0.98538 1.01246 0.85764 1.19546 0.84467 0.83420 0.80070 1.90612 1.69137 1.34634 1.50358 1.45773 1.24339 1.10785 1.53595 1.21925 0.85160 0.99131 0.95641 1.20643 0.89460 0.87975 0.96998 0.91398 1.22173 0.97816 1.01245 1.00543 1.43958 1.44093 1.31327 1.12362 1.20748 0.94280 0.99323 0.83732 1.19272 0.98796 1.09134 1.11752 0.91380 1.24981 0.95576 0.99290 0.99499 1.70101 1.07869 1.38108 1.38563 0.86245 0.78081 0.83854 0.78691 1.20395 1.21713 1.21793 0.92683 0.92940 0.92846 0.91878 0.91989 0.91732 0.91290 0.88652 0.88174 0.74798 0.93036 0.92522 0.92438 0.93575 0.92965 0.95314 0.93943 0.98335 0.93796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 37.16 0.37 -0.98 16 2 C -0.12 -1.21 5.89 -26.73 -0.16 -1.37 16 3 C -0.09 -1.05 5.50 -26.73 -0.15 -1.19 16 4 C -0.12 -1.65 5.25 -90.62 -0.48 -2.12 16 5 H 0.11 1.73 7.60 -51.93 -0.39 1.33 16 6 C -0.15 -1.97 9.88 -26.74 -0.26 -2.24 16 7 C -0.18 -2.91 5.91 -91.77 -0.54 -3.45 16 8 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 9 C 0.54 10.45 7.61 -10.99 -0.08 10.37 16 10 O -0.57 -12.42 16.26 5.55 0.09 -12.33 16 11 N -0.70 -13.68 5.39 -60.29 -0.32 -14.01 16 12 C 0.11 2.06 4.97 -4.04 -0.02 2.04 16 13 C 0.16 3.05 2.87 -67.93 -0.19 2.86 16 14 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 15 C -0.16 -2.65 9.18 37.16 0.34 -2.31 16 16 N -0.59 -13.82 2.29 -173.48 -0.40 -14.22 16 17 C 0.16 3.93 8.10 59.85 0.49 4.41 16 18 C -0.26 -6.60 9.33 -15.06 -0.14 -6.74 16 19 H 0.07 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.01 0.14 5.10 -17.43 -0.09 0.05 16 21 N -0.90 -24.77 10.64 55.49 0.59 -24.18 16 22 Si 0.90 20.83 29.57 -169.99 -5.03 15.80 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.69 7.88 -51.93 -0.41 0.28 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.10 1.10 8.03 -51.93 -0.42 0.68 16 35 H 0.41 8.57 7.89 -40.82 -0.32 8.25 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 38 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 41 H 0.03 0.76 7.42 -51.93 -0.39 0.37 16 42 H 0.04 1.10 7.20 -51.93 -0.37 0.73 16 43 H 0.00 -0.04 6.43 -51.93 -0.33 -0.37 16 44 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 355.47 15.07 5.36 5.36 Total: -1.00 -28.59 355.47 -8.62 -37.22 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.99 Total: 7.02 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: -0.92 Total: -0.66 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.13 Total: -52.40 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.59 -8.62 -37.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.177 kcal (2) G-P(sol) polarization free energy of solvation -28.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds