Wall clock time and date at job start Mon Mar 30 2020 00:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47018 * 2 1 4 4 C 1.53005 * 109.47105 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.56230 * 29.30840 * 4 3 2 6 6 C 1.52995 * 117.49839 * 243.62194 * 4 3 2 7 7 C 1.52997 * 60.00150 * 252.51016 * 6 4 3 8 8 H 1.09000 * 117.50406 * 107.51099 * 7 6 4 9 9 C 1.50704 * 117.49852 * 252.51241 * 7 6 4 10 10 O 1.21286 * 119.99853 * 68.60497 * 9 7 6 11 11 N 1.34772 * 119.99768 * 248.32779 * 9 7 6 12 12 C 1.46500 * 119.99704 * 180.27187 * 11 9 7 13 13 C 1.53005 * 109.47040 * 179.97438 * 12 11 9 14 14 H 1.08997 * 109.46757 * 65.00856 * 13 12 11 15 15 C 1.53004 * 109.46988 * 184.99866 * 13 12 11 16 16 N 1.46497 * 109.47390 * 305.00181 * 13 12 11 17 17 C 1.46501 * 120.00063 * 300.00330 * 16 13 12 18 18 C 1.36936 * 119.99640 * 119.99549 * 16 13 12 19 19 H 1.08003 * 120.00214 * 21.94415 * 18 16 13 20 20 C 1.38815 * 119.99868 * 201.93826 * 18 16 13 21 21 N 1.31622 * 119.99917 * 12.71498 * 20 18 16 22 22 Si 1.86801 * 120.00058 * 192.71672 * 20 18 16 23 23 H 1.48502 * 109.47149 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47139 * 119.99948 * 22 20 18 25 25 H 1.48494 * 109.47000 * 239.99972 * 22 20 18 26 26 H 1.08998 * 109.47208 * 60.00358 * 1 2 3 27 27 H 1.08996 * 109.46954 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47455 * 300.00148 * 1 2 3 29 29 H 1.09000 * 109.47455 * 239.99852 * 2 1 3 30 30 H 1.08998 * 109.47208 * 119.99642 * 2 1 3 31 31 H 1.08997 * 109.47499 * 59.99981 * 3 2 1 32 32 H 1.08998 * 109.47140 * 299.99412 * 3 2 1 33 33 H 1.08997 * 117.50520 * 145.01942 * 6 4 3 34 34 H 1.09002 * 117.50161 * 359.97438 * 6 4 3 35 35 H 0.96997 * 120.00331 * 0.27767 * 11 9 7 36 36 H 1.08995 * 109.47746 * 300.00121 * 12 11 9 37 37 H 1.08999 * 109.47214 * 60.00697 * 12 11 9 38 38 H 1.09003 * 109.46823 * 179.97438 * 15 13 12 39 39 H 1.08994 * 109.47281 * 300.00452 * 15 13 12 40 40 H 1.08997 * 109.46563 * 60.00872 * 15 13 12 41 41 H 1.08993 * 109.47193 * 94.30982 * 17 16 13 42 42 H 1.09006 * 109.46537 * 214.31143 * 17 16 13 43 43 H 1.08993 * 109.46846 * 334.30529 * 17 16 13 44 44 H 0.96999 * 119.99710 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 4.0401 0.5852 -0.4823 6 6 4.2769 2.0453 1.2149 7 6 4.2764 2.7945 -0.1190 8 1 3.6514 3.6842 -0.1964 9 6 5.5689 2.8389 -0.8927 10 8 6.0113 1.8264 -1.3928 11 7 6.2302 4.0048 -1.0335 12 6 7.4836 4.0490 -1.7907 13 6 8.0245 5.4803 -1.7985 14 1 8.2906 5.7735 -0.7830 15 6 9.2648 5.5519 -2.6915 16 7 6.9972 6.3877 -2.3156 17 6 6.4696 6.2014 -3.6696 18 6 6.5302 7.4100 -1.5334 19 1 7.1268 7.7768 -0.7111 20 6 5.2900 7.9750 -1.7973 21 7 4.4580 7.3790 -2.6248 22 14 4.8019 9.5812 -0.9779 23 1 5.9060 10.0443 -0.0993 24 1 4.5348 10.6065 -2.0184 25 1 3.5772 9.3701 -0.1651 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 5.2121 1.5846 1.5331 34 1 3.6520 2.4423 2.0150 35 1 5.8764 4.8145 -0.6335 36 1 8.2133 3.3870 -1.3246 37 1 7.3009 3.7246 -2.8151 38 1 9.6498 6.5716 -2.6974 39 1 10.0290 4.8767 -2.3067 40 1 8.9986 5.2586 -3.7070 41 1 5.5618 5.5998 -3.6261 42 1 6.2410 7.1732 -4.1072 43 1 7.2136 5.6929 -4.2826 44 1 3.5912 7.7736 -2.8089 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700474058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:47 Heat of formation + Delta-G solvation = -29.367097 kcal Electronic energy + Delta-G solvation = -21056.308276 eV Core-core repulsion = 18008.738327 eV Total energy + Delta-G solvation = -3047.569949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.98009 -38.78155 -37.84918 -35.33743 -34.72349 -33.71758 -31.12582 -28.61924 -28.01410 -27.35649 -25.08348 -24.16693 -22.77956 -21.47870 -21.16532 -20.55220 -18.84639 -18.15757 -17.15683 -16.93901 -16.31198 -16.06047 -15.73690 -15.42007 -15.16168 -14.68052 -14.48043 -14.15535 -13.86860 -13.71665 -13.57944 -13.25425 -13.08497 -12.92542 -12.84162 -12.61649 -12.49086 -12.28847 -12.18559 -12.06196 -11.94309 -11.74209 -11.67616 -11.48498 -11.18248 -10.98206 -10.73401 -10.60311 -9.90677 -8.77923 -7.77144 -5.25457 1.48325 1.52636 1.56256 1.60360 2.35917 2.53658 2.87166 3.36830 3.61698 3.69106 3.78629 3.89554 4.05876 4.18687 4.27489 4.31101 4.37102 4.41461 4.60602 4.62661 4.69773 4.79432 4.83125 4.84978 4.88206 4.93237 5.01079 5.07448 5.08068 5.19861 5.26588 5.29948 5.36321 5.40510 5.47560 5.51719 5.63509 5.71048 5.74853 6.35863 6.70547 7.18697 7.32509 7.89994 8.35734 9.24889 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015711 B = 0.005050 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.811483 B = 5543.296544 C = 6717.684994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.087 4.087 4 C -0.114 4.114 5 H 0.099 0.901 6 C -0.127 4.127 7 C -0.206 4.206 8 H 0.120 0.880 9 C 0.534 3.466 10 O -0.597 6.597 11 N -0.699 5.699 12 C 0.113 3.887 13 C 0.157 3.843 14 H 0.074 0.926 15 C -0.149 4.149 16 N -0.603 5.603 17 C 0.183 3.817 18 C -0.259 4.259 19 H 0.074 0.926 20 C -0.042 4.042 21 N -0.931 5.931 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.300 1.300 25 H -0.293 1.293 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.128 0.872 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.038 0.962 38 H 0.055 0.945 39 H 0.077 0.923 40 H 0.047 0.953 41 H -0.002 1.002 42 H 0.015 0.985 43 H 0.022 0.978 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.657 -10.054 7.355 12.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.124 4.124 4 C -0.133 4.133 5 H 0.117 0.883 6 C -0.164 4.164 7 C -0.227 4.227 8 H 0.138 0.862 9 C 0.322 3.678 10 O -0.480 6.480 11 N -0.347 5.347 12 C -0.013 4.013 13 C 0.050 3.950 14 H 0.092 0.908 15 C -0.208 4.208 16 N -0.326 5.326 17 C 0.038 3.962 18 C -0.389 4.389 19 H 0.092 0.908 20 C -0.238 4.238 21 N -0.578 5.578 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.228 1.228 25 H -0.221 1.221 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.016 0.984 42 H 0.034 0.966 43 H 0.040 0.960 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.460 -10.663 6.944 12.808 hybrid contribution -0.601 1.516 -0.096 1.633 sum -2.061 -9.147 6.848 11.611 Atomic orbital electron populations 1.21770 0.94987 1.02159 1.01971 1.21476 0.96374 0.95552 1.02236 1.21249 0.90514 0.98217 1.02456 1.22431 0.95684 0.93827 1.01323 0.88299 1.23181 1.02967 1.00330 0.89903 1.22262 0.96971 0.99714 1.03755 0.86173 1.20119 0.85243 0.82739 0.79719 1.90585 1.70231 1.35457 1.51704 1.45870 1.24630 1.10713 1.53527 1.21870 0.85442 0.99181 0.94797 1.20835 0.89275 0.87094 0.97810 0.90783 1.22065 0.97091 1.01979 0.99709 1.44091 1.44677 1.31873 1.11941 1.20402 0.93787 0.97363 0.84690 1.19559 0.98565 1.09318 1.11473 0.90800 1.25605 0.95842 1.01879 1.00451 1.70260 1.07963 1.39284 1.40268 0.85314 0.77744 0.80417 0.77561 1.19201 1.22751 1.22059 0.93168 0.91871 0.92112 0.92661 0.91056 0.90249 0.92480 0.88553 0.85388 0.75385 0.91338 0.94363 0.92632 0.90442 0.93413 0.98359 0.96600 0.95994 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.91 71.98 0.71 -1.69 16 2 C -0.12 -2.20 5.89 30.59 0.18 -2.02 16 3 C -0.09 -1.90 5.50 30.60 0.17 -1.73 16 4 C -0.11 -3.04 5.25 -10.79 -0.06 -3.10 16 5 H 0.10 2.98 7.60 -2.38 -0.02 2.96 16 6 C -0.13 -3.04 9.88 30.59 0.30 -2.73 16 7 C -0.21 -6.51 5.91 -11.54 -0.07 -6.58 16 8 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 9 C 0.53 20.87 7.61 87.66 0.67 21.53 16 10 O -0.60 -26.42 16.26 -3.05 -0.05 -26.47 16 11 N -0.70 -27.57 5.39 -463.05 -2.49 -30.07 16 12 C 0.11 4.25 4.97 86.38 0.43 4.68 16 13 C 0.16 5.86 2.87 45.00 0.13 5.99 16 14 H 0.07 2.69 7.86 -2.39 -0.02 2.67 16 15 C -0.15 -4.66 9.18 71.98 0.66 -4.00 16 16 N -0.60 -27.82 2.29 -702.78 -1.61 -29.43 16 17 C 0.18 8.89 8.10 127.77 1.04 9.93 16 18 C -0.26 -13.02 9.33 84.03 0.78 -12.24 16 19 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 20 C -0.04 -2.20 5.10 84.86 0.43 -1.76 16 21 N -0.93 -52.18 10.64 21.65 0.23 -51.95 16 22 Si 0.96 42.82 29.57 68.60 2.03 44.85 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.50 7.88 -2.39 -0.02 1.49 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.13 2.38 8.03 -2.39 -0.02 2.36 16 35 H 0.41 17.03 7.89 -92.71 -0.73 16.30 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.04 1.58 7.84 -2.39 -0.02 1.56 16 38 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.93 16 40 H 0.05 1.53 6.66 -2.39 -0.02 1.51 16 41 H 0.00 -0.10 7.42 -2.39 -0.02 -0.12 16 42 H 0.02 0.82 7.20 -2.38 -0.02 0.80 16 43 H 0.02 0.94 6.43 -2.39 -0.02 0.92 16 44 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -61.46 355.47 3.71 -57.75 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.22 Total: 29.03 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.38 Total: 6.28 kcal Atomic # 7 Polarization: -107.57 SS G_CDS: -3.87 Total: -111.44 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -61.46 3.71 -57.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.385 kcal (2) G-P(sol) polarization free energy of solvation -61.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds