Wall clock time and date at job start Mon Mar 30 2020 00:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47443 * 2 1 4 4 C 1.53001 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.56276 * 29.31654 * 4 3 2 6 6 C 1.53003 * 117.50083 * 243.61987 * 4 3 2 7 7 C 1.52999 * 60.00146 * 252.51660 * 6 4 3 8 8 H 1.08999 * 117.50039 * 107.51282 * 7 6 4 9 9 C 1.50699 * 117.49736 * 252.51180 * 7 6 4 10 10 O 1.21274 * 120.00262 * 68.61006 * 9 7 6 11 11 N 1.34781 * 119.99992 * 248.60646 * 9 7 6 12 12 C 1.46494 * 120.00150 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47378 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47416 * 295.00887 * 13 12 11 15 15 C 1.53001 * 109.47439 * 174.99996 * 13 12 11 16 16 N 1.46503 * 109.46864 * 55.00342 * 13 12 11 17 17 C 1.46496 * 120.00242 * 59.99909 * 16 13 12 18 18 C 1.36942 * 119.99953 * 240.00077 * 16 13 12 19 19 H 1.08001 * 119.99919 * 342.15263 * 18 16 13 20 20 C 1.38811 * 119.99999 * 161.87189 * 18 16 13 21 21 N 1.31620 * 119.99847 * 344.23623 * 20 18 16 22 22 Si 1.86797 * 119.99977 * 164.23225 * 20 18 16 23 23 H 1.48506 * 109.47086 * 60.00439 * 22 20 18 24 24 H 1.48503 * 109.47344 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47435 * 300.00330 * 22 20 18 26 26 H 1.09005 * 109.46849 * 59.99782 * 1 2 3 27 27 H 1.08993 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46965 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.47436 * 240.00151 * 2 1 3 30 30 H 1.09006 * 109.47370 * 120.00203 * 2 1 3 31 31 H 1.09003 * 109.46848 * 60.00442 * 3 2 1 32 32 H 1.08996 * 109.47415 * 300.00126 * 3 2 1 33 33 H 1.08998 * 117.49711 * 145.02118 * 6 4 3 34 34 H 1.08998 * 117.49535 * 0.02562 * 6 4 3 35 35 H 0.97005 * 119.99529 * 0.02562 * 11 9 7 36 36 H 1.09006 * 109.46788 * 60.00698 * 12 11 9 37 37 H 1.09002 * 109.47593 * 300.00518 * 12 11 9 38 38 H 1.08995 * 109.46850 * 300.00219 * 15 13 12 39 39 H 1.09000 * 109.46629 * 60.00628 * 15 13 12 40 40 H 1.09004 * 109.46814 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47357 * 264.86050 * 17 16 13 42 42 H 1.09000 * 109.46963 * 24.86060 * 17 16 13 43 43 H 1.08997 * 109.47300 * 144.85530 * 17 16 13 44 44 H 0.97009 * 119.99534 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0405 0.5849 -0.4805 6 6 4.2761 2.0455 1.2167 7 6 4.2766 2.7944 -0.1175 8 1 3.6517 3.6840 -0.1956 9 6 5.5697 2.8385 -0.8902 10 8 6.0125 1.8260 -1.3898 11 7 6.2341 4.0033 -1.0261 12 6 7.4914 4.0461 -1.7767 13 6 8.0358 5.4759 -1.7787 14 1 7.3513 6.1246 -2.3253 15 6 9.4085 5.4982 -2.4541 16 7 8.1627 5.9521 -0.3990 17 6 9.0323 5.2436 0.5433 18 6 7.4684 7.0594 0.0097 19 1 7.0649 7.7441 -0.7215 20 6 7.2782 7.2986 1.3638 21 7 7.4798 6.3346 2.2370 22 14 6.7362 8.9885 1.9466 23 1 5.4257 9.3262 1.3352 24 1 6.6062 8.9839 3.4259 25 1 7.7462 9.9991 1.5422 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6768 1.9564 -0.8899 33 1 5.2110 1.5847 1.5356 34 1 3.6506 2.4420 2.0164 35 1 5.8801 4.8130 -0.6262 36 1 7.3133 3.7234 -2.8026 37 1 8.2174 3.3819 -1.3078 38 1 10.0929 4.8496 -1.9074 39 1 9.3140 5.1440 -3.4807 40 1 9.7964 6.5168 -2.4551 41 1 8.4403 4.5333 1.1204 42 1 9.8058 4.7087 -0.0078 43 1 9.4979 5.9616 1.2183 44 1 7.3472 6.5019 3.1833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700474059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:50 Heat of formation + Delta-G solvation = -12.651917 kcal Electronic energy + Delta-G solvation = -21033.760233 eV Core-core repulsion = 17986.915109 eV Total energy + Delta-G solvation = -3046.845124 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.52616 -37.34617 -36.37164 -33.83996 -33.59514 -31.97602 -29.32226 -27.64691 -26.08414 -25.98513 -23.40008 -22.65887 -21.91980 -20.42224 -19.56769 -19.02494 -16.94013 -16.75579 -15.54048 -15.28247 -15.17791 -14.65551 -14.38815 -13.90396 -13.76495 -13.33340 -12.84163 -12.79522 -12.58694 -12.30244 -12.17249 -11.98411 -11.88440 -11.60239 -11.33139 -11.11068 -10.99552 -10.87630 -10.78101 -10.72205 -10.41246 -10.32360 -10.03400 -9.86334 -9.82954 -9.78983 -9.26447 -8.58842 -8.31508 -6.87146 -5.76899 -3.19750 3.03481 3.34399 3.41681 3.42505 3.72962 4.15324 4.44386 4.71163 4.93359 4.94732 5.13880 5.16322 5.31573 5.35369 5.40472 5.49632 5.55110 5.61385 5.66905 5.74869 5.83201 5.91353 5.95736 6.00320 6.09644 6.14173 6.16263 6.20010 6.23900 6.37439 6.39978 6.47570 6.69893 6.79997 6.90416 7.19130 7.40680 7.69671 7.78802 8.28238 8.32042 8.87937 9.18269 9.82566 10.30548 11.26674 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.004780 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.173297 B = 5855.748793 C = 6965.807907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.124 4.124 5 H 0.115 0.885 6 C -0.143 4.143 7 C -0.182 4.182 8 H 0.119 0.881 9 C 0.539 3.461 10 O -0.566 6.566 11 N -0.696 5.696 12 C 0.107 3.893 13 C 0.158 3.842 14 H 0.068 0.932 15 C -0.158 4.158 16 N -0.595 5.595 17 C 0.164 3.836 18 C -0.262 4.262 19 H 0.069 0.931 20 C 0.005 3.995 21 N -0.901 5.901 22 Si 0.901 3.099 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.415 0.585 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.028 0.972 42 H -0.002 1.002 43 H 0.043 0.957 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.245 -7.652 -4.317 12.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.127 4.127 4 C -0.143 4.143 5 H 0.133 0.867 6 C -0.181 4.181 7 C -0.203 4.203 8 H 0.137 0.863 9 C 0.325 3.675 10 O -0.447 6.447 11 N -0.346 5.346 12 C -0.019 4.019 13 C 0.050 3.950 14 H 0.086 0.914 15 C -0.218 4.218 16 N -0.318 5.318 17 C 0.020 3.980 18 C -0.391 4.391 19 H 0.087 0.913 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.731 3.269 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.212 1.212 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.119 0.881 35 H 0.252 0.748 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.920 -8.319 -4.466 12.324 hybrid contribution -0.324 1.450 0.703 1.644 sum -8.244 -6.869 -3.762 11.372 Atomic orbital electron populations 1.21782 0.96075 1.01410 1.01743 1.21499 0.95420 0.96763 1.02242 1.21228 0.92333 0.97020 1.02083 1.22409 0.94248 0.95833 1.01804 0.86748 1.23019 1.02802 1.01885 0.90354 1.22240 0.97961 0.98041 1.02063 0.86300 1.19562 0.84764 0.83379 0.79822 1.90611 1.69501 1.34344 1.50234 1.45782 1.23676 1.11156 1.53974 1.21933 0.85549 0.99960 0.94447 1.20626 0.94822 0.91781 0.87810 0.91413 1.22176 0.98843 1.01837 0.98924 1.43972 1.50832 1.31354 1.05606 1.20751 0.90887 0.95496 0.90876 1.19195 1.29986 0.98916 0.91014 0.91338 1.24884 1.00572 0.97454 0.96485 1.70114 1.53102 1.29936 1.01395 0.86398 0.78425 0.84537 0.77510 1.21049 1.21743 1.21245 0.92815 0.92916 0.92802 0.91907 0.91855 0.91696 0.91591 0.88445 0.88087 0.74840 0.92977 0.92544 0.92967 0.93572 0.92410 0.95404 0.98345 0.93796 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.16 5.89 -26.73 -0.16 -1.32 16 3 C -0.09 -0.97 5.50 -26.73 -0.15 -1.11 16 4 C -0.12 -1.69 5.25 -90.62 -0.48 -2.17 16 5 H 0.11 1.71 7.60 -51.93 -0.39 1.32 16 6 C -0.14 -2.08 9.88 -26.73 -0.26 -2.34 16 7 C -0.18 -2.87 5.91 -91.77 -0.54 -3.42 16 8 H 0.12 1.72 8.14 -51.93 -0.42 1.30 16 9 C 0.54 10.39 7.61 -10.98 -0.08 10.30 16 10 O -0.57 -12.35 16.26 5.56 0.09 -12.26 16 11 N -0.70 -13.62 5.39 -60.30 -0.32 -13.95 16 12 C 0.11 2.05 4.97 -4.05 -0.02 2.03 16 13 C 0.16 3.06 2.87 -67.93 -0.19 2.86 16 14 H 0.07 1.29 7.83 -51.93 -0.41 0.88 16 15 C -0.16 -2.65 9.18 37.16 0.34 -2.31 16 16 N -0.59 -13.82 2.29 -173.49 -0.40 -14.22 16 17 C 0.16 3.94 8.10 59.84 0.48 4.43 16 18 C -0.26 -6.65 9.37 -15.06 -0.14 -6.79 16 19 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 20 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 21 N -0.90 -24.76 10.58 55.49 0.59 -24.17 16 22 Si 0.90 20.89 29.58 -169.99 -5.03 15.86 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.10 1.30 8.03 -51.93 -0.42 0.88 16 35 H 0.41 8.51 7.89 -40.82 -0.32 8.19 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 1.16 7.84 -51.93 -0.41 0.75 16 38 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.03 0.73 7.46 -51.93 -0.39 0.34 16 42 H 0.00 -0.04 6.44 -51.93 -0.33 -0.38 16 43 H 0.04 1.14 7.08 -51.93 -0.37 0.77 16 44 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 355.30 15.07 5.35 5.35 Total: -1.00 -28.59 355.30 -8.62 -37.22 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.99 Total: 6.85 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -0.92 Total: -0.69 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.14 Total: -52.34 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.09 Total: -12.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.59 -8.62 -37.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.564 kcal (2) G-P(sol) polarization free energy of solvation -28.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds