Wall clock time and date at job start Mon Mar 30 2020 00:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47443 * 2 1 4 4 C 1.53001 * 109.47029 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.56276 * 29.31654 * 4 3 2 6 6 C 1.53003 * 117.50083 * 243.61987 * 4 3 2 7 7 C 1.52999 * 60.00146 * 252.51660 * 6 4 3 8 8 H 1.08999 * 117.50039 * 107.51282 * 7 6 4 9 9 C 1.50699 * 117.49736 * 252.51180 * 7 6 4 10 10 O 1.21274 * 120.00262 * 68.61006 * 9 7 6 11 11 N 1.34781 * 119.99992 * 248.60646 * 9 7 6 12 12 C 1.46494 * 120.00150 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47378 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.47416 * 295.00887 * 13 12 11 15 15 C 1.53001 * 109.47439 * 174.99996 * 13 12 11 16 16 N 1.46503 * 109.46864 * 55.00342 * 13 12 11 17 17 C 1.46496 * 120.00242 * 59.99909 * 16 13 12 18 18 C 1.36942 * 119.99953 * 240.00077 * 16 13 12 19 19 H 1.08001 * 119.99919 * 342.15263 * 18 16 13 20 20 C 1.38811 * 119.99999 * 161.87189 * 18 16 13 21 21 N 1.31620 * 119.99847 * 344.23623 * 20 18 16 22 22 Si 1.86797 * 119.99977 * 164.23225 * 20 18 16 23 23 H 1.48506 * 109.47086 * 60.00439 * 22 20 18 24 24 H 1.48503 * 109.47344 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47435 * 300.00330 * 22 20 18 26 26 H 1.09005 * 109.46849 * 59.99782 * 1 2 3 27 27 H 1.08993 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46965 * 299.99956 * 1 2 3 29 29 H 1.09000 * 109.47436 * 240.00151 * 2 1 3 30 30 H 1.09006 * 109.47370 * 120.00203 * 2 1 3 31 31 H 1.09003 * 109.46848 * 60.00442 * 3 2 1 32 32 H 1.08996 * 109.47415 * 300.00126 * 3 2 1 33 33 H 1.08998 * 117.49711 * 145.02118 * 6 4 3 34 34 H 1.08998 * 117.49535 * 0.02562 * 6 4 3 35 35 H 0.97005 * 119.99529 * 0.02562 * 11 9 7 36 36 H 1.09006 * 109.46788 * 60.00698 * 12 11 9 37 37 H 1.09002 * 109.47593 * 300.00518 * 12 11 9 38 38 H 1.08995 * 109.46850 * 300.00219 * 15 13 12 39 39 H 1.09000 * 109.46629 * 60.00628 * 15 13 12 40 40 H 1.09004 * 109.46814 * 180.02562 * 15 13 12 41 41 H 1.08997 * 109.47357 * 264.86050 * 17 16 13 42 42 H 1.09000 * 109.46963 * 24.86060 * 17 16 13 43 43 H 1.08997 * 109.47300 * 144.85530 * 17 16 13 44 44 H 0.97009 * 119.99534 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 1 4.0405 0.5849 -0.4805 6 6 4.2761 2.0455 1.2167 7 6 4.2766 2.7944 -0.1175 8 1 3.6517 3.6840 -0.1956 9 6 5.5697 2.8385 -0.8902 10 8 6.0125 1.8260 -1.3898 11 7 6.2341 4.0033 -1.0261 12 6 7.4914 4.0461 -1.7767 13 6 8.0358 5.4759 -1.7787 14 1 7.3513 6.1246 -2.3253 15 6 9.4085 5.4982 -2.4541 16 7 8.1627 5.9521 -0.3990 17 6 9.0323 5.2436 0.5433 18 6 7.4684 7.0594 0.0097 19 1 7.0649 7.7441 -0.7215 20 6 7.2782 7.2986 1.3638 21 7 7.4798 6.3346 2.2370 22 14 6.7362 8.9885 1.9466 23 1 5.4257 9.3262 1.3352 24 1 6.6062 8.9839 3.4259 25 1 7.7462 9.9991 1.5422 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8901 32 1 1.6768 1.9564 -0.8899 33 1 5.2110 1.5847 1.5356 34 1 3.6506 2.4420 2.0164 35 1 5.8801 4.8130 -0.6262 36 1 7.3133 3.7234 -2.8026 37 1 8.2174 3.3819 -1.3078 38 1 10.0929 4.8496 -1.9074 39 1 9.3140 5.1440 -3.4807 40 1 9.7964 6.5168 -2.4551 41 1 8.4403 4.5333 1.1204 42 1 9.8058 4.7087 -0.0078 43 1 9.4979 5.9616 1.2183 44 1 7.3472 6.5019 3.1833 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700474059.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:49 Heat of formation + Delta-G solvation = -27.908417 kcal Electronic energy + Delta-G solvation = -21034.421804 eV Core-core repulsion = 17986.915109 eV Total energy + Delta-G solvation = -3047.506696 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.98549 -38.78433 -37.85424 -35.34679 -34.71113 -33.71168 -31.11155 -28.60675 -28.01280 -27.36003 -25.07996 -24.18709 -22.76664 -21.46473 -21.16477 -20.54986 -18.83674 -18.16999 -17.17799 -16.92786 -16.20540 -16.09790 -15.78501 -15.44933 -15.16197 -14.60006 -14.48479 -14.15588 -13.89774 -13.69111 -13.60468 -13.24400 -13.08102 -12.92395 -12.81621 -12.55909 -12.51050 -12.27981 -12.19042 -12.12281 -11.93440 -11.71253 -11.66135 -11.50026 -11.16205 -10.99509 -10.73285 -10.56497 -9.91215 -8.81205 -7.76110 -5.20194 1.50515 1.54206 1.56291 1.58886 2.31761 2.55023 2.90920 3.37290 3.61680 3.69293 3.79938 3.89593 4.06085 4.19457 4.21385 4.30382 4.38129 4.41533 4.60767 4.64333 4.69923 4.79384 4.82724 4.85621 4.88652 4.94347 5.00597 5.07026 5.08013 5.21247 5.26444 5.31676 5.37467 5.41963 5.47797 5.53106 5.63162 5.70303 5.76131 6.34838 6.69889 7.19256 7.31936 7.91585 8.35978 9.25953 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.017310 B = 0.004780 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.173297 B = 5855.748793 C = 6965.807907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.084 4.084 4 C -0.105 4.105 5 H 0.099 0.901 6 C -0.143 4.143 7 C -0.198 4.198 8 H 0.135 0.865 9 C 0.533 3.467 10 O -0.596 6.596 11 N -0.699 5.699 12 C 0.113 3.887 13 C 0.157 3.843 14 H 0.074 0.926 15 C -0.149 4.149 16 N -0.603 5.603 17 C 0.183 3.817 18 C -0.262 4.262 19 H 0.076 0.924 20 C -0.043 4.043 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.274 1.274 24 H -0.301 1.301 25 H -0.287 1.287 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.410 0.590 36 H 0.069 0.931 37 H 0.038 0.962 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.054 0.946 41 H -0.002 1.002 42 H 0.021 0.979 43 H 0.017 0.983 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -7.260 -5.256 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.122 4.122 4 C -0.124 4.124 5 H 0.117 0.883 6 C -0.181 4.181 7 C -0.219 4.219 8 H 0.153 0.847 9 C 0.321 3.679 10 O -0.479 6.479 11 N -0.348 5.348 12 C -0.013 4.013 13 C 0.050 3.950 14 H 0.092 0.908 15 C -0.209 4.209 16 N -0.326 5.326 17 C 0.038 3.962 18 C -0.391 4.391 19 H 0.093 0.907 20 C -0.239 4.239 21 N -0.576 5.576 22 Si 0.789 3.211 23 H -0.200 1.200 24 H -0.228 1.228 25 H -0.213 1.213 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.140 0.860 35 H 0.246 0.754 36 H 0.087 0.913 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.016 0.984 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.162 -7.920 -5.446 13.279 hybrid contribution 0.100 1.291 0.928 1.593 sum -9.062 -6.629 -4.518 12.103 Atomic orbital electron populations 1.21760 0.94779 1.02116 1.02115 1.21492 0.96521 0.95776 1.02100 1.21248 0.89883 0.98148 1.02875 1.22442 0.95936 0.93810 1.00182 0.88335 1.23086 1.02637 1.01647 0.90709 1.22301 0.96915 0.99961 1.02688 0.84747 1.20148 0.85624 0.82688 0.79459 1.90585 1.70594 1.35149 1.51590 1.45875 1.23815 1.11130 1.53967 1.21875 0.85095 0.99316 0.95037 1.20823 0.96613 0.91689 0.85864 0.90768 1.22068 0.96665 1.01779 1.00345 1.44106 1.50466 1.31073 1.06939 1.20406 0.90893 0.94194 0.90689 1.19506 1.29011 0.99446 0.91165 0.90652 1.25513 1.01505 1.00061 0.96791 1.70276 1.54859 1.31391 1.01050 0.85466 0.78290 0.81044 0.76299 1.19995 1.22778 1.21335 0.92549 0.92109 0.92324 0.92335 0.91831 0.90565 0.91068 0.90240 0.86006 0.75366 0.91334 0.94331 0.93413 0.90446 0.92652 0.98393 0.96039 0.96454 0.94580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 71.98 0.71 -1.42 16 2 C -0.12 -2.11 5.89 30.59 0.18 -1.93 16 3 C -0.08 -1.66 5.50 30.60 0.17 -1.49 16 4 C -0.10 -2.77 5.25 -10.79 -0.06 -2.83 16 5 H 0.10 2.95 7.60 -2.39 -0.02 2.93 16 6 C -0.14 -4.08 9.88 30.60 0.30 -3.78 16 7 C -0.20 -6.14 5.91 -11.54 -0.07 -6.21 16 8 H 0.13 3.72 8.14 -2.39 -0.02 3.70 16 9 C 0.53 20.62 7.61 87.66 0.67 21.28 16 10 O -0.60 -26.26 16.26 -3.01 -0.05 -26.30 16 11 N -0.70 -27.28 5.39 -463.07 -2.49 -29.77 16 12 C 0.11 4.21 4.97 86.38 0.43 4.64 16 13 C 0.16 5.85 2.87 44.99 0.13 5.97 16 14 H 0.07 2.68 7.83 -2.39 -0.02 2.66 16 15 C -0.15 -4.66 9.18 71.98 0.66 -4.00 16 16 N -0.60 -27.72 2.29 -702.79 -1.61 -29.33 16 17 C 0.18 8.89 8.10 127.77 1.04 9.93 16 18 C -0.26 -13.11 9.37 84.03 0.79 -12.32 16 19 H 0.08 3.63 7.79 -2.91 -0.02 3.61 16 20 C -0.04 -2.24 5.06 84.86 0.43 -1.81 16 21 N -0.93 -51.89 10.58 21.65 0.23 -51.66 16 22 Si 0.96 42.81 29.58 68.60 2.03 44.84 16 23 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 25 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.08 1.36 7.87 -2.39 -0.02 1.34 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.12 2.94 8.03 -2.39 -0.02 2.92 16 35 H 0.41 16.78 7.89 -92.70 -0.73 16.05 16 36 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.04 1.58 7.84 -2.39 -0.02 1.56 16 38 H 0.05 1.52 6.66 -2.39 -0.02 1.51 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 41 H 0.00 -0.12 7.46 -2.39 -0.02 -0.14 16 42 H 0.02 0.92 6.44 -2.39 -0.02 0.90 16 43 H 0.02 0.90 7.08 -2.39 -0.02 0.88 16 44 H 0.24 13.58 8.31 -92.70 -0.77 12.81 16 Total: -1.00 -61.05 355.30 3.70 -57.34 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.22 Total: 28.84 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 5.38 Total: 6.05 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -3.88 Total: -110.77 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.30 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -61.05 3.70 -57.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700474059.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.435 kcal (2) G-P(sol) polarization free energy of solvation -61.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds