Wall clock time and date at job start Mon Mar 30 2020 00:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 C 1.52996 * 109.47141 * 120.00020 * 2 1 3 5 5 C 1.50702 * 109.47159 * 174.99728 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47288 * 275.00460 * 8 7 5 10 10 C 1.52997 * 109.47394 * 299.99753 * 9 8 7 11 11 C 1.53005 * 109.46837 * 300.00212 * 10 9 8 12 12 N 1.46504 * 109.46805 * 179.97438 * 11 10 9 13 13 C 1.36937 * 119.99818 * 84.99985 * 12 11 10 14 14 H 1.08001 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99995 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99937 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47105 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46705 * 120.00577 * 17 15 13 20 20 H 1.48500 * 109.46759 * 240.00067 * 17 15 13 21 21 C 1.52997 * 109.47302 * 59.99731 * 11 10 9 22 22 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 23 23 H 1.09001 * 109.47091 * 300.00599 * 1 2 3 24 24 H 1.09001 * 109.47039 * 59.99430 * 1 2 3 25 25 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47436 * 240.00095 * 2 1 3 27 27 H 1.09005 * 109.47435 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47522 * 300.00274 * 3 2 1 29 29 H 1.09007 * 109.47141 * 60.00277 * 3 2 1 30 30 H 1.09004 * 109.47066 * 54.99931 * 4 2 1 31 31 H 1.08994 * 109.47405 * 294.99761 * 4 2 1 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 34 34 H 1.09006 * 109.47495 * 60.00048 * 9 8 7 35 35 H 1.09007 * 109.47320 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47567 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.46943 * 59.99679 * 10 9 8 38 38 H 1.08998 * 109.46918 * 299.99482 * 11 10 9 39 39 H 0.96995 * 119.99891 * 264.99692 * 12 11 10 40 40 H 0.97000 * 119.99735 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47024 * 179.97438 * 21 11 10 42 42 H 1.09007 * 109.47320 * 59.99736 * 21 11 10 43 43 H 1.08993 * 109.47607 * 179.97438 * 22 8 7 44 44 H 1.09000 * 109.47556 * 300.00768 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8294 1.1888 6 8 4.1451 -0.3741 0.2403 7 7 4.2153 -1.4269 2.1918 8 6 5.6758 -1.5267 2.1361 9 6 6.0719 -2.7647 1.3290 10 6 5.5006 -4.0153 2.0000 11 6 6.0585 -4.1321 3.4200 12 7 5.5109 -5.3294 4.0627 13 6 6.1097 -6.5454 3.8683 14 1 6.9854 -6.6220 3.2408 15 6 5.5912 -7.6798 4.4777 16 7 4.5237 -7.5865 5.2421 17 14 6.4077 -9.3388 4.2119 18 1 7.5815 -9.1751 3.3172 19 1 6.8540 -9.8857 5.5184 20 1 5.4367 -10.2741 3.5894 21 6 5.6623 -2.8942 4.2270 22 6 6.2337 -1.6435 3.5559 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6053 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.7330 -1.7908 2.9506 33 1 6.0829 -0.6358 1.6579 34 1 5.6746 -2.6815 0.3174 35 1 7.1587 -2.8388 1.2871 36 1 5.7824 -4.8973 1.4248 37 1 4.4140 -3.9410 2.0416 38 1 7.1451 -4.2064 3.3784 39 1 4.7243 -5.2606 4.6260 40 1 4.1612 -8.3793 5.6676 41 1 6.0594 -2.9777 5.2387 42 1 4.5756 -2.8199 4.2685 43 1 7.3203 -1.7183 3.5144 44 1 5.9515 -0.7616 4.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713284069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:24 Heat of formation + Delta-G solvation = -60.637050 kcal Electronic energy + Delta-G solvation = -21217.116089 eV Core-core repulsion = 18168.190173 eV Total energy + Delta-G solvation = -3048.925916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.17347 -38.18807 -35.65026 -34.55710 -32.74486 -30.82787 -30.43111 -28.53774 -27.22404 -27.09897 -23.67714 -22.23806 -21.63960 -20.81306 -19.91433 -18.82427 -17.27318 -17.03569 -15.75359 -15.50375 -15.35191 -14.72892 -14.13348 -14.07905 -13.96991 -13.54879 -13.41946 -13.14280 -12.54013 -12.37492 -12.34395 -12.12379 -12.02150 -11.84896 -11.60634 -11.24190 -11.00310 -10.96863 -10.88995 -10.79272 -10.79058 -10.37590 -10.16779 -10.10575 -9.69957 -9.60140 -9.57376 -8.91763 -8.77870 -6.95518 -5.77700 -3.05806 2.75727 3.31825 3.42363 3.48519 3.50341 4.57874 4.64030 4.73885 4.80930 4.97617 5.09172 5.14462 5.22628 5.38181 5.47749 5.50634 5.53361 5.56113 5.58731 5.70257 5.75835 5.76646 5.86765 5.88755 5.94052 6.01050 6.03645 6.10281 6.24766 6.27545 6.32413 6.37319 6.51693 6.55774 6.68884 6.78550 6.98613 7.13582 7.64650 7.70573 8.36046 8.41419 9.52539 10.10767 10.45186 11.45167 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.003925 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.758106 B = 7132.129995 C = 7632.730091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.152 4.152 4 C -0.140 4.140 5 C 0.513 3.487 6 O -0.545 6.545 7 N -0.719 5.719 8 C 0.148 3.852 9 C -0.128 4.128 10 C -0.131 4.131 11 C 0.177 3.823 12 N -0.726 5.726 13 C -0.235 4.235 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.905 3.095 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.124 4.124 22 C -0.122 4.122 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.401 0.599 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.066 0.934 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.382 0.618 40 H 0.254 0.746 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.410 16.823 -6.205 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 C -0.210 4.210 4 C -0.180 4.180 5 C 0.299 3.701 6 O -0.423 6.423 7 N -0.371 5.371 8 C 0.043 3.957 9 C -0.167 4.167 10 C -0.172 4.172 11 C 0.068 3.932 12 N -0.366 5.366 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.736 3.264 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.163 4.163 22 C -0.161 4.161 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.093 0.907 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.112 0.888 31 H 0.109 0.891 32 H 0.236 0.764 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.846 16.989 -6.907 18.739 hybrid contribution -0.176 -1.293 0.466 1.386 sum -4.022 15.696 -6.442 17.437 Atomic orbital electron populations 1.21869 0.95115 1.01797 1.01788 1.20840 0.94912 0.96800 0.97342 1.21956 1.03185 0.95053 1.00758 1.21797 0.92411 1.03105 1.00716 1.20670 0.90059 0.77118 0.82210 1.90637 1.70443 1.48055 1.33167 1.46206 1.07972 1.59390 1.23577 1.20940 0.79628 0.98658 0.96429 1.21919 1.00802 0.95113 0.98888 1.22203 1.00260 0.95825 0.98886 1.20230 0.96566 0.86256 0.90190 1.42433 1.34255 1.02591 1.57317 1.19294 1.08227 0.85227 1.23931 0.91196 1.24728 0.98184 0.97886 1.00261 1.69667 1.24119 1.28398 1.36087 0.86146 0.78473 0.84526 0.77253 1.20573 1.21915 1.21916 1.21810 1.00172 0.94478 0.99806 1.21793 1.01257 0.98427 0.94588 0.92713 0.92544 0.92595 0.90473 0.90655 0.93163 0.93529 0.88843 0.89113 0.76363 0.90114 0.92357 0.91566 0.92240 0.92858 0.93585 0.78430 0.93630 0.91524 0.92651 0.90492 0.91886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.19 37.16 0.34 -0.85 16 2 C -0.08 -0.80 2.57 -90.62 -0.23 -1.03 16 3 C -0.15 -1.55 8.93 37.16 0.33 -1.22 16 4 C -0.14 -1.39 5.17 -27.88 -0.14 -1.53 16 5 C 0.51 6.62 7.51 -10.98 -0.08 6.53 16 6 O -0.54 -8.70 13.63 5.55 0.08 -8.63 16 7 N -0.72 -8.82 4.23 -53.81 -0.23 -9.05 16 8 C 0.15 1.93 2.78 -67.93 -0.19 1.74 16 9 C -0.13 -1.90 5.60 -26.73 -0.15 -2.05 16 10 C -0.13 -2.32 5.34 -26.73 -0.14 -2.46 16 11 C 0.18 3.36 2.77 -67.93 -0.19 3.17 16 12 N -0.73 -17.67 5.12 -53.42 -0.27 -17.95 16 13 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 14 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 15 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 16 N -0.93 -27.89 13.06 55.49 0.72 -27.17 16 17 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 C -0.12 -1.87 5.22 -26.73 -0.14 -2.01 16 22 C -0.12 -1.49 5.61 -26.73 -0.15 -1.64 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.89 7.96 -51.93 -0.41 0.48 16 27 H 0.07 0.94 5.95 -51.93 -0.31 0.63 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.40 4.46 6.87 -40.82 -0.28 4.18 16 33 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.05 0.96 7.60 -51.93 -0.39 0.57 16 38 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.38 9.85 7.80 -40.82 -0.32 9.54 16 40 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.79 6.51 -51.93 -0.34 0.46 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -30.93 343.37 -8.45 -39.37 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -7.91 Total: 9.40 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -0.99 Total: -8.46 kcal Atomic # 7 Polarization: -54.38 SS G_CDS: 0.22 Total: -54.16 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: 0.08 Total: -8.63 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.93 -8.45 -39.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713284069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.262 kcal (2) G-P(sol) polarization free energy of solvation -30.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds