Wall clock time and date at job start Mon Mar 30 2020 00:29:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47335 * 2 1 4 4 C 1.52996 * 109.47141 * 120.00020 * 2 1 3 5 5 C 1.50702 * 109.47159 * 174.99728 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 9 9 C 1.52997 * 109.47288 * 275.00460 * 8 7 5 10 10 C 1.52997 * 109.47394 * 299.99753 * 9 8 7 11 11 C 1.53005 * 109.46837 * 300.00212 * 10 9 8 12 12 N 1.46504 * 109.46805 * 179.97438 * 11 10 9 13 13 C 1.36937 * 119.99818 * 84.99985 * 12 11 10 14 14 H 1.08001 * 120.00132 * 359.97438 * 13 12 11 15 15 C 1.38815 * 119.99995 * 179.97438 * 13 12 11 16 16 N 1.31622 * 119.99937 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99894 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47105 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46705 * 120.00577 * 17 15 13 20 20 H 1.48500 * 109.46759 * 240.00067 * 17 15 13 21 21 C 1.52997 * 109.47302 * 59.99731 * 11 10 9 22 22 C 1.52999 * 109.47481 * 154.99940 * 8 7 5 23 23 H 1.09001 * 109.47091 * 300.00599 * 1 2 3 24 24 H 1.09001 * 109.47039 * 59.99430 * 1 2 3 25 25 H 1.09000 * 109.47103 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47436 * 240.00095 * 2 1 3 27 27 H 1.09005 * 109.47435 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47522 * 300.00274 * 3 2 1 29 29 H 1.09007 * 109.47141 * 60.00277 * 3 2 1 30 30 H 1.09004 * 109.47066 * 54.99931 * 4 2 1 31 31 H 1.08994 * 109.47405 * 294.99761 * 4 2 1 32 32 H 0.97000 * 120.00317 * 0.28382 * 7 5 4 33 33 H 1.09001 * 109.46948 * 35.00281 * 8 7 5 34 34 H 1.09006 * 109.47495 * 60.00048 * 9 8 7 35 35 H 1.09007 * 109.47320 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.47567 * 179.97438 * 10 9 8 37 37 H 1.08998 * 109.46943 * 59.99679 * 10 9 8 38 38 H 1.08998 * 109.46918 * 299.99482 * 11 10 9 39 39 H 0.96995 * 119.99891 * 264.99692 * 12 11 10 40 40 H 0.97000 * 119.99735 * 179.97438 * 16 15 13 41 41 H 1.08996 * 109.47024 * 179.97438 * 21 11 10 42 42 H 1.09007 * 109.47320 * 59.99736 * 21 11 10 43 43 H 1.08993 * 109.47607 * 179.97438 * 22 8 7 44 44 H 1.09000 * 109.47556 * 300.00768 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8294 1.1888 6 8 4.1451 -0.3741 0.2403 7 7 4.2153 -1.4269 2.1918 8 6 5.6758 -1.5267 2.1361 9 6 6.0719 -2.7647 1.3290 10 6 5.5006 -4.0153 2.0000 11 6 6.0585 -4.1321 3.4200 12 7 5.5109 -5.3294 4.0627 13 6 6.1097 -6.5454 3.8683 14 1 6.9854 -6.6220 3.2408 15 6 5.5912 -7.6798 4.4777 16 7 4.5237 -7.5865 5.2421 17 14 6.4077 -9.3388 4.2119 18 1 7.5815 -9.1751 3.3172 19 1 6.8540 -9.8857 5.5184 20 1 5.4367 -10.2741 3.5894 21 6 5.6623 -2.8942 4.2270 22 6 6.2337 -1.6435 3.5559 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1301 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 1.6053 -1.7198 1.2951 31 1 1.7517 -0.1584 2.1369 32 1 3.7330 -1.7908 2.9506 33 1 6.0829 -0.6358 1.6579 34 1 5.6746 -2.6815 0.3174 35 1 7.1587 -2.8388 1.2871 36 1 5.7824 -4.8973 1.4248 37 1 4.4140 -3.9410 2.0416 38 1 7.1451 -4.2064 3.3784 39 1 4.7243 -5.2606 4.6260 40 1 4.1612 -8.3793 5.6676 41 1 6.0594 -2.9777 5.2387 42 1 4.5756 -2.8199 4.2685 43 1 7.3203 -1.7183 3.5144 44 1 5.9515 -0.7616 4.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713284069.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:24 Heat of formation + Delta-G solvation = -79.574271 kcal Electronic energy + Delta-G solvation = -21217.937268 eV Core-core repulsion = 18168.190173 eV Total energy + Delta-G solvation = -3049.747095 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.25047 -39.40791 -36.65481 -36.02907 -34.27127 -32.48543 -31.68911 -29.79861 -28.33369 -27.91940 -25.59930 -23.50511 -22.74310 -22.15066 -20.75026 -20.13618 -19.05927 -18.18991 -16.96063 -16.74177 -16.54921 -16.13486 -15.55061 -15.23659 -15.16104 -14.88159 -14.72429 -14.39090 -13.88704 -13.63284 -13.23166 -13.09547 -13.06966 -13.02299 -12.85490 -12.83641 -12.66104 -12.12206 -12.07267 -12.01666 -11.94984 -11.75004 -11.65144 -11.55171 -11.30316 -11.08667 -10.82524 -10.63340 -9.90368 -8.97220 -7.93650 -5.20553 1.46658 1.47215 1.56740 1.75895 2.35542 2.56491 3.39736 3.74587 3.81386 3.87528 3.91711 3.98718 4.06369 4.32522 4.33834 4.40105 4.44257 4.61491 4.66617 4.69040 4.71550 4.74466 4.78544 4.85065 4.87546 5.02873 5.06370 5.10321 5.16021 5.18032 5.26655 5.31419 5.32715 5.47101 5.50425 5.54246 5.57961 5.65311 5.70207 6.30104 6.66810 7.36026 7.37423 8.13867 8.36439 9.29886 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.025902 B = 0.003925 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.758106 B = 7132.129995 C = 7632.730091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.136 4.136 5 C 0.508 3.492 6 O -0.579 6.579 7 N -0.715 5.715 8 C 0.152 3.848 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.172 3.828 12 N -0.737 5.737 13 C -0.235 4.235 14 H 0.070 0.930 15 C -0.075 4.075 16 N -0.968 5.968 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.293 1.293 20 H -0.295 1.295 21 C -0.115 4.115 22 C -0.109 4.109 23 H 0.066 0.934 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.408 0.592 33 H 0.083 0.917 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.030 0.970 37 H 0.048 0.952 38 H 0.038 0.962 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.576 18.085 -5.975 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.176 4.176 5 C 0.296 3.704 6 O -0.459 6.459 7 N -0.368 5.368 8 C 0.047 3.953 9 C -0.158 4.158 10 C -0.159 4.159 11 C 0.064 3.936 12 N -0.376 5.376 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.267 4.267 16 N -0.619 5.619 17 Si 0.796 3.204 18 H -0.194 1.194 19 H -0.220 1.220 20 H -0.222 1.222 21 C -0.153 4.153 22 C -0.148 4.148 23 H 0.085 0.915 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.245 0.755 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.993 18.280 -6.692 19.871 hybrid contribution -0.098 -1.636 0.340 1.674 sum -4.091 16.644 -6.352 18.278 Atomic orbital electron populations 1.21824 0.93337 1.02270 1.02630 1.20835 0.96318 0.96378 0.96478 1.21902 1.01482 0.95476 1.01733 1.21848 0.90038 1.04050 1.01667 1.21224 0.91289 0.76290 0.81558 1.90629 1.71373 1.49472 1.34432 1.46198 1.07721 1.59100 1.23755 1.20865 0.80278 0.97471 0.96682 1.21829 1.01174 0.94554 0.98262 1.21987 0.99918 0.96139 0.97841 1.20462 0.95895 0.86182 0.91024 1.42630 1.33980 1.03426 1.57583 1.19617 1.07811 0.86568 1.22726 0.91171 1.25463 0.99176 1.01160 1.00909 1.69802 1.25665 1.28885 1.37542 0.85176 0.77750 0.80468 0.77027 1.19367 1.22027 1.22249 1.21688 1.00875 0.93708 0.99034 1.21725 1.01627 0.97707 0.93707 0.91455 0.92144 0.92320 0.92769 0.93172 0.92668 0.92092 0.87925 0.86683 0.75524 0.89912 0.93472 0.90632 0.95141 0.93357 0.94370 0.79503 0.94128 0.91949 0.91846 0.89546 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.19 71.98 0.66 -1.34 16 2 C -0.08 -1.52 2.57 -10.80 -0.03 -1.54 16 3 C -0.15 -2.85 8.93 71.98 0.64 -2.20 16 4 C -0.14 -2.43 5.17 29.85 0.15 -2.28 16 5 C 0.51 12.46 7.51 87.66 0.66 13.12 16 6 O -0.58 -18.25 13.63 -3.04 -0.04 -18.29 16 7 N -0.72 -16.21 4.23 -442.54 -1.87 -18.08 16 8 C 0.15 3.66 2.78 44.99 0.13 3.78 16 9 C -0.12 -3.41 5.60 30.59 0.17 -3.24 16 10 C -0.12 -4.16 5.34 30.59 0.16 -4.00 16 11 C 0.17 6.43 2.77 44.99 0.12 6.55 16 12 N -0.74 -36.02 5.12 -322.93 -1.65 -37.67 16 13 C -0.24 -12.95 9.93 84.03 0.83 -12.11 16 14 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 15 C -0.07 -4.27 5.50 84.86 0.47 -3.80 16 16 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 17 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 18 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 19 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 21 C -0.11 -3.23 5.22 30.60 0.16 -3.07 16 22 C -0.11 -2.34 5.61 30.60 0.17 -2.17 16 23 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 27 H 0.05 1.23 5.95 -2.38 -0.01 1.21 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 31 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.41 8.13 6.87 -92.71 -0.64 7.49 16 33 H 0.08 2.06 7.58 -2.39 -0.02 2.04 16 34 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.72 7.60 -2.39 -0.02 1.71 16 38 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 39 H 0.37 19.40 7.80 -92.71 -0.72 18.67 16 40 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 41 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.06 1.69 6.51 -2.38 -0.02 1.67 16 43 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -66.93 343.37 2.66 -64.27 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: -0.39 Total: 32.07 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: 4.31 Total: -12.31 kcal Atomic # 7 Polarization: -110.67 SS G_CDS: -3.24 Total: -113.91 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.04 Total: -18.29 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -66.93 2.66 -64.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713284069.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.308 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds