Wall clock time and date at job start Mon Mar 30 2020 00:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46939 * 2 1 4 4 C 1.53002 * 109.47155 * 119.99506 * 2 1 3 5 5 C 1.50701 * 109.47338 * 175.00254 * 4 2 1 6 6 O 1.21283 * 119.99650 * 0.02562 * 5 4 2 7 7 N 1.34773 * 120.00135 * 180.02562 * 5 4 2 8 8 C 1.46495 * 119.99922 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99953 * 180.02562 * 7 5 4 10 10 C 1.53045 * 109.46217 * 119.99530 * 9 7 5 11 11 C 1.53188 * 109.31391 * 181.38498 * 10 9 7 12 12 N 1.46936 * 108.89281 * 305.29783 * 11 10 9 13 13 C 1.36935 * 120.62903 * 233.68017 * 12 11 10 14 14 H 1.08007 * 119.99920 * 27.39746 * 13 12 11 15 15 C 1.38804 * 120.00238 * 207.39383 * 13 12 11 16 16 N 1.31624 * 120.00025 * 17.25587 * 15 13 12 17 17 Si 1.86801 * 120.00311 * 197.25673 * 15 13 12 18 18 H 1.48497 * 109.47244 * 60.00150 * 17 15 13 19 19 H 1.48504 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47113 * 300.00082 * 17 15 13 21 21 C 1.47199 * 118.55327 * 53.53951 * 12 11 10 22 22 C 1.53035 * 109.45950 * 240.07015 * 9 7 5 23 23 H 1.08994 * 109.47361 * 300.00158 * 1 2 3 24 24 H 1.08994 * 109.46979 * 60.00534 * 1 2 3 25 25 H 1.09006 * 109.46580 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47547 * 240.00310 * 2 1 3 27 27 H 1.08998 * 109.46748 * 59.99820 * 3 2 1 28 28 H 1.09001 * 109.47094 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.46950 * 300.00006 * 3 2 1 30 30 H 1.09004 * 109.46655 * 55.00642 * 4 2 1 31 31 H 1.08999 * 109.47294 * 295.00490 * 4 2 1 32 32 H 1.09005 * 109.47097 * 269.99794 * 8 7 5 33 33 H 1.08998 * 109.47617 * 30.00069 * 8 7 5 34 34 H 1.09006 * 109.47226 * 150.00467 * 8 7 5 35 35 H 1.09002 * 109.44878 * 0.03212 * 9 7 5 36 36 H 1.09001 * 109.49105 * 61.43765 * 10 9 7 37 37 H 1.08999 * 109.52410 * 301.35407 * 10 9 7 38 38 H 1.08994 * 109.58954 * 65.15196 * 11 10 9 39 39 H 1.08992 * 109.58924 * 185.43968 * 11 10 9 40 40 H 0.96996 * 120.00327 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.53153 * 186.67308 * 21 12 11 42 42 H 1.09002 * 109.68302 * 66.36980 * 21 12 11 43 43 H 1.09007 * 109.49366 * 298.56131 * 22 9 7 44 44 H 1.08993 * 109.50367 * 58.62610 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 8 4.1451 -0.3739 0.2404 7 7 4.2149 -1.4320 2.1892 8 6 3.4863 -1.9825 3.3347 9 6 5.6750 -1.5365 2.1308 10 6 6.2861 -0.8197 3.3370 11 6 7.8136 -0.9013 3.2544 12 7 8.2087 -2.3111 3.1298 13 6 9.1150 -2.8609 3.9967 14 1 9.2174 -2.4623 4.9953 15 6 9.9019 -3.9303 3.5921 16 7 10.0355 -4.2016 2.3111 17 14 10.7712 -4.9848 4.8657 18 1 9.7657 -5.6006 5.7683 19 1 11.5424 -6.0531 4.1807 20 1 11.6972 -4.1384 5.6603 21 6 7.6069 -3.1181 2.0559 22 6 6.0817 -3.0117 2.1519 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6054 -1.7198 1.2952 31 1 1.7516 -0.1582 2.1370 32 1 3.3896 -1.2177 4.1054 33 1 2.4949 -2.3032 3.0147 34 1 4.0323 -2.8361 3.7364 35 1 6.0356 -1.0736 1.2123 36 1 5.9454 -1.2979 4.2553 37 1 5.9770 0.2255 3.3347 38 1 8.1627 -0.3458 2.3840 39 1 8.2516 -0.4776 4.1580 40 1 10.5857 -4.9487 2.0283 41 1 7.9084 -4.1594 2.1700 42 1 7.9389 -2.7457 1.0868 43 1 5.7429 -3.4692 3.0815 44 1 5.6266 -3.5268 1.3060 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713776578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:29:53 Heat of formation + Delta-G solvation = -48.614537 kcal Electronic energy + Delta-G solvation = -21572.333508 eV Core-core repulsion = 18523.928927 eV Total energy + Delta-G solvation = -3048.404581 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25996 -39.16622 -36.79437 -36.21304 -34.29188 -32.06771 -31.45779 -29.08793 -27.95168 -27.85139 -26.65717 -23.92707 -23.77712 -21.52485 -20.64868 -19.88104 -18.76225 -17.91223 -17.26417 -16.91001 -16.55705 -15.80765 -15.42873 -15.38646 -14.91267 -14.75686 -14.63733 -14.26154 -14.10242 -13.88527 -13.30676 -13.23851 -13.10898 -12.99741 -12.96761 -12.70786 -12.57319 -12.54204 -12.09008 -12.04155 -11.94820 -11.90807 -11.71010 -11.54256 -11.45746 -11.32985 -10.58538 -10.56815 -9.52936 -8.74144 -7.88637 -5.34577 1.48100 1.50239 1.57532 1.70883 2.08163 2.51282 3.27043 3.58928 3.64912 3.87714 3.94537 4.03168 4.07502 4.29328 4.30784 4.42287 4.44484 4.62616 4.65274 4.69021 4.74547 4.77024 4.78107 4.83273 4.87651 4.99510 5.03056 5.04276 5.07246 5.12110 5.15927 5.27631 5.32563 5.43874 5.47804 5.55343 5.61912 5.65207 5.68116 6.36491 6.53508 7.11569 7.27903 7.81637 8.35695 9.18666 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.044377 B = 0.003898 C = 0.003873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.811311 B = 7180.836648 C = 7228.149226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 C -0.151 4.151 4 C -0.125 4.125 5 C 0.500 3.500 6 O -0.588 6.588 7 N -0.611 5.611 8 C 0.070 3.930 9 C 0.153 3.847 10 C -0.119 4.119 11 C 0.142 3.858 12 N -0.609 5.609 13 C -0.264 4.264 14 H 0.072 0.928 15 C -0.052 4.052 16 N -0.938 5.938 17 Si 0.972 3.028 18 H -0.274 1.274 19 H -0.296 1.296 20 H -0.275 1.275 21 C 0.181 3.819 22 C -0.127 4.127 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.004 0.996 39 H 0.063 0.937 40 H 0.250 0.750 41 H 0.060 0.940 42 H -0.013 1.013 43 H 0.069 0.931 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.134 5.992 1.972 22.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.164 4.164 5 C 0.290 3.710 6 O -0.468 6.468 7 N -0.342 5.342 8 C -0.072 4.072 9 C 0.049 3.951 10 C -0.158 4.158 11 C 0.016 3.984 12 N -0.332 5.332 13 C -0.394 4.394 14 H 0.090 0.910 15 C -0.247 4.247 16 N -0.584 5.584 17 Si 0.799 3.201 18 H -0.200 1.200 19 H -0.222 1.222 20 H -0.201 1.201 21 C 0.054 3.946 22 C -0.166 4.166 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.134 0.866 31 H 0.135 0.865 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.079 0.921 42 H 0.005 0.995 43 H 0.088 0.912 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.731 6.112 1.438 21.661 hybrid contribution 1.283 -0.650 0.072 1.440 sum -19.448 5.462 1.510 20.256 Atomic orbital electron populations 1.21796 0.92647 1.02604 1.02633 1.20878 0.96748 0.96004 0.96622 1.21915 1.01110 0.96062 1.01763 1.21855 0.88697 1.04378 1.01490 1.21587 0.91874 0.76409 0.81087 1.90644 1.71622 1.49633 1.34940 1.48182 1.06449 1.57370 1.22246 1.22040 0.97643 0.99597 0.87910 1.20732 0.79767 0.95806 0.98775 1.22122 0.96059 0.99841 0.97826 1.21003 0.93394 0.85444 0.98524 1.44390 1.47886 1.05985 1.34970 1.19525 1.12972 1.13692 0.93249 0.91040 1.25860 0.98802 1.02684 0.97393 1.70201 1.42420 1.30674 1.15112 0.85283 0.78180 0.78221 0.78403 1.19985 1.22241 1.20105 1.20559 0.88936 0.96505 0.88574 1.22266 0.97460 0.95658 1.01261 0.91300 0.92374 0.91642 0.92938 0.91960 0.93998 0.92657 0.86626 0.86549 0.90983 0.88176 0.91208 0.92099 0.90886 0.91227 0.97753 0.91859 0.94083 0.92127 0.99454 0.91240 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 2 C -0.08 -1.58 2.57 -10.79 -0.03 -1.61 16 3 C -0.15 -3.22 8.93 71.98 0.64 -2.58 16 4 C -0.12 -2.17 3.73 29.85 0.11 -2.06 16 5 C 0.50 14.11 7.39 87.66 0.65 14.76 16 6 O -0.59 -22.19 13.29 -3.04 -0.04 -22.23 16 7 N -0.61 -16.76 2.76 -822.44 -2.27 -19.03 16 8 C 0.07 1.26 9.33 127.77 1.19 2.45 16 9 C 0.15 5.46 2.48 45.02 0.11 5.57 16 10 C -0.12 -4.07 5.34 30.67 0.16 -3.91 16 11 C 0.14 6.11 6.51 86.36 0.56 6.68 16 12 N -0.61 -31.23 3.01 -698.39 -2.10 -33.33 16 13 C -0.26 -14.59 9.59 84.03 0.81 -13.79 16 14 H 0.07 3.78 7.89 -2.91 -0.02 3.76 16 15 C -0.05 -2.93 4.92 84.86 0.42 -2.51 16 16 N -0.94 -56.49 11.18 21.65 0.24 -56.24 16 17 Si 0.97 44.71 29.59 68.60 2.03 46.74 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 C 0.18 9.07 5.33 86.31 0.46 9.53 16 22 C -0.13 -4.92 5.31 30.67 0.16 -4.76 16 23 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 26 H 0.05 1.25 7.96 -2.39 -0.02 1.23 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.04 1.19 5.95 -2.39 -0.01 1.18 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.12 1.46 7.40 -2.39 -0.02 1.44 16 31 H 0.12 1.46 8.11 -2.39 -0.02 1.44 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.10 1.15 6.44 -2.39 -0.02 1.14 16 34 H 0.07 1.40 6.46 -2.38 -0.02 1.39 16 35 H 0.06 2.61 6.90 -2.39 -0.02 2.59 16 36 H 0.07 2.35 7.72 -2.39 -0.02 2.33 16 37 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.06 2.59 7.93 -2.39 -0.02 2.57 16 40 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 41 H 0.06 3.39 6.04 -2.39 -0.01 3.37 16 42 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 43 H 0.07 2.54 6.73 -2.38 -0.02 2.53 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.43 337.01 4.72 -65.71 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.95 Total: 11.67 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 5.91 Total: 6.72 kcal Atomic # 7 Polarization: -104.47 SS G_CDS: -4.13 Total: -108.60 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.04 Total: -22.23 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -70.43 4.72 -65.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713776578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.093 kcal (2) G-P(sol) polarization free energy of solvation -70.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds