Wall clock time and date at job start Mon Mar 30 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47389 * 180.02562 * 4 3 2 6 6 O 1.21290 * 119.99656 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99996 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47007 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47143 * 180.02562 * 9 8 7 11 11 H 1.09008 * 110.88401 * 305.69868 * 10 9 8 12 12 C 1.55156 * 111.00536 * 181.82215 * 10 9 8 13 13 C 1.54367 * 102.91900 * 206.44995 * 12 10 9 14 14 N 1.47019 * 107.28999 * 22.14043 * 13 12 10 15 15 C 1.36931 * 125.64997 * 181.05471 * 14 13 12 16 16 H 1.08005 * 120.00370 * 180.02562 * 15 14 13 17 17 C 1.38820 * 120.00066 * 0.04047 * 15 14 13 18 18 N 1.31618 * 119.99689 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99872 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47190 * 120.00342 * 19 17 15 22 22 H 1.48506 * 109.46640 * 239.99636 * 19 17 15 23 23 C 1.47428 * 108.70376 * 1.08963 * 14 13 12 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 32 32 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 33 33 H 0.96998 * 119.99906 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.47042 * 300.00077 * 8 7 5 35 35 H 1.09002 * 109.47092 * 60.00078 * 8 7 5 36 36 H 1.09000 * 109.47611 * 299.99601 * 9 8 7 37 37 H 1.09002 * 109.47153 * 60.00089 * 9 8 7 38 38 H 1.08999 * 110.72130 * 324.78576 * 12 10 9 39 39 H 1.09008 * 110.72117 * 88.06042 * 12 10 9 40 40 H 1.09004 * 109.84981 * 262.72583 * 13 12 10 41 41 H 1.09009 * 110.02938 * 141.64745 * 13 12 10 42 42 H 0.97005 * 119.99548 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36395 * 217.03712 * 23 14 13 44 44 H 1.08997 * 110.46061 * 94.75677 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2841 3.7852 0.0013 7 7 5.3974 3.1097 0.0001 8 6 5.8857 4.4909 0.0013 9 6 7.4157 4.4909 0.0005 10 6 7.9257 5.9334 0.0024 11 1 7.4945 6.4991 -0.8236 12 6 9.4760 5.9752 -0.0444 13 6 9.8054 7.3230 0.6324 14 7 8.6501 7.6876 1.4653 15 6 8.5355 8.8269 2.2162 16 1 7.6421 9.0034 2.7970 17 6 9.5674 9.7553 2.2309 18 7 10.6562 9.5402 1.5234 19 14 9.4113 11.3091 3.2559 20 1 8.1003 11.3124 3.9535 21 1 10.5060 11.3531 4.2583 22 1 9.5032 12.4976 2.3702 23 6 7.6357 6.6231 1.3588 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9337 0.9286 0.8891 32 1 3.9330 0.9288 -0.8909 33 1 6.0277 2.3724 -0.0006 34 1 5.5222 5.0055 -0.8882 35 1 5.5224 5.0039 0.8918 36 1 7.7795 3.9762 0.8898 37 1 7.7786 3.9780 -0.8902 38 1 9.9014 5.1460 0.5208 39 1 9.8312 5.9635 -1.0749 40 1 9.9713 8.0875 -0.1266 41 1 10.6940 7.2205 1.2555 42 1 11.3772 10.1891 1.5334 43 1 6.6339 7.0524 1.3597 44 1 7.7433 5.9110 2.1771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714865448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:18 Heat of formation + Delta-G solvation = -47.307869 kcal Electronic energy + Delta-G solvation = -20074.464388 eV Core-core repulsion = 17026.116469 eV Total energy + Delta-G solvation = -3048.347919 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.80822 -37.81151 -35.78553 -35.06026 -33.00773 -31.28504 -30.36186 -28.92931 -26.71753 -25.13322 -24.19139 -22.24913 -21.38962 -20.50555 -19.96683 -19.38071 -16.99287 -16.85134 -16.30400 -15.82078 -15.43961 -14.84791 -14.54367 -14.04347 -13.94725 -13.92666 -13.58282 -13.00056 -12.61138 -12.43418 -12.21310 -11.93217 -11.81681 -11.62749 -11.54864 -11.44430 -11.28304 -11.07050 -10.87021 -10.84052 -10.75638 -10.09562 -10.07117 -9.92149 -9.79116 -9.69316 -9.57704 -9.07108 -8.56250 -6.77897 -5.67175 -3.00061 2.59558 3.13108 3.42543 3.48143 3.50697 4.51352 4.54080 4.56300 4.64573 4.91287 4.99087 4.99961 5.12650 5.18375 5.30131 5.38603 5.51177 5.52445 5.53396 5.63118 5.64534 5.68753 5.79472 5.84563 5.91516 5.96505 6.04524 6.09282 6.16164 6.23950 6.41245 6.43966 6.58285 6.63063 6.76981 7.00810 7.43920 7.61331 7.67589 7.87308 8.18108 8.30966 9.27085 9.87561 10.54067 11.44744 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036666 B = 0.002746 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.460917 B =10193.679932 C =10811.778035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.507 3.493 6 O -0.541 6.541 7 N -0.732 5.732 8 C 0.116 3.884 9 C -0.115 4.115 10 C -0.101 4.101 11 H 0.075 0.925 12 C -0.138 4.138 13 C 0.176 3.824 14 N -0.607 5.607 15 C -0.225 4.225 16 H 0.078 0.922 17 C -0.011 4.011 18 N -0.923 5.923 19 Si 0.912 3.088 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.140 3.860 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.251 0.749 43 H 0.037 0.963 44 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.833 -20.564 -5.189 24.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.181 4.181 5 C 0.293 3.707 6 O -0.418 6.418 7 N -0.383 5.383 8 C -0.007 4.007 9 C -0.154 4.154 10 C -0.121 4.121 11 H 0.094 0.906 12 C -0.177 4.177 13 C 0.052 3.948 14 N -0.334 5.334 15 C -0.354 4.354 16 H 0.096 0.904 17 C -0.207 4.207 18 N -0.571 5.571 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.014 3.986 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.232 0.768 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.278 -19.676 -5.129 23.753 hybrid contribution 0.453 0.515 0.524 0.863 sum -11.825 -19.160 -4.606 22.982 Atomic orbital electron populations 1.21765 0.95726 1.01476 1.02093 1.21550 0.96152 0.96641 1.01912 1.21381 0.92769 0.96520 1.03722 1.21705 0.98177 0.93978 1.04237 1.20760 0.82261 0.91724 0.75955 1.90722 1.55293 1.46626 1.49184 1.46138 1.07067 1.09478 1.75644 1.21487 0.94490 0.81965 1.02724 1.21738 0.93225 0.98263 1.02144 1.22273 0.96647 0.93508 0.99632 0.90629 1.22906 0.94266 1.00431 1.00063 1.21145 0.90196 0.90151 0.93341 1.44502 1.15187 1.19722 1.53940 1.19131 1.01512 0.94801 1.19918 0.90427 1.24813 0.96536 0.98985 1.00397 1.69986 1.06993 1.35891 1.44253 0.86039 0.77250 0.83082 0.79397 1.20501 1.21804 1.21787 1.21608 0.93202 0.90737 0.93103 0.92614 0.92833 0.92655 0.92004 0.92046 0.91217 0.91153 0.88994 0.89053 0.76755 0.91558 0.91019 0.91348 0.91714 0.92591 0.92349 0.93729 0.94073 0.93894 0.94476 0.96542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -1.07 5.70 -27.88 -0.16 -1.23 16 5 C 0.51 5.97 7.83 -10.99 -0.09 5.88 16 6 O -0.54 -8.88 15.98 5.55 0.09 -8.79 16 7 N -0.73 -7.62 5.56 -60.29 -0.33 -7.95 16 8 C 0.12 1.50 5.55 -4.04 -0.02 1.48 16 9 C -0.12 -1.44 4.84 -26.73 -0.13 -1.57 16 10 C -0.10 -1.70 3.04 -88.47 -0.27 -1.97 16 11 H 0.08 1.31 8.14 -51.92 -0.42 0.89 16 12 C -0.14 -2.54 6.42 -24.87 -0.16 -2.70 16 13 C 0.18 4.36 5.38 -3.04 -0.02 4.34 16 14 N -0.61 -15.94 3.39 -170.04 -0.58 -16.52 16 15 C -0.23 -6.47 10.28 -15.06 -0.15 -6.62 16 16 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 17 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 18 N -0.92 -27.70 10.31 55.49 0.57 -27.13 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C 0.14 2.93 6.04 -2.53 -0.02 2.91 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.40 2.87 8.47 -40.82 -0.35 2.53 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.07 7.59 -51.93 -0.39 0.67 16 36 H 0.07 0.83 8.03 -51.93 -0.42 0.41 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 39 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 40 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 41 H 0.04 1.12 7.50 -51.92 -0.39 0.73 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.02 0.35 7.95 -51.93 -0.41 -0.07 16 LS Contribution 352.00 15.07 5.30 5.30 Total: -1.00 -33.54 352.00 -9.21 -42.75 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -8.22 Total: -2.79 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: -1.02 Total: -2.47 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.34 Total: -51.61 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.54 -9.21 -42.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714865448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.558 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds