Wall clock time and date at job start Mon Mar 30 2020 00:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47389 * 180.02562 * 4 3 2 6 6 O 1.21290 * 119.99656 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00068 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99996 * 180.02562 * 7 5 4 9 9 C 1.52997 * 109.47007 * 180.02562 * 8 7 5 10 10 C 1.53002 * 109.47143 * 180.02562 * 9 8 7 11 11 H 1.09008 * 110.88401 * 305.69868 * 10 9 8 12 12 C 1.55156 * 111.00536 * 181.82215 * 10 9 8 13 13 C 1.54367 * 102.91900 * 206.44995 * 12 10 9 14 14 N 1.47019 * 107.28999 * 22.14043 * 13 12 10 15 15 C 1.36931 * 125.64997 * 181.05471 * 14 13 12 16 16 H 1.08005 * 120.00370 * 180.02562 * 15 14 13 17 17 C 1.38820 * 120.00066 * 0.04047 * 15 14 13 18 18 N 1.31618 * 119.99689 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99872 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47261 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47190 * 120.00342 * 19 17 15 22 22 H 1.48506 * 109.46640 * 239.99636 * 19 17 15 23 23 C 1.47428 * 108.70376 * 1.08963 * 14 13 12 24 24 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 25 25 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 27 27 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 28 28 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 29 29 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 30 30 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 31 31 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 32 32 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 33 33 H 0.96998 * 119.99906 * 0.02562 * 7 5 4 34 34 H 1.09004 * 109.47042 * 300.00077 * 8 7 5 35 35 H 1.09002 * 109.47092 * 60.00078 * 8 7 5 36 36 H 1.09000 * 109.47611 * 299.99601 * 9 8 7 37 37 H 1.09002 * 109.47153 * 60.00089 * 9 8 7 38 38 H 1.08999 * 110.72130 * 324.78576 * 12 10 9 39 39 H 1.09008 * 110.72117 * 88.06042 * 12 10 9 40 40 H 1.09004 * 109.84981 * 262.72583 * 13 12 10 41 41 H 1.09009 * 110.02938 * 141.64745 * 13 12 10 42 42 H 0.97005 * 119.99548 * 179.97438 * 18 17 15 43 43 H 1.08999 * 110.36395 * 217.03712 * 23 14 13 44 44 H 1.08997 * 110.46061 * 94.75677 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0724 2.8634 0.0000 6 8 3.2841 3.7852 0.0013 7 7 5.3974 3.1097 0.0001 8 6 5.8857 4.4909 0.0013 9 6 7.4157 4.4909 0.0005 10 6 7.9257 5.9334 0.0024 11 1 7.4945 6.4991 -0.8236 12 6 9.4760 5.9752 -0.0444 13 6 9.8054 7.3230 0.6324 14 7 8.6501 7.6876 1.4653 15 6 8.5355 8.8269 2.2162 16 1 7.6421 9.0034 2.7970 17 6 9.5674 9.7553 2.2309 18 7 10.6562 9.5402 1.5234 19 14 9.4113 11.3091 3.2559 20 1 8.1003 11.3124 3.9535 21 1 10.5060 11.3531 4.2583 22 1 9.5032 12.4976 2.3702 23 6 7.6357 6.6231 1.3588 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.9337 0.9286 0.8891 32 1 3.9330 0.9288 -0.8909 33 1 6.0277 2.3724 -0.0006 34 1 5.5222 5.0055 -0.8882 35 1 5.5224 5.0039 0.8918 36 1 7.7795 3.9762 0.8898 37 1 7.7786 3.9780 -0.8902 38 1 9.9014 5.1460 0.5208 39 1 9.8312 5.9635 -1.0749 40 1 9.9713 8.0875 -0.1266 41 1 10.6940 7.2205 1.2555 42 1 11.3772 10.1891 1.5334 43 1 6.6339 7.0524 1.3597 44 1 7.7433 5.9110 2.1771 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714865448.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:18 Heat of formation + Delta-G solvation = -69.152996 kcal Electronic energy + Delta-G solvation = -20075.411664 eV Core-core repulsion = 17026.116469 eV Total energy + Delta-G solvation = -3049.295195 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.76201 -39.40937 -36.64685 -36.05008 -34.73751 -32.64578 -31.42070 -30.55186 -28.20746 -26.69722 -25.31767 -23.47470 -22.07059 -21.80310 -21.46997 -20.69096 -18.87539 -17.88127 -17.09886 -16.88322 -16.80882 -16.44643 -15.89269 -15.57247 -15.05451 -14.80590 -14.49847 -14.17498 -13.90156 -13.76186 -13.54978 -13.31919 -13.20668 -13.05484 -12.82376 -12.66930 -12.24766 -12.15290 -12.05969 -11.98666 -11.84460 -11.81434 -11.55695 -11.42543 -11.39668 -11.33014 -10.79093 -10.72615 -10.04757 -8.90078 -7.86908 -5.22105 1.43198 1.44485 1.55106 1.70428 2.27387 2.47920 3.30760 3.66472 3.77651 3.85355 3.96899 3.98482 4.09292 4.15775 4.32569 4.37352 4.42453 4.50742 4.61852 4.67813 4.69362 4.75528 4.82202 4.91325 4.96835 5.00385 5.04151 5.13504 5.13825 5.18056 5.25992 5.30555 5.41465 5.43504 5.48785 5.52349 5.54994 5.70392 5.78732 6.19947 6.64032 7.09952 7.34486 7.77801 8.42002 9.23588 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036666 B = 0.002746 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.460917 B =10193.679932 C =10811.778035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.131 4.131 5 C 0.500 3.500 6 O -0.597 6.597 7 N -0.717 5.717 8 C 0.121 3.879 9 C -0.097 4.097 10 C -0.086 4.086 11 H 0.070 0.930 12 C -0.122 4.122 13 C 0.180 3.820 14 N -0.632 5.632 15 C -0.243 4.243 16 H 0.078 0.922 17 C -0.070 4.070 18 N -0.951 5.951 19 Si 0.980 3.020 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.133 3.867 24 H 0.047 0.953 25 H 0.065 0.935 26 H 0.049 0.951 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.419 0.581 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.006 0.994 41 H 0.005 0.995 42 H 0.247 0.753 43 H 0.030 0.970 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.048 -23.303 -5.521 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.170 4.170 5 C 0.288 3.712 6 O -0.478 6.478 7 N -0.370 5.370 8 C -0.003 4.003 9 C -0.135 4.135 10 C -0.106 4.106 11 H 0.088 0.912 12 C -0.160 4.160 13 C 0.055 3.945 14 N -0.358 5.358 15 C -0.372 4.372 16 H 0.096 0.904 17 C -0.263 4.263 18 N -0.601 5.601 19 Si 0.808 3.192 20 H -0.192 1.192 21 H -0.216 1.216 22 H -0.218 1.218 23 C 0.008 3.992 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.256 0.744 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.491 -22.478 -5.462 26.289 hybrid contribution 0.484 1.371 0.640 1.588 sum -12.008 -21.107 -4.822 24.758 Atomic orbital electron populations 1.21801 0.96088 1.02046 1.01500 1.21517 0.95858 0.95124 1.03131 1.21356 0.93702 0.97612 1.01778 1.21740 0.97200 0.91241 1.06832 1.21581 0.82073 0.92971 0.74552 1.90706 1.56687 1.48637 1.51728 1.45969 1.07241 1.09058 1.74726 1.21240 0.94844 0.83211 1.00994 1.21577 0.92429 0.95130 1.04401 1.22161 0.95665 0.96071 0.96713 0.91178 1.22770 0.95253 0.96981 1.00973 1.20966 0.88892 0.92748 0.91901 1.44863 1.16947 1.20261 1.53761 1.19501 1.01527 0.96056 1.20154 0.90400 1.25689 0.96389 1.02239 1.01945 1.70209 1.07546 1.36694 1.45615 0.84991 0.77582 0.78943 0.77717 1.19183 1.21641 1.21777 1.21828 0.91594 0.89875 0.95881 0.93357 0.91636 0.93217 0.90827 0.90636 0.93114 0.93360 0.86386 0.86074 0.74382 0.92787 0.93605 0.90026 0.88398 0.90400 0.89899 0.97536 0.97715 0.94401 0.95187 0.95699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.23 5.93 30.59 0.18 -1.05 16 3 C -0.11 -1.67 4.50 30.59 0.14 -1.53 16 4 C -0.13 -1.60 5.70 29.85 0.17 -1.43 16 5 C 0.50 10.97 7.83 87.66 0.69 11.65 16 6 O -0.60 -19.76 15.98 -3.06 -0.05 -19.81 16 7 N -0.72 -12.95 5.56 -463.05 -2.57 -15.53 16 8 C 0.12 2.91 5.55 86.38 0.48 3.39 16 9 C -0.10 -2.08 4.84 30.59 0.15 -1.94 16 10 C -0.09 -2.76 3.04 -9.40 -0.03 -2.78 16 11 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 12 C -0.12 -4.22 6.42 31.80 0.20 -4.02 16 13 C 0.18 9.09 5.38 86.74 0.47 9.55 16 14 N -0.63 -33.86 3.39 -691.89 -2.35 -36.21 16 15 C -0.24 -14.29 10.28 84.04 0.86 -13.43 16 16 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 17 C -0.07 -4.14 5.49 84.86 0.47 -3.67 16 18 N -0.95 -59.01 10.31 21.65 0.22 -58.79 16 19 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 22 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 23 C 0.13 5.55 6.04 86.85 0.52 6.07 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 27 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 30 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 31 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 4.21 8.47 -92.71 -0.79 3.43 16 34 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.05 1.35 7.59 -2.39 -0.02 1.33 16 36 H 0.08 1.61 8.03 -2.39 -0.02 1.59 16 37 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.08 2.39 8.04 -2.39 -0.02 2.38 16 39 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 40 H 0.01 0.36 7.38 -2.38 -0.02 0.35 16 41 H 0.00 0.26 7.50 -2.38 -0.02 0.24 16 42 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 43 H 0.03 1.27 8.10 -2.39 -0.02 1.25 16 44 H 0.03 1.01 7.95 -2.39 -0.02 0.99 16 Total: -1.00 -77.33 352.00 2.45 -74.88 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: 0.16 Total: 6.28 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.01 Total: -0.26 kcal Atomic # 7 Polarization: -105.83 SS G_CDS: -4.70 Total: -110.53 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -77.33 2.45 -74.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714865448.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.728 kcal (2) G-P(sol) polarization free energy of solvation -77.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds