Wall clock time and date at job start Mon Mar 30 2020 00:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46977 * 2 1 4 4 C 1.52992 * 109.47274 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47535 * 180.02562 * 9 8 7 11 11 H 1.09004 * 110.88742 * 54.29041 * 10 9 8 12 12 C 1.55153 * 111.00740 * 178.17610 * 10 9 8 13 13 C 1.54329 * 102.94091 * 153.57364 * 12 10 9 14 14 N 1.47016 * 107.27128 * 337.80656 * 13 12 10 15 15 C 1.36936 * 125.64676 * 178.97349 * 14 13 12 16 16 H 1.08001 * 120.00128 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00182 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99669 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47287 * 60.00207 * 19 17 15 21 21 H 1.48503 * 109.46889 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47101 * 299.99575 * 19 17 15 23 23 C 1.47463 * 108.72584 * 358.97761 * 14 13 12 24 24 H 1.08988 * 109.47430 * 300.00270 * 1 2 3 25 25 H 1.08997 * 109.46441 * 60.00731 * 1 2 3 26 26 H 1.09000 * 109.46348 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47785 * 240.00098 * 2 1 3 28 28 H 1.09000 * 109.46944 * 119.99173 * 2 1 3 29 29 H 1.09004 * 109.47166 * 59.99234 * 3 2 1 30 30 H 1.09005 * 109.46988 * 299.99622 * 3 2 1 31 31 H 1.09004 * 109.47330 * 59.99726 * 4 3 2 32 32 H 1.08997 * 109.47279 * 300.00213 * 4 3 2 33 33 H 0.96995 * 120.00015 * 359.72695 * 7 5 4 34 34 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 35 35 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 36 36 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 37 37 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 38 38 H 1.09000 * 110.72316 * 271.93514 * 12 10 9 39 39 H 1.09002 * 110.72078 * 35.03735 * 12 10 9 40 40 H 1.09000 * 109.88222 * 97.22566 * 13 12 10 41 41 H 1.09004 * 109.88053 * 218.23565 * 13 12 10 42 42 H 0.96998 * 120.00051 * 180.02562 * 18 17 15 43 43 H 1.09005 * 110.34772 * 265.24915 * 23 14 13 44 44 H 1.09001 * 110.40822 * 142.91498 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2841 3.7853 -0.0004 7 7 5.3974 3.1098 -0.0001 8 6 5.8856 4.4910 -0.0002 9 6 7.4156 4.4911 -0.0009 10 6 7.9256 5.9336 -0.0003 11 1 7.4951 6.4976 0.8271 12 6 9.4759 5.9754 0.0450 13 6 9.8051 7.3243 -0.6285 14 7 8.6496 7.6903 -1.4604 15 6 8.5347 8.8310 -2.2093 16 1 7.6412 9.0084 -2.7894 17 6 9.5667 9.7593 -2.2229 18 7 10.6558 9.5429 -1.5163 19 14 9.4102 11.3150 -3.2450 20 1 8.2331 12.0940 -2.7839 21 1 10.6381 12.1355 -3.0888 22 1 9.2350 10.9526 -4.6744 23 6 7.6343 6.6260 -1.3551 24 1 -0.3633 0.5138 0.8898 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8908 33 1 6.0277 2.3726 0.0042 34 1 5.5221 5.0048 -0.8901 35 1 5.5223 5.0049 0.8899 36 1 7.7794 3.9771 0.8889 37 1 7.7786 3.9774 -0.8910 38 1 9.8322 5.9615 1.0751 39 1 9.9008 5.1455 -0.5197 40 1 9.9711 8.0875 0.1318 41 1 10.6945 7.2209 -1.2502 42 1 11.3768 10.1917 -1.5254 43 1 7.7430 5.9161 -2.1751 44 1 6.6324 7.0552 -1.3542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714865449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:21 Heat of formation + Delta-G solvation = -47.111737 kcal Electronic energy + Delta-G solvation = -20074.060794 eV Core-core repulsion = 17025.721379 eV Total energy + Delta-G solvation = -3048.339414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80892 -37.80821 -35.78451 -35.05949 -33.00375 -31.28398 -30.36056 -28.92714 -26.71623 -25.12994 -24.18759 -22.24649 -21.38933 -20.50429 -19.96320 -19.37915 -16.99304 -16.84790 -16.30347 -15.81938 -15.43616 -14.84556 -14.53310 -14.04255 -13.94809 -13.92790 -13.58930 -13.00058 -12.61102 -12.43273 -12.21258 -11.92995 -11.80573 -11.62585 -11.54816 -11.44375 -11.28273 -11.06407 -10.87013 -10.84701 -10.72314 -10.13294 -10.07145 -9.93925 -9.78762 -9.68847 -9.56909 -9.06998 -8.55235 -6.77631 -5.66479 -2.99490 2.59641 3.13189 3.44029 3.47830 3.49263 4.51441 4.54543 4.56361 4.64618 4.91356 4.99150 5.00001 5.12837 5.18417 5.30277 5.38667 5.51374 5.52611 5.53413 5.63149 5.64677 5.68908 5.79631 5.84627 5.91790 5.96541 6.04723 6.09294 6.16218 6.24154 6.41486 6.44160 6.58551 6.63209 6.77186 7.01073 7.43997 7.61021 7.67766 7.87299 8.18178 8.31502 9.27559 9.88008 10.54615 11.45324 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.002746 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.982814 B =10195.155727 C =10813.081559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.507 3.493 6 O -0.541 6.541 7 N -0.732 5.732 8 C 0.116 3.884 9 C -0.115 4.115 10 C -0.101 4.101 11 H 0.075 0.925 12 C -0.138 4.138 13 C 0.177 3.823 14 N -0.607 5.607 15 C -0.227 4.227 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.924 5.924 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.140 3.860 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.399 0.601 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.252 0.748 43 H 0.017 0.983 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.777 -20.533 5.184 24.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.181 4.181 5 C 0.293 3.707 6 O -0.418 6.418 7 N -0.383 5.383 8 C -0.007 4.007 9 C -0.154 4.154 10 C -0.121 4.121 11 H 0.094 0.906 12 C -0.177 4.177 13 C 0.052 3.948 14 N -0.333 5.333 15 C -0.355 4.355 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.572 5.572 19 Si 0.743 3.257 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.212 1.212 23 C 0.014 3.986 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.232 0.768 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.205 -19.640 5.128 23.686 hybrid contribution 0.430 0.513 -0.529 0.853 sum -11.775 -19.128 4.599 22.927 Atomic orbital electron populations 1.21763 0.95726 1.01476 1.02094 1.21553 0.96153 0.96640 1.01911 1.21381 0.92770 0.96520 1.03722 1.21704 0.98176 0.93979 1.04239 1.20760 0.82260 0.91722 0.75955 1.90719 1.55297 1.46623 1.49175 1.46140 1.07067 1.09476 1.75653 1.21486 0.94491 0.81967 1.02723 1.21737 0.93225 0.98262 1.02142 1.22272 0.96648 0.93500 0.99643 0.90630 1.22901 0.94265 1.00428 1.00081 1.21123 0.90180 0.90095 0.93356 1.44492 1.15114 1.19640 1.54091 1.19036 1.01506 0.94811 1.20182 0.90544 1.24808 0.96520 0.98956 1.00369 1.69959 1.06942 1.36028 1.44222 0.86191 0.76775 0.82938 0.79824 1.21174 1.21633 1.21205 1.21619 0.93188 0.90728 0.93112 0.92648 0.92621 0.92833 0.92003 0.92045 0.91216 0.91152 0.88992 0.89055 0.76757 0.91014 0.91566 0.91729 0.91340 0.92382 0.92600 0.93730 0.94115 0.93787 0.96538 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.11 -0.89 4.50 -26.73 -0.12 -1.01 16 4 C -0.14 -1.07 5.70 -27.89 -0.16 -1.23 16 5 C 0.51 5.97 7.83 -10.98 -0.09 5.88 16 6 O -0.54 -8.88 15.98 5.56 0.09 -8.79 16 7 N -0.73 -7.63 5.56 -60.29 -0.33 -7.96 16 8 C 0.12 1.50 5.55 -4.04 -0.02 1.48 16 9 C -0.12 -1.45 4.84 -26.73 -0.13 -1.57 16 10 C -0.10 -1.71 3.04 -88.47 -0.27 -1.97 16 11 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 12 C -0.14 -2.54 6.42 -24.90 -0.16 -2.70 16 13 C 0.18 4.38 5.37 -3.06 -0.02 4.36 16 14 N -0.61 -15.96 3.40 -170.03 -0.58 -16.53 16 15 C -0.23 -6.52 10.28 -15.06 -0.15 -6.68 16 16 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 18 N -0.92 -27.71 10.31 55.49 0.57 -27.14 16 19 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.14 2.93 6.04 -2.51 -0.02 2.92 16 24 H 0.05 0.36 8.14 -51.94 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 30 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.40 2.88 8.47 -40.82 -0.35 2.53 16 34 H 0.07 1.07 7.60 -51.93 -0.39 0.68 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.83 8.04 -51.93 -0.42 0.42 16 38 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.04 1.22 7.38 -51.93 -0.38 0.83 16 41 H 0.04 1.11 7.50 -51.93 -0.39 0.72 16 42 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.02 0.35 7.96 -51.93 -0.41 -0.06 16 44 H 0.04 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 352.01 15.07 5.30 5.30 Total: -1.00 -33.51 352.01 -9.21 -42.71 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -8.22 Total: -2.71 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -1.02 Total: -2.48 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: -0.34 Total: -51.63 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.51 -9.21 -42.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714865449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.398 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds