Wall clock time and date at job start Mon Mar 30 2020 00:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46977 * 2 1 4 4 C 1.52992 * 109.47274 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.46494 * 119.99635 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47001 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47535 * 180.02562 * 9 8 7 11 11 H 1.09004 * 110.88742 * 54.29041 * 10 9 8 12 12 C 1.55153 * 111.00740 * 178.17610 * 10 9 8 13 13 C 1.54329 * 102.94091 * 153.57364 * 12 10 9 14 14 N 1.47016 * 107.27128 * 337.80656 * 13 12 10 15 15 C 1.36936 * 125.64676 * 178.97349 * 14 13 12 16 16 H 1.08001 * 120.00128 * 179.97438 * 15 14 13 17 17 C 1.38819 * 120.00182 * 359.97438 * 15 14 13 18 18 N 1.31614 * 119.99669 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99939 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47287 * 60.00207 * 19 17 15 21 21 H 1.48503 * 109.46889 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47101 * 299.99575 * 19 17 15 23 23 C 1.47463 * 108.72584 * 358.97761 * 14 13 12 24 24 H 1.08988 * 109.47430 * 300.00270 * 1 2 3 25 25 H 1.08997 * 109.46441 * 60.00731 * 1 2 3 26 26 H 1.09000 * 109.46348 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47785 * 240.00098 * 2 1 3 28 28 H 1.09000 * 109.46944 * 119.99173 * 2 1 3 29 29 H 1.09004 * 109.47166 * 59.99234 * 3 2 1 30 30 H 1.09005 * 109.46988 * 299.99622 * 3 2 1 31 31 H 1.09004 * 109.47330 * 59.99726 * 4 3 2 32 32 H 1.08997 * 109.47279 * 300.00213 * 4 3 2 33 33 H 0.96995 * 120.00015 * 359.72695 * 7 5 4 34 34 H 1.09005 * 109.47306 * 299.99972 * 8 7 5 35 35 H 1.09002 * 109.47518 * 60.00210 * 8 7 5 36 36 H 1.09005 * 109.46767 * 299.99934 * 9 8 7 37 37 H 1.08996 * 109.47766 * 59.99412 * 9 8 7 38 38 H 1.09000 * 110.72316 * 271.93514 * 12 10 9 39 39 H 1.09002 * 110.72078 * 35.03735 * 12 10 9 40 40 H 1.09000 * 109.88222 * 97.22566 * 13 12 10 41 41 H 1.09004 * 109.88053 * 218.23565 * 13 12 10 42 42 H 0.96998 * 120.00051 * 180.02562 * 18 17 15 43 43 H 1.09005 * 110.34772 * 265.24915 * 23 14 13 44 44 H 1.09001 * 110.40822 * 142.91498 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2841 3.7853 -0.0004 7 7 5.3974 3.1098 -0.0001 8 6 5.8856 4.4910 -0.0002 9 6 7.4156 4.4911 -0.0009 10 6 7.9256 5.9336 -0.0003 11 1 7.4951 6.4976 0.8271 12 6 9.4759 5.9754 0.0450 13 6 9.8051 7.3243 -0.6285 14 7 8.6496 7.6903 -1.4604 15 6 8.5347 8.8310 -2.2093 16 1 7.6412 9.0084 -2.7894 17 6 9.5667 9.7593 -2.2229 18 7 10.6558 9.5429 -1.5163 19 14 9.4102 11.3150 -3.2450 20 1 8.2331 12.0940 -2.7839 21 1 10.6381 12.1355 -3.0888 22 1 9.2350 10.9526 -4.6744 23 6 7.6343 6.6260 -1.3551 24 1 -0.3633 0.5138 0.8898 25 1 -0.3632 0.5137 -0.8901 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8935 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8901 29 1 1.6766 1.9564 0.8899 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 0.9286 -0.8891 32 1 3.9329 0.9289 0.8908 33 1 6.0277 2.3726 0.0042 34 1 5.5221 5.0048 -0.8901 35 1 5.5223 5.0049 0.8899 36 1 7.7794 3.9771 0.8889 37 1 7.7786 3.9774 -0.8910 38 1 9.8322 5.9615 1.0751 39 1 9.9008 5.1455 -0.5197 40 1 9.9711 8.0875 0.1318 41 1 10.6945 7.2209 -1.2502 42 1 11.3768 10.1917 -1.5254 43 1 7.7430 5.9161 -2.1751 44 1 6.6324 7.0552 -1.3542 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714865449.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:20 Heat of formation + Delta-G solvation = -68.922292 kcal Electronic energy + Delta-G solvation = -20075.006570 eV Core-core repulsion = 17025.721379 eV Total energy + Delta-G solvation = -3049.285191 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.76352 -39.40671 -36.64591 -36.05027 -34.73478 -32.64450 -31.42000 -30.55166 -28.20647 -26.69191 -25.31623 -23.47357 -22.07043 -21.80066 -21.46947 -20.69123 -18.87141 -17.88229 -17.09697 -16.87850 -16.80582 -16.44136 -15.89252 -15.57839 -15.05497 -14.80626 -14.49859 -14.17692 -13.89927 -13.75531 -13.54431 -13.31868 -13.20679 -13.05421 -12.79161 -12.65338 -12.25300 -12.15507 -12.06345 -12.05121 -11.84456 -11.80469 -11.55792 -11.42571 -11.39373 -11.32670 -10.79102 -10.70852 -10.04744 -8.89846 -7.86234 -5.21589 1.43145 1.47008 1.53286 1.70434 2.27380 2.48527 3.31086 3.66562 3.77701 3.85398 3.96927 3.98503 4.09285 4.16062 4.32564 4.37248 4.42429 4.50746 4.61870 4.67807 4.69418 4.75430 4.82192 4.91309 4.96846 5.00425 5.04127 5.13506 5.13910 5.18060 5.26007 5.30571 5.41467 5.43283 5.48804 5.52407 5.54992 5.70415 5.78825 6.20143 6.64020 7.10224 7.34476 7.78205 8.42477 9.23857 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.036689 B = 0.002746 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.982814 B =10195.155727 C =10813.081559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.131 4.131 5 C 0.500 3.500 6 O -0.597 6.597 7 N -0.717 5.717 8 C 0.121 3.879 9 C -0.097 4.097 10 C -0.086 4.086 11 H 0.070 0.930 12 C -0.122 4.122 13 C 0.181 3.819 14 N -0.632 5.632 15 C -0.246 4.246 16 H 0.078 0.922 17 C -0.069 4.069 18 N -0.951 5.951 19 Si 0.980 3.020 20 H -0.278 1.278 21 H -0.292 1.292 22 H -0.276 1.276 23 C 0.133 3.867 24 H 0.049 0.951 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.419 0.581 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.006 0.994 41 H 0.004 0.996 42 H 0.247 0.753 43 H 0.025 0.975 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.980 -23.258 5.509 26.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.170 4.170 5 C 0.288 3.712 6 O -0.477 6.477 7 N -0.370 5.370 8 C -0.003 4.003 9 C -0.135 4.135 10 C -0.106 4.106 11 H 0.088 0.912 12 C -0.160 4.160 13 C 0.056 3.944 14 N -0.358 5.358 15 C -0.375 4.375 16 H 0.096 0.904 17 C -0.262 4.262 18 N -0.600 5.600 19 Si 0.808 3.192 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.202 1.202 23 C 0.008 3.992 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.256 0.744 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.025 0.975 41 H 0.023 0.977 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -12.407 -22.428 5.454 26.205 hybrid contribution 0.454 1.362 -0.644 1.574 sum -11.953 -21.065 4.810 24.693 Atomic orbital electron populations 1.21799 0.96089 1.02046 1.01500 1.21520 0.95859 0.95122 1.03129 1.21356 0.93702 0.97613 1.01778 1.21739 0.97200 0.91239 1.06834 1.21582 0.82070 0.92971 0.74551 1.90702 1.56691 1.48634 1.51717 1.45971 1.07243 1.09054 1.74737 1.21239 0.94842 0.83214 1.00992 1.21576 0.92433 0.95130 1.04396 1.22160 0.95666 0.96058 0.96727 0.91181 1.22763 0.95252 0.96984 1.01003 1.20943 0.88882 0.92703 0.91912 1.44856 1.16877 1.20179 1.53920 1.19430 1.01573 0.96078 1.20451 0.90433 1.25690 0.96358 1.02233 1.01907 1.70190 1.07468 1.36780 1.45578 0.85133 0.76645 0.78962 0.78488 1.20408 1.21761 1.20237 1.21838 0.91587 0.89866 0.95879 0.93210 0.93364 0.91636 0.90827 0.90634 0.93112 0.93359 0.86386 0.86073 0.74383 0.93605 0.92793 0.88408 0.90025 0.89931 0.90402 0.97528 0.97744 0.94382 0.95720 0.95170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.23 5.93 30.60 0.18 -1.05 16 3 C -0.11 -1.67 4.50 30.59 0.14 -1.53 16 4 C -0.13 -1.60 5.70 29.85 0.17 -1.43 16 5 C 0.50 10.98 7.83 87.66 0.69 11.66 16 6 O -0.60 -19.77 15.98 -3.03 -0.05 -19.81 16 7 N -0.72 -12.98 5.56 -463.05 -2.57 -15.55 16 8 C 0.12 2.92 5.55 86.38 0.48 3.40 16 9 C -0.10 -2.09 4.84 30.59 0.15 -1.94 16 10 C -0.09 -2.76 3.04 -9.40 -0.03 -2.79 16 11 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 12 C -0.12 -4.24 6.42 31.78 0.20 -4.03 16 13 C 0.18 9.13 5.37 86.73 0.47 9.60 16 14 N -0.63 -33.91 3.40 -691.87 -2.35 -36.26 16 15 C -0.25 -14.49 10.28 84.04 0.86 -13.62 16 16 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 17 C -0.07 -4.09 5.49 84.86 0.47 -3.62 16 18 N -0.95 -58.98 10.31 21.65 0.22 -58.76 16 19 Si 0.98 47.35 29.55 68.60 2.03 49.38 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 C 0.13 5.56 6.04 86.85 0.52 6.09 16 24 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 30 H 0.05 0.95 8.10 -2.38 -0.02 0.93 16 31 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.42 4.23 8.47 -92.71 -0.79 3.44 16 34 H 0.05 1.35 7.60 -2.38 -0.02 1.33 16 35 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.40 8.04 -2.39 -0.02 2.38 16 40 H 0.01 0.37 7.38 -2.39 -0.02 0.35 16 41 H 0.00 0.24 7.50 -2.38 -0.02 0.23 16 42 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 43 H 0.03 1.01 7.96 -2.38 -0.02 0.99 16 44 H 0.03 1.28 8.10 -2.39 -0.02 1.26 16 Total: -1.00 -77.26 352.01 2.45 -74.81 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.16 Total: 6.55 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: 5.01 Total: -0.36 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -4.70 Total: -110.57 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.03 Total: 49.38 kcal Total: -77.26 2.45 -74.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714865449.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.889 kcal (2) G-P(sol) polarization free energy of solvation -77.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds