Wall clock time and date at job start Mon Mar 30 2020 00:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00140 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00054 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47199 * 34.99931 * 8 7 5 10 10 C 1.53002 * 109.47076 * 154.99680 * 8 7 5 11 11 C 1.53002 * 109.46864 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47438 * 299.99976 * 11 10 8 13 13 H 1.09001 * 109.47101 * 300.00465 * 12 11 10 14 14 N 1.46499 * 109.47076 * 180.02562 * 12 11 10 15 15 C 1.36935 * 119.99728 * 155.00630 * 14 12 11 16 16 H 1.08003 * 119.99968 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00151 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99918 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46865 * 89.99911 * 19 17 15 21 21 H 1.48488 * 109.47228 * 210.00326 * 19 17 15 22 22 H 1.48506 * 109.46846 * 330.00540 * 19 17 15 23 23 C 1.53009 * 109.46637 * 60.00293 * 12 11 10 24 24 C 1.52996 * 109.47084 * 274.99976 * 8 7 5 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 34 34 H 0.97005 * 119.99680 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47469 * 300.00232 * 10 8 7 36 36 H 1.09001 * 109.46901 * 60.00069 * 10 8 7 37 37 H 1.08997 * 109.47163 * 60.00761 * 11 10 8 38 38 H 1.09002 * 109.46730 * 180.02562 * 11 10 8 39 39 H 0.97000 * 119.99947 * 335.00087 * 14 12 11 40 40 H 0.97004 * 119.99546 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.46941 * 59.99840 * 23 12 11 42 42 H 1.09004 * 109.46567 * 179.97438 * 23 12 11 43 43 H 1.08999 * 109.47646 * 299.99559 * 24 8 7 44 44 H 1.09002 * 109.47281 * 60.00145 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7850 0.0004 7 7 5.3975 3.1094 -0.0009 8 6 5.8859 4.4906 -0.0009 9 1 5.2138 5.1136 0.5892 10 6 7.2889 4.5353 0.6078 11 6 7.7987 5.9779 0.6084 12 6 7.8491 6.5017 -0.8283 13 1 8.5212 5.8791 -1.4187 14 7 8.3378 7.8828 -0.8276 15 6 8.9475 8.3938 -1.9422 16 1 9.0684 7.7785 -2.8216 17 6 9.4110 9.7022 -1.9416 18 7 9.9975 10.1932 -3.0127 19 14 9.2025 10.7662 -0.4203 20 1 10.3877 10.6083 0.4604 21 1 9.0726 12.1889 -0.8253 22 1 7.9813 10.3469 0.3134 23 6 6.4459 6.4569 -1.4368 24 6 5.9363 5.0137 -1.4377 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9286 -0.8908 34 1 6.0278 2.3720 -0.0016 35 1 7.2530 4.1626 1.6314 36 1 7.9610 3.9123 0.0176 37 1 7.1266 6.6006 1.1988 38 1 8.7984 6.0098 1.0416 39 1 8.2294 8.4353 -0.0377 40 1 10.3211 11.1077 -3.0123 41 1 5.7738 7.0796 -0.8464 42 1 6.4817 6.8305 -2.4602 43 1 6.6084 4.3908 -2.0279 44 1 4.9367 4.9818 -1.8713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715184139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:18 Heat of formation + Delta-G solvation = -63.788245 kcal Electronic energy + Delta-G solvation = -20495.929803 eV Core-core repulsion = 17446.867241 eV Total energy + Delta-G solvation = -3049.062562 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.07533 -38.14297 -35.67286 -34.89162 -33.05858 -31.25626 -30.53424 -30.43178 -27.74969 -24.93504 -23.18092 -22.44831 -21.49268 -20.84184 -20.36296 -19.57609 -17.59425 -16.91888 -16.27479 -16.19108 -15.07084 -14.84469 -14.41403 -14.04256 -14.03309 -13.78795 -13.61531 -13.02247 -12.90655 -12.62823 -12.60628 -12.16528 -11.97694 -11.75258 -11.62368 -11.48699 -11.29446 -11.11648 -10.87726 -10.87440 -10.86353 -10.64934 -10.24301 -10.15889 -9.80874 -9.76542 -9.55053 -8.98047 -8.86155 -7.23825 -5.74785 -3.09899 2.60106 3.11481 3.39607 3.42876 3.47315 4.49955 4.55826 4.61417 4.63964 4.83131 4.95071 4.97642 5.01795 5.13556 5.17938 5.36874 5.48125 5.51002 5.52670 5.54820 5.57197 5.62731 5.63723 5.79625 5.80880 5.83920 5.94650 5.96094 6.08611 6.13134 6.19393 6.23021 6.37243 6.47753 6.58285 6.65680 6.91310 7.06761 7.46362 8.02087 8.19969 8.44621 9.23485 9.96273 10.16375 11.43644 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.002995 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.299633 B = 9345.267168 C = 9436.937491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.106 4.106 4 C -0.141 4.141 5 C 0.509 3.491 6 O -0.540 6.540 7 N -0.728 5.728 8 C 0.143 3.857 9 H 0.086 0.914 10 C -0.118 4.118 11 C -0.124 4.124 12 C 0.182 3.818 13 H 0.055 0.945 14 N -0.750 5.750 15 C -0.241 4.241 16 H 0.090 0.910 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.884 3.116 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.277 1.277 23 C -0.132 4.132 24 C -0.123 4.123 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.397 0.603 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 -22.113 8.554 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.144 4.144 4 C -0.181 4.181 5 C 0.295 3.705 6 O -0.417 6.417 7 N -0.379 5.379 8 C 0.040 3.960 9 H 0.104 0.896 10 C -0.157 4.157 11 C -0.163 4.163 12 C 0.072 3.928 13 H 0.073 0.927 14 N -0.392 5.392 15 C -0.371 4.371 16 H 0.108 0.892 17 C -0.193 4.193 18 N -0.583 5.583 19 Si 0.715 3.285 20 H -0.211 1.211 21 H -0.218 1.218 22 H -0.203 1.203 23 C -0.173 4.173 24 C -0.163 4.163 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.231 0.769 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.087 0.913 43 H 0.078 0.922 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.200 -21.390 8.326 26.478 hybrid contribution 0.249 0.553 0.931 1.112 sum -12.950 -20.837 9.257 26.221 Atomic orbital electron populations 1.21763 0.95731 1.01477 1.02091 1.21548 0.96150 0.96654 1.01898 1.21376 0.92785 0.96499 1.03700 1.21712 0.98161 0.94076 1.04194 1.20742 0.82345 0.91647 0.75759 1.90714 1.55268 1.46555 1.49145 1.46209 1.06979 1.09186 1.75510 1.21095 0.95460 0.81854 0.97634 0.89626 1.21730 0.95042 0.98437 1.00453 1.21793 1.01189 0.94382 0.98944 1.20217 0.92877 0.86684 0.92975 0.92702 1.42801 1.71231 1.09847 1.15293 1.19079 1.29099 0.96278 0.92611 0.89244 1.24681 1.00653 0.97010 0.96979 1.69706 1.44985 1.15790 1.27833 0.86545 0.77842 0.80459 0.83675 1.21145 1.21813 1.20291 1.22197 0.98839 0.93792 1.02510 1.21893 1.01073 0.97873 0.95419 0.92617 0.92832 0.92662 0.92008 0.92066 0.91240 0.91165 0.89119 0.89012 0.76902 0.91867 0.91383 0.92123 0.91286 0.80706 0.93119 0.92644 0.91349 0.92161 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.15 0.37 -0.60 16 2 C -0.12 -0.79 5.93 -26.74 -0.16 -0.95 16 3 C -0.11 -0.88 4.50 -26.73 -0.12 -1.00 16 4 C -0.14 -1.06 5.70 -27.88 -0.16 -1.22 16 5 C 0.51 5.87 7.79 -10.98 -0.09 5.79 16 6 O -0.54 -8.69 15.64 5.56 0.09 -8.60 16 7 N -0.73 -7.42 5.08 -53.81 -0.27 -7.70 16 8 C 0.14 1.83 2.45 -67.93 -0.17 1.67 16 9 H 0.09 1.28 7.58 -51.93 -0.39 0.89 16 10 C -0.12 -1.38 5.39 -26.73 -0.14 -1.52 16 11 C -0.12 -1.86 5.39 -26.73 -0.14 -2.00 16 12 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 13 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 14 N -0.75 -17.73 4.93 -53.42 -0.26 -17.99 16 15 C -0.24 -6.80 10.41 -15.06 -0.16 -6.95 16 16 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 17 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 18 N -0.94 -29.57 13.97 55.49 0.78 -28.79 16 19 Si 0.88 22.34 27.74 -169.99 -4.71 17.63 16 20 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 22 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 23 C -0.13 -2.37 5.51 -26.70 -0.15 -2.52 16 24 C -0.12 -1.81 5.50 -26.70 -0.15 -1.95 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 31 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.40 2.80 8.60 -40.82 -0.35 2.45 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.36 8.41 5.66 -40.82 -0.23 8.18 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 349.47 15.07 5.27 5.27 Total: -1.00 -33.37 349.47 -8.64 -42.01 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -8.17 Total: 6.24 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -1.34 Total: -8.06 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.24 Total: -54.48 kcal Atomic # 8 Polarization: -8.69 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.37 -8.64 -42.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715184139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.781 kcal (2) G-P(sol) polarization free energy of solvation -33.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds