Wall clock time and date at job start Mon Mar 30 2020 00:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47482 * 2 1 4 4 C 1.53000 * 109.47060 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.46735 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00140 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99767 * 180.02562 * 5 4 3 8 8 C 1.46496 * 120.00054 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47199 * 34.99931 * 8 7 5 10 10 C 1.53002 * 109.47076 * 154.99680 * 8 7 5 11 11 C 1.53002 * 109.46864 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47438 * 299.99976 * 11 10 8 13 13 H 1.09001 * 109.47101 * 300.00465 * 12 11 10 14 14 N 1.46499 * 109.47076 * 180.02562 * 12 11 10 15 15 C 1.36935 * 119.99728 * 155.00630 * 14 12 11 16 16 H 1.08003 * 119.99968 * 359.97438 * 15 14 12 17 17 C 1.38811 * 120.00151 * 180.02562 * 15 14 12 18 18 N 1.31621 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86807 * 119.99918 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46865 * 89.99911 * 19 17 15 21 21 H 1.48488 * 109.47228 * 210.00326 * 19 17 15 22 22 H 1.48506 * 109.46846 * 330.00540 * 19 17 15 23 23 C 1.53009 * 109.46637 * 60.00293 * 12 11 10 24 24 C 1.52996 * 109.47084 * 274.99976 * 8 7 5 25 25 H 1.09001 * 109.47066 * 60.00169 * 1 2 3 26 26 H 1.08996 * 109.47747 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47103 * 300.00247 * 1 2 3 28 28 H 1.09002 * 109.47103 * 239.99753 * 2 1 3 29 29 H 1.08998 * 109.46862 * 120.00565 * 2 1 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 3 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 3 2 1 32 32 H 1.09001 * 109.47194 * 299.99650 * 4 3 2 33 33 H 1.08992 * 109.47399 * 59.99823 * 4 3 2 34 34 H 0.97005 * 119.99680 * 359.97438 * 7 5 4 35 35 H 1.09002 * 109.47469 * 300.00232 * 10 8 7 36 36 H 1.09001 * 109.46901 * 60.00069 * 10 8 7 37 37 H 1.08997 * 109.47163 * 60.00761 * 11 10 8 38 38 H 1.09002 * 109.46730 * 180.02562 * 11 10 8 39 39 H 0.97000 * 119.99947 * 335.00087 * 14 12 11 40 40 H 0.97004 * 119.99546 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.46941 * 59.99840 * 23 12 11 42 42 H 1.09004 * 109.46567 * 179.97438 * 23 12 11 43 43 H 1.08999 * 109.47646 * 299.99559 * 24 8 7 44 44 H 1.09002 * 109.47281 * 60.00145 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4423 -0.0006 5 6 4.0724 2.8632 0.0000 6 8 3.2843 3.7850 0.0004 7 7 5.3975 3.1094 -0.0009 8 6 5.8859 4.4906 -0.0009 9 1 5.2138 5.1136 0.5892 10 6 7.2889 4.5353 0.6078 11 6 7.7987 5.9779 0.6084 12 6 7.8491 6.5017 -0.8283 13 1 8.5212 5.8791 -1.4187 14 7 8.3378 7.8828 -0.8276 15 6 8.9475 8.3938 -1.9422 16 1 9.0684 7.7785 -2.8216 17 6 9.4110 9.7022 -1.9416 18 7 9.9975 10.1932 -3.0127 19 14 9.2025 10.7662 -0.4203 20 1 10.3877 10.6083 0.4604 21 1 9.0726 12.1889 -0.8253 22 1 7.9813 10.3469 0.3134 23 6 6.4459 6.4569 -1.4368 24 6 5.9363 5.0137 -1.4377 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9284 0.8891 33 1 3.9329 0.9286 -0.8908 34 1 6.0278 2.3720 -0.0016 35 1 7.2530 4.1626 1.6314 36 1 7.9610 3.9123 0.0176 37 1 7.1266 6.6006 1.1988 38 1 8.7984 6.0098 1.0416 39 1 8.2294 8.4353 -0.0377 40 1 10.3211 11.1077 -3.0123 41 1 5.7738 7.0796 -0.8464 42 1 6.4817 6.8305 -2.4602 43 1 6.6084 4.3908 -2.0279 44 1 4.9367 4.9818 -1.8713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715184139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:34:17 Heat of formation + Delta-G solvation = -86.273994 kcal Electronic energy + Delta-G solvation = -20496.904858 eV Core-core repulsion = 17446.867241 eV Total energy + Delta-G solvation = -3050.037617 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.06505 -39.39282 -36.61161 -36.07574 -34.62918 -32.94755 -31.71021 -31.39773 -29.15083 -25.89194 -24.83517 -23.67666 -22.47536 -21.85688 -21.35158 -20.90978 -19.54951 -17.86608 -17.29791 -16.88791 -16.77207 -16.17935 -15.65048 -15.21807 -15.01775 -14.88028 -14.67455 -14.55305 -14.35847 -13.76857 -13.60571 -13.36833 -13.20792 -13.11628 -12.90538 -12.43945 -12.30876 -12.16348 -12.06933 -12.06491 -11.97797 -11.84468 -11.80063 -11.47559 -11.42922 -11.21627 -10.91640 -10.73745 -9.98597 -9.30350 -8.02143 -5.34965 1.37365 1.40679 1.47899 1.72286 2.25809 2.48516 3.28527 3.56159 3.74029 3.84770 3.87902 3.97046 4.09053 4.25175 4.32335 4.34803 4.38384 4.50076 4.52929 4.57436 4.62117 4.67799 4.79631 4.87559 4.93570 4.96749 5.02774 5.12174 5.13136 5.14539 5.22518 5.25456 5.30193 5.41012 5.47969 5.51186 5.55843 5.62030 5.78403 6.22673 6.66763 7.08721 7.37404 7.85996 8.04615 9.19502 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.046710 B = 0.002995 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.299633 B = 9345.267168 C = 9436.937491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.132 4.132 5 C 0.503 3.497 6 O -0.593 6.593 7 N -0.713 5.713 8 C 0.150 3.850 9 H 0.063 0.937 10 C -0.106 4.106 11 C -0.117 4.117 12 C 0.175 3.825 13 H 0.048 0.952 14 N -0.754 5.754 15 C -0.226 4.226 16 H 0.056 0.944 17 C -0.069 4.069 18 N -0.985 5.985 19 Si 0.956 3.044 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.255 1.255 23 C -0.125 4.125 24 C -0.113 4.113 25 H 0.047 0.953 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.047 0.953 32 H 0.121 0.879 33 H 0.117 0.883 34 H 0.418 0.582 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.364 0.636 40 H 0.257 0.743 41 H 0.045 0.955 42 H 0.035 0.965 43 H 0.073 0.927 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.810 -24.770 10.952 29.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.156 4.156 3 C -0.144 4.144 4 C -0.171 4.171 5 C 0.291 3.709 6 O -0.473 6.473 7 N -0.365 5.365 8 C 0.045 3.955 9 H 0.082 0.918 10 C -0.144 4.144 11 C -0.156 4.156 12 C 0.067 3.933 13 H 0.066 0.934 14 N -0.396 5.396 15 C -0.357 4.357 16 H 0.074 0.926 17 C -0.260 4.260 18 N -0.636 5.636 19 Si 0.783 3.217 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.180 1.180 23 C -0.166 4.166 24 C -0.152 4.152 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.091 0.909 29 H 0.094 0.906 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.139 0.861 33 H 0.135 0.865 34 H 0.255 0.745 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.197 0.803 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.091 0.909 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.265 -24.135 10.754 29.565 hybrid contribution 0.227 1.309 0.092 1.332 sum -13.038 -22.826 10.847 28.437 Atomic orbital electron populations 1.21798 0.96112 1.02036 1.01489 1.21516 0.95839 0.95182 1.03100 1.21347 0.93740 0.97548 1.01747 1.21744 0.97158 0.91444 1.06759 1.21530 0.82151 0.92842 0.74359 1.90702 1.56610 1.48498 1.51535 1.46014 1.07163 1.08657 1.74675 1.20825 0.96041 0.83061 0.95579 0.91840 1.21650 0.93949 0.96342 1.02454 1.21705 1.01936 0.96473 0.95498 1.20478 0.92483 0.84273 0.96027 0.93408 1.42856 1.71033 1.11833 1.13919 1.19034 1.27943 0.95879 0.92859 0.92623 1.25524 1.01276 0.98699 1.00466 1.69891 1.47091 1.16148 1.30498 0.85392 0.78850 0.77687 0.79740 1.20066 1.22541 1.17978 1.22029 0.98406 0.95997 1.00166 1.21767 1.00241 0.95804 0.97391 0.93407 0.91653 0.93189 0.90901 0.90621 0.93069 0.93445 0.86098 0.86528 0.74492 0.88970 0.89537 0.92111 0.90582 0.80271 0.93449 0.93584 0.94607 0.90873 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.12 -1.22 5.93 30.59 0.18 -1.04 16 3 C -0.11 -1.63 4.50 30.59 0.14 -1.49 16 4 C -0.13 -1.57 5.70 29.85 0.17 -1.40 16 5 C 0.50 10.65 7.79 87.66 0.68 11.33 16 6 O -0.59 -19.05 15.64 -3.01 -0.05 -19.10 16 7 N -0.71 -12.38 5.08 -442.54 -2.25 -14.63 16 8 C 0.15 3.52 2.45 44.99 0.11 3.63 16 9 H 0.06 1.83 7.58 -2.39 -0.02 1.81 16 10 C -0.11 -2.07 5.39 30.60 0.16 -1.90 16 11 C -0.12 -3.22 5.39 30.59 0.16 -3.05 16 12 C 0.18 6.48 2.77 44.99 0.12 6.61 16 13 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 14 N -0.75 -35.44 4.93 -322.93 -1.59 -37.03 16 15 C -0.23 -13.04 10.41 84.03 0.87 -12.17 16 16 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 17 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 18 N -0.99 -64.17 13.97 21.65 0.30 -63.87 16 19 Si 0.96 46.37 27.74 68.60 1.90 48.27 16 20 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 22 H -0.26 -11.30 6.52 99.48 0.65 -10.65 16 23 C -0.13 -4.54 5.51 30.62 0.17 -4.37 16 24 C -0.11 -3.22 5.50 30.61 0.17 -3.05 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 32 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.42 4.00 8.60 -92.70 -0.80 3.21 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.36 16.48 5.66 -92.71 -0.52 15.95 16 40 H 0.26 15.94 8.31 -92.70 -0.77 15.17 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 43 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -76.07 349.47 2.03 -74.04 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.42 Total: 23.96 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.13 Total: -11.64 kcal Atomic # 7 Polarization: -112.00 SS G_CDS: -3.54 Total: -115.53 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.05 Total: -19.10 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.90 Total: 48.27 kcal Total: -76.07 2.03 -74.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715184139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.236 kcal (2) G-P(sol) polarization free energy of solvation -76.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds