Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46530 * 2 1 4 4 C 1.52997 * 109.46908 * 119.99854 * 2 1 3 5 5 H 1.08999 * 109.46983 * 60.00346 * 4 2 1 6 6 C 1.52993 * 109.47602 * 300.00088 * 4 2 1 7 7 N 1.46498 * 109.47559 * 185.00002 * 6 4 2 8 8 C 1.34770 * 119.99990 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00347 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99790 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.47086 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47163 * 180.02562 * 11 10 8 13 13 C 1.53000 * 117.49692 * 243.74899 * 12 11 10 14 14 C 1.52999 * 117.49889 * 175.08483 * 12 11 10 15 15 N 1.46506 * 109.46691 * 180.02562 * 4 2 1 16 16 C 1.36939 * 120.00073 * 274.72524 * 15 4 2 17 17 H 1.08004 * 119.99859 * 0.02562 * 16 15 4 18 18 C 1.38805 * 119.99849 * 180.02562 * 16 15 4 19 19 N 1.31625 * 120.00056 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00155 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46896 * 90.00225 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00265 * 20 18 16 23 23 H 1.48499 * 109.47039 * 330.00065 * 20 18 16 24 24 H 1.08998 * 109.47401 * 299.99857 * 1 2 3 25 25 H 1.09005 * 109.46989 * 60.00258 * 1 2 3 26 26 H 1.08999 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46903 * 240.00143 * 2 1 3 28 28 H 1.09002 * 109.46655 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47149 * 299.99709 * 3 2 1 30 30 H 1.08995 * 109.47411 * 60.00453 * 3 2 1 31 31 H 1.09002 * 109.47378 * 305.00625 * 6 4 2 32 32 H 1.09004 * 109.46895 * 64.99844 * 6 4 2 33 33 H 0.96997 * 120.00009 * 0.02562 * 7 6 4 34 34 H 1.08997 * 109.47232 * 299.99988 * 10 8 7 35 35 H 1.08995 * 109.46819 * 60.00788 * 10 8 7 36 36 H 1.09005 * 109.47191 * 299.99906 * 11 10 8 37 37 H 1.08994 * 109.47135 * 59.99816 * 11 10 8 38 38 H 1.09000 * 115.54526 * 29.41535 * 12 11 10 39 39 H 1.08994 * 117.50038 * 359.97438 * 13 12 11 40 40 H 1.08999 * 117.49361 * 145.02315 * 13 12 11 41 41 H 1.08994 * 117.49958 * 214.97546 * 14 12 11 42 42 H 1.09001 * 117.49637 * 0.02562 * 14 12 11 43 43 H 0.97005 * 119.99811 * 95.00317 * 15 4 2 44 44 H 0.97000 * 119.99835 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8060 -0.1438 4.9151 9 8 1.0448 0.7935 5.0284 10 6 2.4073 -0.7788 6.1424 11 6 1.8972 -0.0576 7.3917 12 6 2.5082 -0.7019 8.6377 13 6 1.5538 -1.3813 9.6218 14 6 2.2110 -0.0483 9.9888 15 7 3.5051 -0.7206 1.2495 16 6 4.1903 -1.6950 0.5740 17 1 3.6506 -2.4637 0.0406 18 6 5.5783 -1.6947 0.5747 19 7 6.2370 -2.6315 -0.0742 20 14 6.5116 -0.3649 1.4966 21 1 6.7585 -0.8100 2.8916 22 1 7.8095 -0.1118 0.8207 23 1 5.7088 0.8843 1.5102 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.8183 1.0503 2.4549 32 1 0.4437 -0.0770 2.5443 33 1 2.7232 -1.3671 3.6010 34 1 2.1190 -1.8291 6.1865 35 1 3.4936 -0.7017 6.0962 36 1 2.1851 0.9928 7.3480 37 1 0.8110 -0.1350 7.4378 38 1 3.4926 -1.1494 8.5008 39 1 0.4907 -1.3690 9.3818 40 1 1.9106 -2.2757 10.1327 41 1 2.9996 -0.0664 10.7410 42 1 1.5798 0.8403 9.9900 43 1 3.9897 -0.0324 1.7316 44 1 7.2070 -2.6311 -0.0740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715491027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = -25.437543 kcal Electronic energy + Delta-G solvation = -20871.073593 eV Core-core repulsion = 17823.674042 eV Total energy + Delta-G solvation = -3047.399551 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.61627 -37.84642 -37.28456 -33.80674 -33.29776 -32.22709 -30.82931 -27.89309 -26.73110 -25.09090 -23.38864 -22.54946 -22.22960 -20.55110 -20.06899 -18.68345 -17.88439 -16.58913 -16.12386 -15.80433 -15.44387 -14.87369 -14.46723 -14.06232 -13.86513 -13.65736 -13.47871 -12.95086 -12.85718 -12.63012 -12.45561 -12.16355 -11.75712 -11.59110 -11.45662 -11.30097 -11.25371 -11.11701 -10.99851 -10.69931 -10.47145 -10.46664 -10.21118 -10.02692 -9.85998 -9.65141 -9.56276 -8.99080 -8.69021 -7.36332 -5.84965 -3.21499 2.88621 3.29873 3.34860 3.39710 3.47056 3.65348 4.51168 4.53377 4.71464 4.77298 4.91388 5.13469 5.17882 5.22118 5.31132 5.38935 5.43716 5.44976 5.55534 5.63216 5.66894 5.72211 5.74260 5.81728 5.87299 5.92573 6.00923 6.04592 6.04719 6.23157 6.25852 6.27390 6.36084 6.52997 6.61690 6.78784 6.88115 6.97318 7.85007 7.90818 8.33705 8.50044 9.11599 9.83843 10.03247 11.33068 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.004956 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.684908 B = 5648.362124 C = 6947.636455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.175 3.825 5 H 0.062 0.938 6 C 0.107 3.893 7 N -0.719 5.719 8 C 0.508 3.492 9 O -0.556 6.556 10 C -0.140 4.140 11 C -0.071 4.071 12 C -0.153 4.153 13 C -0.182 4.182 14 C -0.182 4.182 15 N -0.745 5.745 16 C -0.245 4.245 17 H 0.091 0.909 18 C 0.009 3.991 19 N -0.931 5.931 20 Si 0.879 3.121 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.409 0.591 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.362 0.638 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 3.901 13.017 16.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.199 4.199 4 C 0.066 3.934 5 H 0.080 0.920 6 C -0.018 4.018 7 N -0.370 5.370 8 C 0.294 3.706 9 O -0.435 6.435 10 C -0.180 4.180 11 C -0.109 4.109 12 C -0.172 4.172 13 C -0.219 4.219 14 C -0.219 4.219 15 N -0.387 5.387 16 C -0.375 4.375 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.578 5.578 20 Si 0.709 3.291 21 H -0.211 1.211 22 H -0.218 1.218 23 H -0.203 1.203 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.245 0.755 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.195 0.805 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.963 4.348 12.939 16.899 hybrid contribution 1.225 0.528 0.409 1.395 sum -8.738 4.876 13.348 16.682 Atomic orbital electron populations 1.21915 0.96465 1.01179 1.01072 1.21690 0.93862 0.96897 1.00823 1.21787 1.02107 0.95937 1.00100 1.20482 0.84986 0.97343 0.90633 0.92006 1.21850 0.97680 0.97767 0.84472 1.46095 1.48765 1.36638 1.05539 1.20687 0.81405 0.83561 0.84925 1.90659 1.36852 1.28920 1.87052 1.21660 1.02249 1.01405 0.92668 1.20894 1.00368 0.99338 0.90306 1.22387 1.00187 1.03779 0.90798 1.23055 0.98753 0.96221 1.03866 1.22964 1.03670 0.96805 0.98484 1.42822 1.00379 1.32973 1.62570 1.19050 0.89388 1.04025 1.25024 0.89090 1.24641 0.96154 0.97863 1.00029 1.69695 1.07073 1.34731 1.46347 0.86643 0.79981 0.82507 0.79919 1.21091 1.21756 1.20335 0.92955 0.93374 0.93018 0.90446 0.91938 0.93884 0.93499 0.91554 0.91352 0.75450 0.88820 0.88829 0.90923 0.91158 0.87665 0.88789 0.88994 0.88969 0.88805 0.80486 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 2 C -0.11 -1.82 2.92 -90.62 -0.26 -2.08 16 3 C -0.14 -2.29 8.69 37.16 0.32 -1.96 16 4 C 0.18 3.08 2.27 -67.93 -0.15 2.93 16 5 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 6 C 0.11 1.71 4.51 -4.05 -0.02 1.69 16 7 N -0.72 -11.11 5.39 -60.30 -0.32 -11.44 16 8 C 0.51 7.76 7.83 -10.98 -0.09 7.67 16 9 O -0.56 -10.19 15.98 5.56 0.09 -10.10 16 10 C -0.14 -1.63 5.66 -27.88 -0.16 -1.79 16 11 C -0.07 -0.80 4.78 -26.73 -0.13 -0.93 16 12 C -0.15 -1.46 5.73 -90.62 -0.52 -1.98 16 13 C -0.18 -1.57 10.18 -26.69 -0.27 -1.84 16 14 C -0.18 -1.58 10.26 -26.69 -0.27 -1.85 16 15 N -0.74 -15.92 3.60 -53.43 -0.19 -16.11 16 16 C -0.25 -6.37 10.41 -15.06 -0.16 -6.53 16 17 H 0.09 2.56 8.06 -52.48 -0.42 2.14 16 18 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 19 N -0.93 -28.03 13.97 55.49 0.78 -27.26 16 20 Si 0.88 21.20 27.73 -169.99 -4.71 16.48 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 23 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16 24 H 0.05 0.67 6.54 -51.93 -0.34 0.33 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.06 1.15 7.60 -51.93 -0.39 0.76 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.71 6.32 -51.93 -0.33 0.38 16 31 H 0.07 1.13 6.17 -51.93 -0.32 0.81 16 32 H 0.07 1.05 6.71 -51.93 -0.35 0.70 16 33 H 0.41 6.27 8.14 -40.82 -0.33 5.93 16 34 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.90 8.10 -51.93 -0.42 0.47 16 37 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 38 H 0.11 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.09 0.80 8.03 -51.93 -0.42 0.38 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.36 7.87 5.66 -40.82 -0.23 7.64 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -30.13 351.90 -8.31 -38.45 By element: Atomic # 1 Polarization: 20.62 SS G_CDS: -7.77 Total: 12.84 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -1.47 Total: -8.17 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.26 Total: -54.80 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.71 Total: 16.48 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -30.13 -8.31 -38.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715491027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.009 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds