Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46530 * 2 1 4 4 C 1.52997 * 109.46908 * 119.99854 * 2 1 3 5 5 H 1.08999 * 109.46983 * 60.00346 * 4 2 1 6 6 C 1.52993 * 109.47602 * 300.00088 * 4 2 1 7 7 N 1.46498 * 109.47559 * 185.00002 * 6 4 2 8 8 C 1.34770 * 119.99990 * 179.97438 * 7 6 4 9 9 O 1.21283 * 120.00347 * 0.02562 * 8 7 6 10 10 C 1.50707 * 119.99790 * 180.02562 * 8 7 6 11 11 C 1.53005 * 109.47086 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47163 * 180.02562 * 11 10 8 13 13 C 1.53000 * 117.49692 * 243.74899 * 12 11 10 14 14 C 1.52999 * 117.49889 * 175.08483 * 12 11 10 15 15 N 1.46506 * 109.46691 * 180.02562 * 4 2 1 16 16 C 1.36939 * 120.00073 * 274.72524 * 15 4 2 17 17 H 1.08004 * 119.99859 * 0.02562 * 16 15 4 18 18 C 1.38805 * 119.99849 * 180.02562 * 16 15 4 19 19 N 1.31625 * 120.00056 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00155 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46896 * 90.00225 * 20 18 16 22 22 H 1.48501 * 109.47275 * 210.00265 * 20 18 16 23 23 H 1.48499 * 109.47039 * 330.00065 * 20 18 16 24 24 H 1.08998 * 109.47401 * 299.99857 * 1 2 3 25 25 H 1.09005 * 109.46989 * 60.00258 * 1 2 3 26 26 H 1.08999 * 109.47016 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.46903 * 240.00143 * 2 1 3 28 28 H 1.09002 * 109.46655 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47149 * 299.99709 * 3 2 1 30 30 H 1.08995 * 109.47411 * 60.00453 * 3 2 1 31 31 H 1.09002 * 109.47378 * 305.00625 * 6 4 2 32 32 H 1.09004 * 109.46895 * 64.99844 * 6 4 2 33 33 H 0.96997 * 120.00009 * 0.02562 * 7 6 4 34 34 H 1.08997 * 109.47232 * 299.99988 * 10 8 7 35 35 H 1.08995 * 109.46819 * 60.00788 * 10 8 7 36 36 H 1.09005 * 109.47191 * 299.99906 * 11 10 8 37 37 H 1.08994 * 109.47135 * 59.99816 * 11 10 8 38 38 H 1.09000 * 115.54526 * 29.41535 * 12 11 10 39 39 H 1.08994 * 117.50038 * 359.97438 * 13 12 11 40 40 H 1.08999 * 117.49361 * 145.02315 * 13 12 11 41 41 H 1.08994 * 117.49958 * 214.97546 * 14 12 11 42 42 H 1.09001 * 117.49637 * 0.02562 * 14 12 11 43 43 H 0.97005 * 119.99811 * 95.00317 * 15 4 2 44 44 H 0.97000 * 119.99835 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6767 -1.7489 1.2492 6 6 1.5300 -0.0001 2.4985 7 7 2.1141 -0.6176 3.6916 8 6 1.8060 -0.1438 4.9151 9 8 1.0448 0.7935 5.0284 10 6 2.4073 -0.7788 6.1424 11 6 1.8972 -0.0576 7.3917 12 6 2.5082 -0.7019 8.6377 13 6 1.5538 -1.3813 9.6218 14 6 2.2110 -0.0483 9.9888 15 7 3.5051 -0.7206 1.2495 16 6 4.1903 -1.6950 0.5740 17 1 3.6506 -2.4637 0.0406 18 6 5.5783 -1.6947 0.5747 19 7 6.2370 -2.6315 -0.0742 20 14 6.5116 -0.3649 1.4966 21 1 6.7585 -0.8100 2.8916 22 1 7.8095 -0.1118 0.8207 23 1 5.7088 0.8843 1.5102 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.8183 1.0503 2.4549 32 1 0.4437 -0.0770 2.5443 33 1 2.7232 -1.3671 3.6010 34 1 2.1190 -1.8291 6.1865 35 1 3.4936 -0.7017 6.0962 36 1 2.1851 0.9928 7.3480 37 1 0.8110 -0.1350 7.4378 38 1 3.4926 -1.1494 8.5008 39 1 0.4907 -1.3690 9.3818 40 1 1.9106 -2.2757 10.1327 41 1 2.9996 -0.0664 10.7410 42 1 1.5798 0.8403 9.9900 43 1 3.9897 -0.0324 1.7316 44 1 7.2070 -2.6311 -0.0740 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715491027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = -43.606486 kcal Electronic energy + Delta-G solvation = -20871.861457 eV Core-core repulsion = 17823.674042 eV Total energy + Delta-G solvation = -3048.187415 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.189 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.85675 -39.05114 -38.27661 -35.20636 -35.04364 -33.18567 -32.70662 -29.30074 -27.95968 -26.33853 -24.88135 -23.80359 -23.19924 -21.41725 -21.19270 -20.12849 -19.76298 -17.79062 -17.41773 -16.99761 -16.61634 -16.20724 -15.73419 -15.51106 -15.06466 -14.88568 -14.77826 -14.59556 -14.21430 -14.03731 -13.84448 -13.05550 -12.97492 -12.86391 -12.68560 -12.61886 -12.42376 -12.26016 -12.22192 -12.11253 -12.04928 -11.82689 -11.63975 -11.24733 -11.21268 -10.96668 -10.80365 -10.70363 -9.98176 -9.29199 -7.99030 -5.31867 1.38400 1.40733 1.47276 1.68850 2.30983 2.49320 2.93659 3.32403 3.55734 3.72284 3.83697 3.89527 4.06408 4.09965 4.19675 4.26739 4.32101 4.42439 4.43282 4.48071 4.62136 4.70327 4.79409 4.81618 4.86509 4.90459 5.06836 5.07306 5.08103 5.13778 5.15433 5.18683 5.29544 5.30224 5.43258 5.48616 5.55122 5.65266 5.83048 6.24235 6.61738 7.10192 7.28255 7.84983 8.04246 9.22439 Molecular weight = 268.19amu Principal moments of inertia in cm(-1) A = 0.015085 B = 0.004956 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.684908 B = 5648.362124 C = 6947.636455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.109 4.109 3 C -0.138 4.138 4 C 0.175 3.825 5 H 0.057 0.943 6 C 0.116 3.884 7 N -0.720 5.720 8 C 0.506 3.494 9 O -0.588 6.588 10 C -0.134 4.134 11 C -0.066 4.066 12 C -0.161 4.161 13 C -0.179 4.179 14 C -0.183 4.183 15 N -0.742 5.742 16 C -0.218 4.218 17 H 0.061 0.939 18 C -0.055 4.055 19 N -0.982 5.982 20 Si 0.942 3.058 21 H -0.273 1.273 22 H -0.304 1.304 23 H -0.261 1.261 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.411 0.589 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.113 0.887 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.363 0.637 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 4.780 14.653 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.130 4.130 3 C -0.195 4.195 4 C 0.067 3.933 5 H 0.075 0.925 6 C -0.008 4.008 7 N -0.371 5.371 8 C 0.294 3.706 9 O -0.469 6.469 10 C -0.173 4.173 11 C -0.104 4.104 12 C -0.179 4.179 13 C -0.215 4.215 14 C -0.220 4.220 15 N -0.385 5.385 16 C -0.349 4.349 17 H 0.079 0.921 18 C -0.246 4.246 19 N -0.633 5.633 20 Si 0.771 3.229 21 H -0.199 1.199 22 H -0.231 1.231 23 H -0.187 1.187 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.054 0.946 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.247 0.753 34 H 0.132 0.868 35 H 0.124 0.876 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.197 0.803 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.927 5.246 14.598 18.974 hybrid contribution 1.385 0.230 -0.141 1.411 sum -9.542 5.476 14.457 18.167 Atomic orbital electron populations 1.21838 0.93680 1.02002 1.02316 1.21588 0.96187 0.96623 0.98634 1.21747 1.00318 0.95888 1.01580 1.20624 0.82693 0.97670 0.92299 0.92487 1.21705 0.98299 0.97057 0.83778 1.46133 1.48743 1.36614 1.05617 1.21288 0.80737 0.82995 0.85551 1.90644 1.38371 1.30418 1.87467 1.21699 1.02672 1.02119 0.90836 1.20803 0.99815 0.98646 0.91098 1.22342 1.00704 1.04529 0.90318 1.23123 0.98574 0.96644 1.03205 1.23044 1.03938 0.96839 0.98139 1.42749 1.01949 1.31867 1.61971 1.18964 0.89321 1.03454 1.23141 0.92059 1.25304 0.97229 1.00277 1.01836 1.69864 1.07010 1.37320 1.49121 0.85606 0.78023 0.80429 0.78833 1.19920 1.23086 1.18651 0.91884 0.91949 0.92474 0.93116 0.94593 0.92203 0.92271 0.92098 0.90072 0.75274 0.86844 0.87587 0.92421 0.92169 0.86878 0.88911 0.87819 0.87833 0.89075 0.80332 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.43 8.84 71.98 0.64 -2.80 16 2 C -0.11 -3.43 2.92 -10.79 -0.03 -3.46 16 3 C -0.14 -4.21 8.69 71.98 0.63 -3.58 16 4 C 0.18 5.97 2.27 44.99 0.10 6.08 16 5 H 0.06 2.02 8.08 -2.39 -0.02 2.00 16 6 C 0.12 3.50 4.51 86.38 0.39 3.89 16 7 N -0.72 -20.96 5.39 -463.07 -2.49 -23.46 16 8 C 0.51 14.59 7.83 87.66 0.69 15.27 16 9 O -0.59 -20.78 15.98 -3.04 -0.05 -20.83 16 10 C -0.13 -2.83 5.66 29.85 0.17 -2.66 16 11 C -0.07 -1.38 4.78 30.60 0.15 -1.24 16 12 C -0.16 -2.73 5.73 -10.79 -0.06 -2.79 16 13 C -0.18 -2.69 10.18 30.62 0.31 -2.38 16 14 C -0.18 -2.82 10.26 30.62 0.31 -2.51 16 15 N -0.74 -31.18 3.60 -322.95 -1.16 -32.34 16 16 C -0.22 -11.42 10.41 84.03 0.87 -10.54 16 17 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 18 C -0.05 -3.06 5.50 84.86 0.47 -2.59 16 19 N -0.98 -60.57 13.97 21.65 0.30 -60.27 16 20 Si 0.94 43.75 27.73 68.60 1.90 45.65 16 21 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 22 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 23 H -0.26 -11.28 6.52 99.48 0.65 -10.63 16 24 H 0.06 1.42 6.54 -2.39 -0.02 1.41 16 25 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.03 1.27 7.60 -2.39 -0.02 1.25 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.06 1.65 6.32 -2.39 -0.02 1.64 16 31 H 0.06 1.94 6.17 -2.39 -0.01 1.93 16 32 H 0.08 2.28 6.71 -2.38 -0.02 2.27 16 33 H 0.41 11.85 8.14 -92.71 -0.75 11.09 16 34 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.06 1.37 8.10 -2.38 -0.02 1.35 16 37 H 0.06 1.37 7.83 -2.39 -0.02 1.35 16 38 H 0.11 1.76 8.08 -2.39 -0.02 1.74 16 39 H 0.09 1.42 8.03 -2.39 -0.02 1.40 16 40 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.36 15.24 5.66 -92.70 -0.52 14.71 16 44 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -65.13 351.90 2.77 -62.36 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.36 Total: 38.20 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 4.63 Total: -9.32 kcal Atomic # 7 Polarization: -112.71 SS G_CDS: -3.35 Total: -116.07 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.90 Total: 45.65 kcal Total: -65.13 2.77 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715491027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.757 kcal (2) G-P(sol) polarization free energy of solvation -65.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds